data_5OKD # _model_server_result.job_id xm4EM9mfAnhTScDKI8I08Q _model_server_result.datetime_utc '2024-11-23 10:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5okd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":404}' # _entry.id 5OKD # _exptl.entry_id 5OKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.388 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-methoxy-3-methyl-2-[5-[4-(trifluoromethyloxy)phenyl]pyridin-3-yl]-1~{H}-quinolin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OKD _cell.length_a 209.871 _cell.length_b 209.871 _cell.length_c 342.097 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 15 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 H SG CYS 37 H CYS 24 1_555 H SG CYS 81 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 H SG CYS 53 H CYS 40 1_555 H SG CYS 67 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 D NE2 HIS 125 D HIS 41 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 D SD MET 244 D MET 160 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'C23 H17 F3 N2 O3' _chem_comp.formula_weight 426.388 _chem_comp.id 9XE _chem_comp.mon_nstd_flag . _chem_comp.name 7-methoxy-3-methyl-2-[5-[4-(trifluoromethyloxy)phenyl]pyridin-3-yl]-1~{H}-quinolin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C22 9XE sing 60 n n O2 C22 9XE sing 61 n n O2 C19 9XE sing 62 n n C22 F2 9XE sing 63 n n C22 F1 9XE sing 64 n n C19 C20 9XE doub 65 n y C19 C18 9XE sing 66 n y C20 C21 9XE sing 67 n y C18 C17 9XE doub 68 n y C21 C16 9XE doub 69 n y C17 C16 9XE sing 70 n y C16 C14 9XE sing 71 n n C14 C13 9XE doub 72 n y C14 C15 9XE sing 73 n y C13 N1 9XE sing 74 n y C15 C10 9XE doub 75 n y N1 C12 9XE doub 76 n y C10 C12 9XE sing 77 n y C10 C7 9XE sing 78 n n C9 C8 9XE sing 79 n n C7 C8 9XE doub 80 n n C7 N 9XE sing 81 n n C8 C6 9XE sing 82 n n N C4 9XE sing 83 n n C6 O 9XE doub 84 n n C6 C5 9XE sing 85 n n C4 C5 9XE doub 86 n y C4 C3 9XE sing 87 n y C5 C 9XE sing 88 n y C3 C2 9XE doub 89 n y C C1 9XE doub 90 n y C2 C1 9XE sing 91 n y C2 O1 9XE sing 92 n n O1 C11 9XE sing 93 n n C12 H1 9XE sing 94 n n C15 H2 9XE sing 95 n n C20 H3 9XE sing 96 n n C18 H4 9XE sing 97 n n C11 H5 9XE sing 98 n n C11 H6 9XE sing 99 n n C11 H7 9XE sing 100 n n C3 H8 9XE sing 101 n n C9 H10 9XE sing 102 n n C9 H11 9XE sing 103 n n C9 H12 9XE sing 104 n n C17 H13 9XE sing 105 n n C21 H14 9XE sing 106 n n C13 H15 9XE sing 107 n n C H16 9XE sing 108 n n C1 H17 9XE sing 109 n n N H9 9XE sing 110 n n # _atom_sites.entry_id 5OKD _atom_sites.fract_transf_matrix[1][1] 0.004765 _atom_sites.fract_transf_matrix[1][2] 0.002751 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 PG4 A 1 501 503 PG4 PG4 . L 12 6PE A 1 502 1 6PE 6PE . M 13 CDL C 1 401 502 CDL CDL . N 14 HEM C 1 402 501 HEM HEM . O 14 HEM C 1 403 502 HEM HEM . P 15 9XE C 1 404 503 9XE SCK . Q 16 LMT C 1 405 506 LMT LMT . R 11 PG4 C 1 406 507 PG4 PG4 . S 11 PG4 C 1 407 508 PG4 PG4 . T 13 CDL C 1 408 501 CDL CDL . U 17 PEE C 1 409 1 PEE PEE . V 18 HEC D 1 501 501 HEC HEC . W 19 PO4 D 1 502 503 PO4 PO4 . X 13 CDL D 1 503 504 CDL CDL . Y 20 FES E 1 201 200 FES FES . Z 21 PX4 E 1 202 202 PX4 PX4 . AA 19 PO4 E 1 203 504 PO4 PO4 . BA 17 PEE E 1 204 2 PEE PEE . CA 13 CDL E 1 205 1 CDL CDL . DA 19 PO4 F 1 501 501 PO4 PO4 . EA 19 PO4 G 1 101 502 PO4 PO4 . FA 19 PO4 G 1 102 503 PO4 PO4 . GA 19 PO4 G 1 103 1 PO4 PO4 . HA 22 HOH A 1 601 111 HOH HOH . HA 22 HOH A 2 602 44 HOH HOH . HA 22 HOH A 3 603 51 HOH HOH . HA 22 HOH A 4 604 46 HOH HOH . HA 22 HOH A 5 605 64 HOH HOH . HA 22 HOH A 6 606 63 HOH HOH . HA 22 HOH A 7 607 54 HOH HOH . HA 22 HOH A 8 608 53 HOH HOH . HA 22 HOH A 9 609 36 HOH HOH . HA 22 HOH A 10 610 8 HOH HOH . HA 22 HOH A 11 611 17 HOH HOH . HA 22 HOH A 12 612 92 HOH HOH . HA 22 HOH A 13 613 56 HOH HOH . HA 22 HOH A 14 614 82 HOH HOH . HA 22 HOH A 15 615 87 HOH HOH . IA 22 HOH B 1 501 57 HOH HOH . IA 22 HOH B 2 502 5 HOH HOH . IA 22 HOH B 3 503 25 HOH HOH . IA 22 HOH B 4 504 27 HOH HOH . IA 22 HOH B 5 505 26 HOH HOH . IA 22 HOH B 6 506 91 HOH HOH . IA 22 HOH B 7 507 105 HOH HOH . IA 22 HOH B 8 508 30 HOH HOH . IA 22 HOH B 9 509 94 HOH HOH . IA 22 HOH B 10 510 47 HOH HOH . IA 22 HOH B 11 511 110 HOH HOH . IA 22 HOH B 12 512 100 HOH HOH . JA 22 HOH C 1 501 11 HOH HOH . JA 22 HOH C 2 502 10 HOH HOH . JA 22 HOH C 3 503 43 HOH HOH . JA 22 HOH C 4 504 55 HOH HOH . JA 22 HOH C 5 505 12 HOH HOH . JA 22 HOH C 6 506 41 HOH HOH . JA 22 HOH C 7 507 22 HOH HOH . JA 22 HOH C 8 508 67 HOH HOH . JA 22 HOH C 9 509 23 HOH HOH . JA 22 HOH C 10 510 33 HOH HOH . JA 22 HOH C 11 511 108 HOH HOH . JA 22 HOH C 12 512 31 HOH HOH . JA 22 HOH C 13 513 37 HOH HOH . JA 22 HOH C 14 514 101 HOH HOH . JA 22 HOH C 15 515 83 HOH HOH . JA 22 HOH C 16 516 104 HOH HOH . JA 22 HOH C 17 517 72 HOH HOH . JA 22 HOH C 18 518 71 HOH HOH . JA 22 HOH C 19 519 70 HOH HOH . JA 22 HOH C 20 520 95 HOH HOH . JA 22 HOH C 21 521 81 HOH HOH . JA 22 HOH C 22 522 103 HOH HOH . JA 22 HOH C 23 523 77 HOH HOH . JA 22 HOH C 24 524 79 HOH HOH . JA 22 HOH C 25 525 84 HOH HOH . JA 22 HOH C 26 526 106 HOH HOH . JA 22 HOH C 27 527 109 HOH HOH . KA 22 HOH D 1 601 49 HOH HOH . KA 22 HOH D 2 602 86 HOH HOH . KA 22 HOH D 3 603 90 HOH HOH . KA 22 HOH D 4 604 48 HOH HOH . KA 22 HOH D 5 605 96 HOH HOH . LA 22 HOH E 1 301 85 HOH HOH . LA 22 HOH E 2 302 99 HOH HOH . LA 22 HOH E 3 303 59 HOH HOH . LA 22 HOH E 4 304 9 HOH HOH . LA 22 HOH E 5 305 60 HOH HOH . LA 22 HOH E 6 306 21 HOH HOH . MA 22 HOH F 1 601 39 HOH HOH . MA 22 HOH F 2 602 58 HOH HOH . MA 22 HOH F 3 603 66 HOH HOH . MA 22 HOH F 4 604 88 HOH HOH . MA 22 HOH F 5 605 45 HOH HOH . MA 22 HOH F 6 606 28 HOH HOH . MA 22 HOH F 7 607 107 HOH HOH . MA 22 HOH F 8 608 73 HOH HOH . NA 22 HOH G 1 201 40 HOH HOH . NA 22 HOH G 2 202 50 HOH HOH . NA 22 HOH G 3 203 98 HOH HOH . NA 22 HOH G 4 204 52 HOH HOH . NA 22 HOH G 5 205 102 HOH HOH . OA 22 HOH H 1 101 65 HOH HOH . PA 22 HOH J 1 101 24 HOH HOH . PA 22 HOH J 2 102 18 HOH HOH . PA 22 HOH J 3 103 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 9XE . . . P 15 -65.732 -67.599 29.758 1 77.62 ? C12 9XE 404 C 1 HETATM 2 C C15 9XE . . . P 15 -65.715 -65.814 28.151 1 77.99 ? C15 9XE 404 C 1 HETATM 3 C C16 9XE . . . P 15 -63.925 -65.713 26.397 1 81.14 ? C16 9XE 404 C 1 HETATM 4 C C20 9XE . . . P 15 -62.833 -65.921 24.248 1 82.32 ? C20 9XE 404 C 1 HETATM 5 C C19 9XE . . . P 15 -62.76 -64.541 24.151 1 83.29 ? C19 9XE 404 C 1 HETATM 6 C C18 9XE . . . P 15 -63.255 -63.733 25.165 1 82.85 ? C18 9XE 404 C 1 HETATM 7 C C11 9XE . . . P 15 -69.99 -60.215 33.648 1 83.06 ? C11 9XE 404 C 1 HETATM 8 C C6 9XE . . . P 15 -70.015 -65.984 30.52 1 79.06 ? C6 9XE 404 C 1 HETATM 9 C C5 9XE . . . P 15 -69.835 -64.613 31.064 1 77.76 ? C5 9XE 404 C 1 HETATM 10 C C3 9XE . . . P 15 -68.346 -62.681 31.475 1 78.66 ? C3 9XE 404 C 1 HETATM 11 C C2 9XE . . . P 15 -69.427 -62.025 32.074 1 79.51 ? C2 9XE 404 C 1 HETATM 12 N N1 9XE . . . P 15 -64.628 -68.111 29.19 1 78.01 ? N1 9XE 404 C 1 HETATM 13 C C8 9XE . . . P 15 -68.825 -66.625 29.898 1 77.98 ? C8 9XE 404 C 1 HETATM 14 C C9 9XE . . . P 15 -68.928 -68.015 29.315 1 78.39 ? C9 9XE 404 C 1 HETATM 15 C C10 9XE . . . P 15 -66.31 -66.435 29.251 1 77.42 ? C10 9XE 404 C 1 HETATM 16 F F2 9XE . . . P 15 -61.165 -62.061 23.171 1 90.21 ? F2 9XE 404 C 1 HETATM 17 C C22 9XE . . . P 15 -60.926 -63.359 23.126 1 90.7 ? C22 9XE 404 C 1 HETATM 18 F F 9XE . . . P 15 -60.222 -63.687 22.057 1 92.61 ? F 9XE 404 C 1 HETATM 19 F F1 9XE . . . P 15 -60.26 -63.751 24.203 1 92.68 ? F1 9XE 404 C 1 HETATM 20 O O2 9XE . . . P 15 -62.193 -63.987 23.048 1 86.79 ? O2 9XE 404 C 1 HETATM 21 C C17 9XE . . . P 15 -63.841 -64.32 26.286 1 82.83 ? C17 9XE 404 C 1 HETATM 22 C C21 9XE . . . P 15 -63.418 -66.507 25.364 1 82 ? C21 9XE 404 C 1 HETATM 23 C C14 9XE . . . P 15 -64.559 -66.358 27.585 1 79.01 ? C14 9XE 404 C 1 HETATM 24 C C13 9XE . . . P 15 -64.032 -67.532 28.134 1 78.99 ? C13 9XE 404 C 1 HETATM 25 C C7 9XE . . . P 15 -67.54 -65.851 29.868 1 76.87 ? C7 9XE 404 C 1 HETATM 26 O O 9XE . . . P 15 -71.122 -66.568 30.585 1 80.92 ? O 9XE 404 C 1 HETATM 27 C C 9XE . . . P 15 -70.876 -63.924 31.664 1 76.98 ? C 9XE 404 C 1 HETATM 28 N N 9XE . . . P 15 -67.458 -64.606 30.388 1 75.8 ? N 9XE 404 C 1 HETATM 29 C C4 9XE . . . P 15 -68.497 -63.969 30.961 1 77.01 ? C4 9XE 404 C 1 HETATM 30 C C1 9XE . . . P 15 -70.683 -62.644 32.162 1 78.08 ? C1 9XE 404 C 1 HETATM 31 O O1 9XE . . . P 15 -69.218 -60.756 32.569 1 82.62 ? O1 9XE 404 C 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 32 _model_server_stats.element_count 31 #