data_5OKO # _model_server_result.job_id QdkYlkKEq0CH7mIdfL2EZw _model_server_result.datetime_utc '2024-11-23 03:18:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":904}' # _entry.id 5OKO # _exptl.entry_id 5OKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.85 _cell.angle_gamma 90 _cell.entry_id 5OKO _cell.length_a 44.035 _cell.length_b 81.118 _cell.length_c 128.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 127 n n C1 C2 EDO sing 128 n n C1 H11 EDO sing 129 n n C1 H12 EDO sing 130 n n O1 HO1 EDO sing 131 n n C2 O2 EDO sing 132 n n C2 H21 EDO sing 133 n n C2 H22 EDO sing 134 n n O2 HO2 EDO sing 135 n n # _atom_sites.entry_id 5OKO _atom_sites.fract_transf_matrix[1][1] 0.022709 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001129 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 901 1 EDO EDO . D 2 EDO A 1 902 2 EDO EDO . E 2 EDO A 1 903 3 EDO EDO . F 2 EDO A 1 904 4 EDO EDO . G 2 EDO B 1 901 5 EDO EDO . H 3 B3P B 1 902 1 B3P DRG . I 4 HOH A 1 1001 45 HOH HOH . I 4 HOH A 2 1002 218 HOH HOH . I 4 HOH A 3 1003 228 HOH HOH . I 4 HOH A 4 1004 43 HOH HOH . I 4 HOH A 5 1005 210 HOH HOH . I 4 HOH A 6 1006 117 HOH HOH . I 4 HOH A 7 1007 221 HOH HOH . I 4 HOH A 8 1008 112 HOH HOH . I 4 HOH A 9 1009 193 HOH HOH . I 4 HOH A 10 1010 125 HOH HOH . I 4 HOH A 11 1011 220 HOH HOH . I 4 HOH A 12 1012 256 HOH HOH . I 4 HOH A 13 1013 156 HOH HOH . I 4 HOH A 14 1014 85 HOH HOH . I 4 HOH A 15 1015 119 HOH HOH . I 4 HOH A 16 1016 275 HOH HOH . I 4 HOH A 17 1017 169 HOH HOH . I 4 HOH A 18 1018 219 HOH HOH . I 4 HOH A 19 1019 32 HOH HOH . I 4 HOH A 20 1020 137 HOH HOH . I 4 HOH A 21 1021 149 HOH HOH . I 4 HOH A 22 1022 258 HOH HOH . I 4 HOH A 23 1023 189 HOH HOH . I 4 HOH A 24 1024 92 HOH HOH . I 4 HOH A 25 1025 155 HOH HOH . I 4 HOH A 26 1026 9 HOH HOH . I 4 HOH A 27 1027 106 HOH HOH . I 4 HOH A 28 1028 50 HOH HOH . I 4 HOH A 29 1029 56 HOH HOH . I 4 HOH A 30 1030 190 HOH HOH . I 4 HOH A 31 1031 65 HOH HOH . I 4 HOH A 32 1032 88 HOH HOH . I 4 HOH A 33 1033 226 HOH HOH . I 4 HOH A 34 1034 131 HOH HOH . I 4 HOH A 35 1035 51 HOH HOH . I 4 HOH A 36 1036 52 HOH HOH . I 4 HOH A 37 1037 126 HOH HOH . I 4 HOH A 38 1038 266 HOH HOH . I 4 HOH A 39 1039 74 HOH HOH . I 4 HOH A 40 1040 22 HOH HOH . I 4 HOH A 41 1041 18 HOH HOH . I 4 HOH A 42 1042 277 HOH HOH . I 4 HOH A 43 1043 118 HOH HOH . I 4 HOH A 44 1044 186 HOH HOH . I 4 HOH A 45 1045 113 HOH HOH . I 4 HOH A 46 1046 39 HOH HOH . I 4 HOH A 47 1047 227 HOH HOH . I 4 HOH A 48 1048 180 HOH HOH . I 4 HOH A 49 1049 23 HOH HOH . I 4 HOH A 50 1050 259 HOH HOH . I 4 HOH A 51 1051 162 HOH HOH . I 4 HOH A 52 1052 121 HOH HOH . I 4 HOH A 53 1053 68 HOH HOH . I 4 HOH A 54 1054 31 HOH HOH . I 4 HOH A 55 1055 251 HOH HOH . I 4 HOH A 56 1056 3 HOH HOH . I 4 HOH A 57 1057 11 HOH HOH . I 4 HOH A 58 1058 224 HOH HOH . I 4 HOH A 59 1059 114 HOH HOH . I 4 HOH A 60 1060 268 HOH HOH . I 4 HOH A 61 1061 12 HOH HOH . I 4 HOH A 62 1062 108 HOH HOH . I 4 HOH A 63 1063 157 HOH HOH . I 4 HOH A 64 1064 7 HOH HOH . I 4 HOH A 65 1065 267 HOH HOH . I 4 HOH A 66 1066 249 HOH HOH . I 4 HOH A 67 1067 8 HOH HOH . I 4 HOH A 68 1068 206 HOH HOH . I 4 HOH A 69 1069 141 HOH HOH . I 4 HOH A 70 1070 42 HOH HOH . I 4 HOH A 71 1071 2 HOH HOH . I 4 HOH A 72 1072 86 HOH HOH . I 4 HOH A 73 1073 140 HOH HOH . I 4 HOH A 74 1074 265 HOH HOH . I 4 HOH A 75 1075 63 HOH HOH . I 4 HOH A 76 1076 205 HOH HOH . I 4 HOH A 77 1077 94 HOH HOH . I 4 HOH A 78 1078 191 HOH HOH . I 4 HOH A 79 1079 28 HOH HOH . I 4 HOH A 80 1080 136 HOH HOH . I 4 HOH A 81 1081 30 HOH HOH . I 4 HOH A 82 1082 194 HOH HOH . I 4 HOH A 83 1083 129 HOH HOH . I 4 HOH A 84 1084 80 HOH HOH . I 4 HOH A 85 1085 26 HOH HOH . I 4 HOH A 86 1086 260 HOH HOH . I 4 HOH A 87 1087 216 HOH HOH . I 4 HOH A 88 1088 144 HOH HOH . I 4 HOH A 89 1089 146 HOH HOH . I 4 HOH A 90 1090 202 HOH HOH . I 4 HOH A 91 1091 276 HOH HOH . I 4 HOH A 92 1092 164 HOH HOH . I 4 HOH A 93 1093 104 HOH HOH . I 4 HOH A 94 1094 103 HOH HOH . I 4 HOH A 95 1095 274 HOH HOH . I 4 HOH A 96 1096 142 HOH HOH . I 4 HOH A 97 1097 69 HOH HOH . I 4 HOH A 98 1098 152 HOH HOH . I 4 HOH A 99 1099 41 HOH HOH . I 4 HOH A 100 1100 24 HOH HOH . I 4 HOH A 101 1101 158 HOH HOH . I 4 HOH A 102 1102 198 HOH HOH . I 4 HOH A 103 1103 96 HOH HOH . I 4 HOH A 104 1104 16 HOH HOH . I 4 HOH A 105 1105 196 HOH HOH . I 4 HOH A 106 1106 252 HOH HOH . I 4 HOH A 107 1107 107 HOH HOH . I 4 HOH A 108 1108 84 HOH HOH . I 4 HOH A 109 1109 217 HOH HOH . I 4 HOH A 110 1110 46 HOH HOH . I 4 HOH A 111 1111 197 HOH HOH . I 4 HOH A 112 1112 132 HOH HOH . I 4 HOH A 113 1113 5 HOH HOH . I 4 HOH A 114 1114 212 HOH HOH . I 4 HOH A 115 1115 53 HOH HOH . I 4 HOH A 116 1116 254 HOH HOH . I 4 HOH A 117 1117 75 HOH HOH . I 4 HOH A 118 1118 105 HOH HOH . I 4 HOH A 119 1119 110 HOH HOH . I 4 HOH A 120 1120 223 HOH HOH . I 4 HOH A 121 1121 183 HOH HOH . I 4 HOH A 122 1122 57 HOH HOH . I 4 HOH A 123 1123 60 HOH HOH . I 4 HOH A 124 1124 195 HOH HOH . I 4 HOH A 125 1125 72 HOH HOH . I 4 HOH A 126 1126 150 HOH HOH . I 4 HOH A 127 1127 59 HOH HOH . I 4 HOH A 128 1128 55 HOH HOH . I 4 HOH A 129 1129 90 HOH HOH . I 4 HOH A 130 1130 165 HOH HOH . I 4 HOH A 131 1131 264 HOH HOH . I 4 HOH A 132 1132 261 HOH HOH . I 4 HOH A 133 1133 154 HOH HOH . I 4 HOH A 134 1134 78 HOH HOH . I 4 HOH A 135 1135 148 HOH HOH . I 4 HOH A 136 1136 153 HOH HOH . I 4 HOH A 137 1137 73 HOH HOH . I 4 HOH A 138 1138 225 HOH HOH . I 4 HOH A 139 1139 286 HOH HOH . I 4 HOH A 140 1140 284 HOH HOH . I 4 HOH A 141 1141 208 HOH HOH . I 4 HOH A 142 1142 145 HOH HOH . I 4 HOH A 143 1143 287 HOH HOH . I 4 HOH A 144 1144 160 HOH HOH . I 4 HOH A 145 1145 109 HOH HOH . I 4 HOH A 146 1146 127 HOH HOH . I 4 HOH A 147 1147 288 HOH HOH . I 4 HOH A 148 1148 215 HOH HOH . I 4 HOH A 149 1149 182 HOH HOH . I 4 HOH A 150 1150 201 HOH HOH . I 4 HOH A 151 1151 263 HOH HOH . I 4 HOH A 152 1152 123 HOH HOH . I 4 HOH A 153 1153 134 HOH HOH . I 4 HOH A 154 1154 222 HOH HOH . I 4 HOH A 155 1155 283 HOH HOH . J 4 HOH B 1 1001 244 HOH HOH . J 4 HOH B 2 1002 281 HOH HOH . J 4 HOH B 3 1003 278 HOH HOH . J 4 HOH B 4 1004 232 HOH HOH . J 4 HOH B 5 1005 25 HOH HOH . J 4 HOH B 6 1006 269 HOH HOH . J 4 HOH B 7 1007 177 HOH HOH . J 4 HOH B 8 1008 213 HOH HOH . J 4 HOH B 9 1009 138 HOH HOH . J 4 HOH B 10 1010 100 HOH HOH . J 4 HOH B 11 1011 243 HOH HOH . J 4 HOH B 12 1012 6 HOH HOH . J 4 HOH B 13 1013 211 HOH HOH . J 4 HOH B 14 1014 279 HOH HOH . J 4 HOH B 15 1015 250 HOH HOH . J 4 HOH B 16 1016 66 HOH HOH . J 4 HOH B 17 1017 147 HOH HOH . J 4 HOH B 18 1018 37 HOH HOH . J 4 HOH B 19 1019 181 HOH HOH . J 4 HOH B 20 1020 185 HOH HOH . J 4 HOH B 21 1021 271 HOH HOH . J 4 HOH B 22 1022 231 HOH HOH . J 4 HOH B 23 1023 245 HOH HOH . J 4 HOH B 24 1024 1 HOH HOH . J 4 HOH B 25 1025 99 HOH HOH . J 4 HOH B 26 1026 13 HOH HOH . J 4 HOH B 27 1027 285 HOH HOH . J 4 HOH B 28 1028 101 HOH HOH . J 4 HOH B 29 1029 255 HOH HOH . J 4 HOH B 30 1030 44 HOH HOH . J 4 HOH B 31 1031 27 HOH HOH . J 4 HOH B 32 1032 179 HOH HOH . J 4 HOH B 33 1033 98 HOH HOH . J 4 HOH B 34 1034 83 HOH HOH . J 4 HOH B 35 1035 178 HOH HOH . J 4 HOH B 36 1036 280 HOH HOH . J 4 HOH B 37 1037 87 HOH HOH . J 4 HOH B 38 1038 82 HOH HOH . J 4 HOH B 39 1039 40 HOH HOH . J 4 HOH B 40 1040 238 HOH HOH . J 4 HOH B 41 1041 58 HOH HOH . J 4 HOH B 42 1042 93 HOH HOH . J 4 HOH B 43 1043 230 HOH HOH . J 4 HOH B 44 1044 116 HOH HOH . J 4 HOH B 45 1045 4 HOH HOH . J 4 HOH B 46 1046 248 HOH HOH . J 4 HOH B 47 1047 172 HOH HOH . J 4 HOH B 48 1048 282 HOH HOH . J 4 HOH B 49 1049 21 HOH HOH . J 4 HOH B 50 1050 124 HOH HOH . J 4 HOH B 51 1051 36 HOH HOH . J 4 HOH B 52 1052 209 HOH HOH . J 4 HOH B 53 1053 89 HOH HOH . J 4 HOH B 54 1054 77 HOH HOH . J 4 HOH B 55 1055 204 HOH HOH . J 4 HOH B 56 1056 176 HOH HOH . J 4 HOH B 57 1057 163 HOH HOH . J 4 HOH B 58 1058 15 HOH HOH . J 4 HOH B 59 1059 272 HOH HOH . J 4 HOH B 60 1060 91 HOH HOH . J 4 HOH B 61 1061 38 HOH HOH . J 4 HOH B 62 1062 239 HOH HOH . J 4 HOH B 63 1063 139 HOH HOH . J 4 HOH B 64 1064 234 HOH HOH . J 4 HOH B 65 1065 33 HOH HOH . J 4 HOH B 66 1066 175 HOH HOH . J 4 HOH B 67 1067 171 HOH HOH . J 4 HOH B 68 1068 14 HOH HOH . J 4 HOH B 69 1069 253 HOH HOH . J 4 HOH B 70 1070 49 HOH HOH . J 4 HOH B 71 1071 247 HOH HOH . J 4 HOH B 72 1072 229 HOH HOH . J 4 HOH B 73 1073 97 HOH HOH . J 4 HOH B 74 1074 120 HOH HOH . J 4 HOH B 75 1075 20 HOH HOH . J 4 HOH B 76 1076 159 HOH HOH . J 4 HOH B 77 1077 143 HOH HOH . J 4 HOH B 78 1078 130 HOH HOH . J 4 HOH B 79 1079 10 HOH HOH . J 4 HOH B 80 1080 67 HOH HOH . J 4 HOH B 81 1081 246 HOH HOH . J 4 HOH B 82 1082 61 HOH HOH . J 4 HOH B 83 1083 70 HOH HOH . J 4 HOH B 84 1084 170 HOH HOH . J 4 HOH B 85 1085 173 HOH HOH . J 4 HOH B 86 1086 71 HOH HOH . J 4 HOH B 87 1087 62 HOH HOH . J 4 HOH B 88 1088 188 HOH HOH . J 4 HOH B 89 1089 233 HOH HOH . J 4 HOH B 90 1090 168 HOH HOH . J 4 HOH B 91 1091 17 HOH HOH . J 4 HOH B 92 1092 151 HOH HOH . J 4 HOH B 93 1093 235 HOH HOH . J 4 HOH B 94 1094 29 HOH HOH . J 4 HOH B 95 1095 54 HOH HOH . J 4 HOH B 96 1096 214 HOH HOH . J 4 HOH B 97 1097 166 HOH HOH . J 4 HOH B 98 1098 64 HOH HOH . J 4 HOH B 99 1099 122 HOH HOH . J 4 HOH B 100 1100 273 HOH HOH . J 4 HOH B 101 1101 35 HOH HOH . J 4 HOH B 102 1102 192 HOH HOH . J 4 HOH B 103 1103 184 HOH HOH . J 4 HOH B 104 1104 257 HOH HOH . J 4 HOH B 105 1105 48 HOH HOH . J 4 HOH B 106 1106 19 HOH HOH . J 4 HOH B 107 1107 128 HOH HOH . J 4 HOH B 108 1108 262 HOH HOH . J 4 HOH B 109 1109 133 HOH HOH . J 4 HOH B 110 1110 174 HOH HOH . J 4 HOH B 111 1111 47 HOH HOH . J 4 HOH B 112 1112 236 HOH HOH . J 4 HOH B 113 1113 199 HOH HOH . J 4 HOH B 114 1114 102 HOH HOH . J 4 HOH B 115 1115 135 HOH HOH . J 4 HOH B 116 1116 203 HOH HOH . J 4 HOH B 117 1117 207 HOH HOH . J 4 HOH B 118 1118 187 HOH HOH . J 4 HOH B 119 1119 270 HOH HOH . J 4 HOH B 120 1120 34 HOH HOH . J 4 HOH B 121 1121 200 HOH HOH . J 4 HOH B 122 1122 242 HOH HOH . J 4 HOH B 123 1123 81 HOH HOH . J 4 HOH B 124 1124 237 HOH HOH . J 4 HOH B 125 1125 115 HOH HOH . J 4 HOH B 126 1126 76 HOH HOH . J 4 HOH B 127 1127 167 HOH HOH . J 4 HOH B 128 1128 79 HOH HOH . J 4 HOH B 129 1129 161 HOH HOH . J 4 HOH B 130 1130 95 HOH HOH . J 4 HOH B 131 1131 111 HOH HOH . J 4 HOH B 132 1132 240 HOH HOH . J 4 HOH B 133 1133 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 14.275 29.89 -7.948 1 41.38 ? C1 EDO 904 A 1 HETATM 2 O O1 EDO . . . F 2 13.689 31.194 -8.011 1 43.87 ? O1 EDO 904 A 1 HETATM 3 C C2 EDO . . . F 2 15.784 30.036 -7.847 1 41.25 ? C2 EDO 904 A 1 HETATM 4 O O2 EDO . . . F 2 16.195 30.638 -6.61 1 38.63 ? O2 EDO 904 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #