data_5OL2 # _model_server_result.job_id 5LpFsV2EKjwnDgY-DfLf4A _model_server_result.datetime_utc '2024-12-03 12:47:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ol2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5OL2 # _exptl.entry_id 5OL2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OL2 _cell.length_a 177.06 _cell.length_b 177.06 _cell.length_c 493.15 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OL2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L 1 1 D,E,F,M,N,O,P,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 J N N ? 4 M N N ? 4 O N N ? 4 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B CG2 THR 22 B THR 27 1_555 K N1A COS . C COS 402 10_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 C NH2 ARG 242 C ARG 242 1_555 K O5P COS . C COS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 D ND1 HIS 280 D HIS 280 1_555 M O2 FAD . D FAD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale4 D ND2 ASN 294 D ASN 294 1_555 M O3B FAD . D FAD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 H CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc2 A OD1 ASP 188 A ASP 188 1_555 H CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc3 C OE1 GLU 29 C GLU 29 1_555 L CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? metalc ? metalc4 C OE1 GLU 33 C GLU 33 1_555 L CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? metalc ? metalc5 C OE2 GLU 33 C GLU 33 1_555 L CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc6 D OE2 GLU 75 D GLU 75 1_555 N CA CA . D CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc7 D OD1 ASP 188 D ASP 188 1_555 N CA CA . D CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc8 F OE1 GLU 29 F GLU 29 1_555 S CA CA . F CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? metalc ? metalc9 F OE1 GLU 33 F GLU 33 1_555 S CA CA . F CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc10 F OE2 GLU 33 F GLU 33 1_555 S CA CA . F CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 170 n n PA O2A FAD sing 171 n n PA O5B FAD sing 172 n n PA O3P FAD sing 173 n n O2A HOA2 FAD sing 174 n n O5B C5B FAD sing 175 n n C5B C4B FAD sing 176 n n C5B H51A FAD sing 177 n n C5B H52A FAD sing 178 n n C4B O4B FAD sing 179 n n C4B C3B FAD sing 180 n n C4B H4B FAD sing 181 n n O4B C1B FAD sing 182 n n C3B O3B FAD sing 183 n n C3B C2B FAD sing 184 n n C3B H3B FAD sing 185 n n O3B HO3A FAD sing 186 n n C2B O2B FAD sing 187 n n C2B C1B FAD sing 188 n n C2B H2B FAD sing 189 n n O2B HO2A FAD sing 190 n n C1B N9A FAD sing 191 n n C1B H1B FAD sing 192 n n N9A C8A FAD sing 193 n y N9A C4A FAD sing 194 n y C8A N7A FAD doub 195 n y C8A H8A FAD sing 196 n n N7A C5A FAD sing 197 n y C5A C6A FAD sing 198 n y C5A C4A FAD doub 199 n y C6A N6A FAD sing 200 n n C6A N1A FAD doub 201 n y N6A H61A FAD sing 202 n n N6A H62A FAD sing 203 n n N1A C2A FAD sing 204 n y C2A N3A FAD doub 205 n y C2A H2A FAD sing 206 n n N3A C4A FAD sing 207 n y N1 C2 FAD sing 208 n n N1 C10 FAD doub 209 n n C2 O2 FAD doub 210 n n C2 N3 FAD sing 211 n n N3 C4 FAD sing 212 n n N3 HN3 FAD sing 213 n n C4 O4 FAD doub 214 n n C4 C4X FAD sing 215 n n C4X N5 FAD doub 216 n n C4X C10 FAD sing 217 n n N5 C5X FAD sing 218 n n C5X C6 FAD doub 219 n y C5X C9A FAD sing 220 n y C6 C7 FAD sing 221 n y C6 H6 FAD sing 222 n n C7 C7M FAD sing 223 n n C7 C8 FAD doub 224 n y C7M HM71 FAD sing 225 n n C7M HM72 FAD sing 226 n n C7M HM73 FAD sing 227 n n C8 C8M FAD sing 228 n n C8 C9 FAD sing 229 n y C8M HM81 FAD sing 230 n n C8M HM82 FAD sing 231 n n C8M HM83 FAD sing 232 n n C9 C9A FAD doub 233 n y C9 H9 FAD sing 234 n n C9A N10 FAD sing 235 n n N10 C10 FAD sing 236 n n N10 C1' FAD sing 237 n n C1' C2' FAD sing 238 n n C1' "H1'1" FAD sing 239 n n C1' "H1'2" FAD sing 240 n n C2' O2' FAD sing 241 n n C2' C3' FAD sing 242 n n C2' H2' FAD sing 243 n n O2' HO2' FAD sing 244 n n C3' O3' FAD sing 245 n n C3' C4' FAD sing 246 n n C3' H3' FAD sing 247 n n O3' HO3' FAD sing 248 n n C4' O4' FAD sing 249 n n C4' C5' FAD sing 250 n n C4' H4' FAD sing 251 n n O4' HO4' FAD sing 252 n n C5' O5' FAD sing 253 n n C5' "H5'1" FAD sing 254 n n C5' "H5'2" FAD sing 255 n n O5' P FAD sing 256 n n P O1P FAD doub 257 n n P O2P FAD sing 258 n n P O3P FAD sing 259 n n O2P HOP2 FAD sing 260 n n # _atom_sites.entry_id 5OL2 _atom_sites.fract_transf_matrix[1][1] 0.005648 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005648 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 FAD A 1 401 401 FAD FAD . H 5 CA A 1 402 4 CA CA . I 4 FAD B 1 300 300 FAD FAD . J 4 FAD C 1 401 401 FAD FAD . K 6 COS C 1 402 501 COS COS . L 5 CA C 1 403 2 CA CA . M 4 FAD D 1 401 401 FAD FAD . N 5 CA D 1 402 1 CA CA . O 4 FAD E 1 301 300 FAD FAD . P 5 CA E 1 302 5 CA CA . Q 4 FAD F 1 401 401 FAD FAD . R 6 COS F 1 402 501 COS COS . S 5 CA F 1 403 3 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . G 4 -86.406 -42.414 26.534 1 116.78 ? PA FAD 401 A 1 HETATM 2 O O1A FAD . . . G 4 -87.382 -41.322 26.349 1 100.98 ? O1A FAD 401 A 1 HETATM 3 O O2A FAD . . . G 4 -85.559 -42.35 27.818 1 112.74 ? O2A FAD 401 A 1 HETATM 4 O O5B FAD . . . G 4 -87.43 -43.652 26.327 1 113.72 ? O5B FAD 401 A 1 HETATM 5 C C5B FAD . . . G 4 -87.016 -45.028 26.484 1 108.55 ? C5B FAD 401 A 1 HETATM 6 C C4B FAD . . . G 4 -88.249 -45.878 26.325 1 106.63 ? C4B FAD 401 A 1 HETATM 7 O O4B FAD . . . G 4 -87.896 -47.268 26.285 1 116.53 ? O4B FAD 401 A 1 HETATM 8 C C3B FAD . . . G 4 -89.318 -45.74 27.399 1 112.95 ? C3B FAD 401 A 1 HETATM 9 O O3B FAD . . . G 4 -90.532 -45.557 26.694 1 115.61 ? O3B FAD 401 A 1 HETATM 10 C C2B FAD . . . G 4 -89.307 -47.097 28.123 1 126.04 ? C2B FAD 401 A 1 HETATM 11 O O2B FAD . . . G 4 -90.647 -47.423 28.464 1 132.45 ? O2B FAD 401 A 1 HETATM 12 C C1B FAD . . . G 4 -88.857 -48.018 27.004 1 127.85 ? C1B FAD 401 A 1 HETATM 13 N N9A FAD . . . G 4 -88.212 -49.285 27.338 1 139.41 ? N9A FAD 401 A 1 HETATM 14 C C8A FAD . . . G 4 -87.047 -49.466 28.034 1 141.8 ? C8A FAD 401 A 1 HETATM 15 N N7A FAD . . . G 4 -86.604 -50.7 28.027 1 140.05 ? N7A FAD 401 A 1 HETATM 16 C C5A FAD . . . G 4 -87.517 -51.371 27.232 1 144.27 ? C5A FAD 401 A 1 HETATM 17 C C6A FAD . . . G 4 -87.608 -52.712 26.815 1 151.54 ? C6A FAD 401 A 1 HETATM 18 N N6A FAD . . . G 4 -86.742 -53.663 27.174 1 160.42 ? N6A FAD 401 A 1 HETATM 19 N N1A FAD . . . G 4 -88.642 -53.052 26.015 1 145.55 ? N1A FAD 401 A 1 HETATM 20 C C2A FAD . . . G 4 -89.515 -52.108 25.656 1 140.38 ? C2A FAD 401 A 1 HETATM 21 N N3A FAD . . . G 4 -89.53 -50.814 25.983 1 138.94 ? N3A FAD 401 A 1 HETATM 22 C C4A FAD . . . G 4 -88.499 -50.507 26.779 1 142.57 ? C4A FAD 401 A 1 HETATM 23 N N1 FAD . . . G 4 -83.972 -36.65 20.889 1 137.46 ? N1 FAD 401 A 1 HETATM 24 C C2 FAD . . . G 4 -83.991 -37.231 19.65 1 131.08 ? C2 FAD 401 A 1 HETATM 25 O O2 FAD . . . G 4 -84.347 -38.401 19.495 1 117.09 ? O2 FAD 401 A 1 HETATM 26 N N3 FAD . . . G 4 -83.599 -36.498 18.543 1 132.13 ? N3 FAD 401 A 1 HETATM 27 C C4 FAD . . . G 4 -83.165 -35.183 18.553 1 130.23 ? C4 FAD 401 A 1 HETATM 28 O O4 FAD . . . G 4 -82.83 -34.639 17.504 1 109.35 ? O4 FAD 401 A 1 HETATM 29 C C4X FAD . . . G 4 -83.158 -34.574 19.882 1 140.13 ? C4X FAD 401 A 1 HETATM 30 N N5 FAD . . . G 4 -82.768 -33.338 19.989 1 140.59 ? N5 FAD 401 A 1 HETATM 31 C C5X FAD . . . G 4 -82.775 -32.757 21.246 1 141.13 ? C5X FAD 401 A 1 HETATM 32 C C6 FAD . . . G 4 -82.346 -31.435 21.382 1 141.54 ? C6 FAD 401 A 1 HETATM 33 C C7 FAD . . . G 4 -82.307 -30.811 22.626 1 130.21 ? C7 FAD 401 A 1 HETATM 34 C C7M FAD . . . G 4 -81.841 -29.384 22.748 1 129.06 ? C7M FAD 401 A 1 HETATM 35 C C8 FAD . . . G 4 -82.727 -31.512 23.756 1 118.2 ? C8 FAD 401 A 1 HETATM 36 C C8M FAD . . . G 4 -82.698 -30.855 25.094 1 119.35 ? C8M FAD 401 A 1 HETATM 37 C C9 FAD . . . G 4 -83.154 -32.828 23.628 1 126.41 ? C9 FAD 401 A 1 HETATM 38 C C9A FAD . . . G 4 -83.176 -33.458 22.387 1 137.5 ? C9A FAD 401 A 1 HETATM 39 N N10 FAD . . . G 4 -83.607 -34.791 22.227 1 132.27 ? N10 FAD 401 A 1 HETATM 40 C C10 FAD . . . G 4 -83.587 -35.389 20.989 1 136.26 ? C10 FAD 401 A 1 HETATM 41 C C1' FAD . . . G 4 -83.972 -35.591 23.4 1 127.1 ? C1' FAD 401 A 1 HETATM 42 C C2' FAD . . . G 4 -85.418 -36.05 23.432 1 115.82 ? C2' FAD 401 A 1 HETATM 43 O O2' FAD . . . G 4 -86.234 -35.069 24.067 1 105.28 ? O2' FAD 401 A 1 HETATM 44 C C3' FAD . . . G 4 -85.477 -37.337 24.249 1 118.12 ? C3' FAD 401 A 1 HETATM 45 O O3' FAD . . . G 4 -84.473 -37.224 25.255 1 114.17 ? O3' FAD 401 A 1 HETATM 46 C C4' FAD . . . G 4 -85.301 -38.632 23.435 1 122.12 ? C4' FAD 401 A 1 HETATM 47 O O4' FAD . . . G 4 -86.558 -38.999 22.846 1 119.35 ? O4' FAD 401 A 1 HETATM 48 C C5' FAD . . . G 4 -84.684 -39.748 24.264 1 124.35 ? C5' FAD 401 A 1 HETATM 49 O O5' FAD . . . G 4 -84.587 -40.96 23.482 1 119.03 ? O5' FAD 401 A 1 HETATM 50 P P FAD . . . G 4 -85.498 -42.221 23.778 1 114.18 ? P FAD 401 A 1 HETATM 51 O O1P FAD . . . G 4 -86.982 -42.14 23.379 1 95.56 ? O1P FAD 401 A 1 HETATM 52 O O2P FAD . . . G 4 -84.887 -43.352 23.088 1 116.21 ? O2P FAD 401 A 1 HETATM 53 O O3P FAD . . . G 4 -85.352 -42.416 25.349 1 111.68 ? O3P FAD 401 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #