data_5OL2
#
_model_server_result.job_id            oPhcoBCCy6IFtfIp34412A 
_model_server_result.datetime_utc      '2024-12-03 12:45:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ol2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":401}' 
#
_entry.id    5OL2 
#
_exptl.entry_id    5OL2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OL2 
_cell.length_a            177.06 
_cell.length_b            177.06 
_cell.length_c            493.15 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OL2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L 1 1 
D,E,F,M,N,O,P,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
? 4 J N N 
? 4 M N N 
? 4 O N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B CG2 THR 22 B THR 27 1_555 K N1A COS . C COS 402 10_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 C NH2 ARG 242 C ARG 242 1_555 K O5P COS . C COS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 D ND1 HIS 280 D HIS 280 1_555 M O2 FAD . D FAD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale4 D ND2 ASN 294 D ASN 294 1_555 M O3B FAD . D FAD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 H CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc2 A OD1 ASP 188 A ASP 188 1_555 H CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc3 C OE1 GLU 29 C GLU 29 1_555 L CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? 
metalc ? metalc4 C OE1 GLU 33 C GLU 33 1_555 L CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? 
metalc ? metalc5 C OE2 GLU 33 C GLU 33 1_555 L CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? 
metalc ? metalc6 D OE2 GLU 75 D GLU 75 1_555 N CA CA . D CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc7 D OD1 ASP 188 D ASP 188 1_555 N CA CA . D CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc8 F OE1 GLU 29 F GLU 29 1_555 S CA CA . F CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc9 F OE1 GLU 33 F GLU 33 1_555 S CA CA . F CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? 
metalc ? metalc10 F OE2 GLU 33 F GLU 33 1_555 S CA CA . F CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 170 n n 
PA O2A FAD sing 171 n n 
PA O5B FAD sing 172 n n 
PA O3P FAD sing 173 n n 
O2A HOA2 FAD sing 174 n n 
O5B C5B FAD sing 175 n n 
C5B C4B FAD sing 176 n n 
C5B H51A FAD sing 177 n n 
C5B H52A FAD sing 178 n n 
C4B O4B FAD sing 179 n n 
C4B C3B FAD sing 180 n n 
C4B H4B FAD sing 181 n n 
O4B C1B FAD sing 182 n n 
C3B O3B FAD sing 183 n n 
C3B C2B FAD sing 184 n n 
C3B H3B FAD sing 185 n n 
O3B HO3A FAD sing 186 n n 
C2B O2B FAD sing 187 n n 
C2B C1B FAD sing 188 n n 
C2B H2B FAD sing 189 n n 
O2B HO2A FAD sing 190 n n 
C1B N9A FAD sing 191 n n 
C1B H1B FAD sing 192 n n 
N9A C8A FAD sing 193 n y 
N9A C4A FAD sing 194 n y 
C8A N7A FAD doub 195 n y 
C8A H8A FAD sing 196 n n 
N7A C5A FAD sing 197 n y 
C5A C6A FAD sing 198 n y 
C5A C4A FAD doub 199 n y 
C6A N6A FAD sing 200 n n 
C6A N1A FAD doub 201 n y 
N6A H61A FAD sing 202 n n 
N6A H62A FAD sing 203 n n 
N1A C2A FAD sing 204 n y 
C2A N3A FAD doub 205 n y 
C2A H2A FAD sing 206 n n 
N3A C4A FAD sing 207 n y 
N1 C2 FAD sing 208 n n 
N1 C10 FAD doub 209 n n 
C2 O2 FAD doub 210 n n 
C2 N3 FAD sing 211 n n 
N3 C4 FAD sing 212 n n 
N3 HN3 FAD sing 213 n n 
C4 O4 FAD doub 214 n n 
C4 C4X FAD sing 215 n n 
C4X N5 FAD doub 216 n n 
C4X C10 FAD sing 217 n n 
N5 C5X FAD sing 218 n n 
C5X C6 FAD doub 219 n y 
C5X C9A FAD sing 220 n y 
C6 C7 FAD sing 221 n y 
C6 H6 FAD sing 222 n n 
C7 C7M FAD sing 223 n n 
C7 C8 FAD doub 224 n y 
C7M HM71 FAD sing 225 n n 
C7M HM72 FAD sing 226 n n 
C7M HM73 FAD sing 227 n n 
C8 C8M FAD sing 228 n n 
C8 C9 FAD sing 229 n y 
C8M HM81 FAD sing 230 n n 
C8M HM82 FAD sing 231 n n 
C8M HM83 FAD sing 232 n n 
C9 C9A FAD doub 233 n y 
C9 H9 FAD sing 234 n n 
C9A N10 FAD sing 235 n n 
N10 C10 FAD sing 236 n n 
N10 C1' FAD sing 237 n n 
C1' C2' FAD sing 238 n n 
C1' "H1'1" FAD sing 239 n n 
C1' "H1'2" FAD sing 240 n n 
C2' O2' FAD sing 241 n n 
C2' C3' FAD sing 242 n n 
C2' H2' FAD sing 243 n n 
O2' HO2' FAD sing 244 n n 
C3' O3' FAD sing 245 n n 
C3' C4' FAD sing 246 n n 
C3' H3' FAD sing 247 n n 
O3' HO3' FAD sing 248 n n 
C4' O4' FAD sing 249 n n 
C4' C5' FAD sing 250 n n 
C4' H4' FAD sing 251 n n 
O4' HO4' FAD sing 252 n n 
C5' O5' FAD sing 253 n n 
C5' "H5'1" FAD sing 254 n n 
C5' "H5'2" FAD sing 255 n n 
O5' P FAD sing 256 n n 
P O1P FAD doub 257 n n 
P O2P FAD sing 258 n n 
P O3P FAD sing 259 n n 
O2P HOP2 FAD sing 260 n n 
#
_atom_sites.entry_id                     5OL2 
_atom_sites.fract_transf_matrix[1][1]    0.005648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005648 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 FAD A 1 401 401 FAD FAD . 
H 5 CA A 1 402 4 CA CA . 
I 4 FAD B 1 300 300 FAD FAD . 
J 4 FAD C 1 401 401 FAD FAD . 
K 6 COS C 1 402 501 COS COS . 
L 5 CA C 1 403 2 CA CA . 
M 4 FAD D 1 401 401 FAD FAD . 
N 5 CA D 1 402 1 CA CA . 
O 4 FAD E 1 301 300 FAD FAD . 
P 5 CA E 1 302 5 CA CA . 
Q 4 FAD F 1 401 401 FAD FAD . 
R 6 COS F 1 402 501 COS COS . 
S 5 CA F 1 403 3 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . M 4 -46.193 -3.446 19.5 1 133.24 ? PA FAD 401 D 1 
HETATM 2 O O1A FAD . . . M 4 -47.052 -2.245 19.582 1 105.97 ? O1A FAD 401 D 1 
HETATM 3 O O2A FAD . . . M 4 -46.204 -4.337 18.196 1 103.59 ? O2A FAD 401 D 1 
HETATM 4 O O5B FAD . . . M 4 -44.757 -2.778 19.838 1 139 ? O5B FAD 401 D 1 
HETATM 5 C C5B FAD . . . M 4 -44.162 -1.817 18.942 1 131.89 ? C5B FAD 401 D 1 
HETATM 6 C C4B FAD . . . M 4 -42.964 -1.124 19.526 1 127.53 ? C4B FAD 401 D 1 
HETATM 7 O O4B FAD . . . M 4 -41.767 -1.959 19.447 1 128.96 ? O4B FAD 401 D 1 
HETATM 8 C C3B FAD . . . M 4 -42.606 0.195 18.83 1 131.2 ? C3B FAD 401 D 1 
HETATM 9 O O3B FAD . . . M 4 -42.194 1.152 19.817 1 136.52 ? O3B FAD 401 D 1 
HETATM 10 C C2B FAD . . . M 4 -41.405 -0.216 17.973 1 134.47 ? C2B FAD 401 D 1 
HETATM 11 O O2B FAD . . . M 4 -40.631 0.922 17.635 1 142.62 ? O2B FAD 401 D 1 
HETATM 12 C C1B FAD . . . M 4 -40.723 -1.102 19.001 1 138.54 ? C1B FAD 401 D 1 
HETATM 13 N N9A FAD . . . M 4 -39.505 -1.854 18.654 1 153.69 ? N9A FAD 401 D 1 
HETATM 14 C C8A FAD . . . M 4 -39.398 -2.972 17.87 1 164.18 ? C8A FAD 401 D 1 
HETATM 15 N N7A FAD . . . M 4 -38.181 -3.462 17.793 1 167.9 ? N7A FAD 401 D 1 
HETATM 16 C C5A FAD . . . M 4 -37.435 -2.616 18.6 1 166.83 ? C5A FAD 401 D 1 
HETATM 17 C C6A FAD . . . M 4 -36.068 -2.594 18.946 1 167.43 ? C6A FAD 401 D 1 
HETATM 18 N N6A FAD . . . M 4 -35.179 -3.483 18.491 1 175.78 ? N6A FAD 401 D 1 
HETATM 19 N N1A FAD . . . M 4 -35.639 -1.61 19.781 1 149 ? N1A FAD 401 D 1 
HETATM 20 C C2A FAD . . . M 4 -36.521 -0.712 20.214 1 142.84 ? C2A FAD 401 D 1 
HETATM 21 N N3A FAD . . . M 4 -37.828 -0.638 19.95 1 153.74 ? N3A FAD 401 D 1 
HETATM 22 C C4A FAD . . . M 4 -38.233 -1.623 19.138 1 160.05 ? C4A FAD 401 D 1 
HETATM 23 N N1 FAD . . . M 4 -51.807 -5.111 25.278 1 144.75 ? N1 FAD 401 D 1 
HETATM 24 C C2 FAD . . . M 4 -51.266 -5.063 26.568 1 144.94 ? C2 FAD 401 D 1 
HETATM 25 O O2 FAD . . . M 4 -50.074 -4.612 26.926 1 131.67 ? O2 FAD 401 D 1 
HETATM 26 N N3 FAD . . . M 4 -52.123 -5.482 27.611 1 150.04 ? N3 FAD 401 D 1 
HETATM 27 C C4 FAD . . . M 4 -53.46 -5.928 27.497 1 139.71 ? C4 FAD 401 D 1 
HETATM 28 O O4 FAD . . . M 4 -54.119 -6.265 28.478 1 125.37 ? O4 FAD 401 D 1 
HETATM 29 C C4X FAD . . . M 4 -54.011 -5.961 26.187 1 144.69 ? C4X FAD 401 D 1 
HETATM 30 N N5 FAD . . . M 4 -55.236 -6.36 26.075 1 147.03 ? N5 FAD 401 D 1 
HETATM 31 C C5X FAD . . . M 4 -55.806 -6.402 24.831 1 145.89 ? C5X FAD 401 D 1 
HETATM 32 C C6 FAD . . . M 4 -57.126 -6.854 24.708 1 145.03 ? C6 FAD 401 D 1 
HETATM 33 C C7 FAD . . . M 4 -57.755 -6.941 23.466 1 136.47 ? C7 FAD 401 D 1 
HETATM 34 C C7M FAD . . . M 4 -59.179 -7.425 23.354 1 127.75 ? C7M FAD 401 D 1 
HETATM 35 C C8 FAD . . . M 4 -57.05 -6.559 22.323 1 129.86 ? C8 FAD 401 D 1 
HETATM 36 C C8M FAD . . . M 4 -57.709 -6.632 20.976 1 115.58 ? C8M FAD 401 D 1 
HETATM 37 C C9 FAD . . . M 4 -55.732 -6.119 22.444 1 135.24 ? C9 FAD 401 D 1 
HETATM 38 C C9A FAD . . . M 4 -55.109 -6.029 23.684 1 140.89 ? C9A FAD 401 D 1 
HETATM 39 N N10 FAD . . . M 4 -53.787 -5.561 23.824 1 137.66 ? N10 FAD 401 D 1 
HETATM 40 C C10 FAD . . . M 4 -53.165 -5.551 25.106 1 143.93 ? C10 FAD 401 D 1 
HETATM 41 C C1' FAD . . . M 4 -53.021 -5.299 22.616 1 127.65 ? C1' FAD 401 D 1 
HETATM 42 C C2' FAD . . . M 4 -52.646 -3.859 22.369 1 123.42 ? C2' FAD 401 D 1 
HETATM 43 O O2' FAD . . . M 4 -53.687 -3.127 21.717 1 98.98 ? O2' FAD 401 D 1 
HETATM 44 C C3' FAD . . . M 4 -51.376 -3.889 21.525 1 134.61 ? C3' FAD 401 D 1 
HETATM 45 O O3' FAD . . . M 4 -51.501 -4.977 20.607 1 130.38 ? O3' FAD 401 D 1 
HETATM 46 C C4' FAD . . . M 4 -50.187 -4.14 22.461 1 131.68 ? C4' FAD 401 D 1 
HETATM 47 O O4' FAD . . . M 4 -49.753 -2.929 23.097 1 111.8 ? O4' FAD 401 D 1 
HETATM 48 C C5' FAD . . . M 4 -49.062 -4.917 21.809 1 139.14 ? C5' FAD 401 D 1 
HETATM 49 O O5' FAD . . . M 4 -47.913 -4.9 22.682 1 139.2 ? O5' FAD 401 D 1 
HETATM 50 P P FAD . . . M 4 -46.567 -4.199 22.256 1 127.46 ? P FAD 401 D 1 
HETATM 51 O O1P FAD . . . M 4 -46.561 -2.688 22.556 1 120.67 ? O1P FAD 401 D 1 
HETATM 52 O O2P FAD . . . M 4 -45.566 -5.041 22.875 1 115.08 ? O2P FAD 401 D 1 
HETATM 53 O O3P FAD . . . M 4 -46.557 -4.439 20.68 1 132.17 ? O3P FAD 401 D 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    142 
_model_server_stats.query_time_ms           459 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           53 
#