data_5OL2
#
_model_server_result.job_id            gjBsDb0uPXcsIfy2z8UQ0A 
_model_server_result.datetime_utc      '2024-12-02 15:25:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ol2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":402}' 
#
_entry.id    5OL2 
#
_exptl.entry_id    5OL2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              799.599 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'COENZYME A PERSULFIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OL2 
_cell.length_a            177.06 
_cell.length_b            177.06 
_cell.length_c            493.15 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OL2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L 1 1 
D,E,F,M,N,O,P,Q,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B CG2 THR 22 B THR 27 1_555 K N1A COS . C COS 402 10_455 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 C NH2 ARG 242 C ARG 242 1_555 K O5P COS . C COS 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 D ND1 HIS 280 D HIS 280 1_555 M O2 FAD . D FAD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale4 D ND2 ASN 294 D ASN 294 1_555 M O3B FAD . D FAD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 H CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc2 A OD1 ASP 188 A ASP 188 1_555 H CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc3 C OE1 GLU 29 C GLU 29 1_555 L CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.899 ? 
metalc ? metalc4 C OE1 GLU 33 C GLU 33 1_555 L CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? 
metalc ? metalc5 C OE2 GLU 33 C GLU 33 1_555 L CA CA . C CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? 
metalc ? metalc6 D OE2 GLU 75 D GLU 75 1_555 N CA CA . D CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? 
metalc ? metalc7 D OD1 ASP 188 D ASP 188 1_555 N CA CA . D CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc8 F OE1 GLU 29 F GLU 29 1_555 S CA CA . F CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.632 ? 
metalc ? metalc9 F OE1 GLU 33 F GLU 33 1_555 S CA CA . F CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? 
metalc ? metalc10 F OE2 GLU 33 F GLU 33 1_555 S CA CA . F CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? 
#
_chem_comp.formula           'C21 H36 N7 O16 P3 S2' 
_chem_comp.formula_weight    799.599 
_chem_comp.id                COS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'COENZYME A PERSULFIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A COS sing 70 n y 
N1A C6A COS doub 71 n y 
C2A N3A COS doub 72 n y 
C2A H2A COS sing 73 n n 
N3A C4A COS sing 74 n y 
C4A C5A COS doub 75 n y 
C4A N9A COS sing 76 n y 
C5A C6A COS sing 77 n y 
C5A N7A COS sing 78 n y 
C6A N6A COS sing 79 n n 
N6A H61A COS sing 80 n n 
N6A H62A COS sing 81 n n 
N7A C8A COS doub 82 n y 
C8A N9A COS sing 83 n y 
C8A H8A COS sing 84 n n 
N9A C1B COS sing 85 n n 
C1B C2B COS sing 86 n n 
C1B O4B COS sing 87 n n 
C1B H1B COS sing 88 n n 
C2B O2B COS sing 89 n n 
C2B C3B COS sing 90 n n 
C2B H2B COS sing 91 n n 
O2B HO2A COS sing 92 n n 
C3B O3B COS sing 93 n n 
C3B C4B COS sing 94 n n 
C3B H3B COS sing 95 n n 
O3B P3B COS sing 96 n n 
P3B O7A COS doub 97 n n 
P3B O8A COS sing 98 n n 
P3B O9A COS sing 99 n n 
O8A HOA8 COS sing 100 n n 
O9A HOA9 COS sing 101 n n 
C4B O4B COS sing 102 n n 
C4B C5B COS sing 103 n n 
C4B H4B COS sing 104 n n 
C5B O5B COS sing 105 n n 
C5B H51A COS sing 106 n n 
C5B H52A COS sing 107 n n 
O5B P1A COS sing 108 n n 
P1A O1A COS doub 109 n n 
P1A O2A COS sing 110 n n 
P1A O3A COS sing 111 n n 
O2A HOA2 COS sing 112 n n 
O3A P2A COS sing 113 n n 
P2A O4A COS doub 114 n n 
P2A O5A COS sing 115 n n 
P2A O6A COS sing 116 n n 
O5A HOA5 COS sing 117 n n 
O6A CCP COS sing 118 n n 
CBP CCP COS sing 119 n n 
CBP CDP COS sing 120 n n 
CBP CEP COS sing 121 n n 
CBP CAP COS sing 122 n n 
CCP H121 COS sing 123 n n 
CCP H122 COS sing 124 n n 
CDP H131 COS sing 125 n n 
CDP H132 COS sing 126 n n 
CDP H133 COS sing 127 n n 
CEP H141 COS sing 128 n n 
CEP H142 COS sing 129 n n 
CEP H143 COS sing 130 n n 
CAP OAP COS sing 131 n n 
CAP C9P COS sing 132 n n 
CAP H10 COS sing 133 n n 
OAP HO1 COS sing 134 n n 
C9P O9P COS doub 135 n n 
C9P N8P COS sing 136 n n 
N8P C7P COS sing 137 n n 
N8P HN8 COS sing 138 n n 
C7P C6P COS sing 139 n n 
C7P H71 COS sing 140 n n 
C7P H72 COS sing 141 n n 
C6P C5P COS sing 142 n n 
C6P H61 COS sing 143 n n 
C6P H62 COS sing 144 n n 
C5P O5P COS doub 145 n n 
C5P N4P COS sing 146 n n 
N4P C3P COS sing 147 n n 
N4P HN4 COS sing 148 n n 
C3P C2P COS sing 149 n n 
C3P H31 COS sing 150 n n 
C3P H32 COS sing 151 n n 
C2P S1P COS sing 152 n n 
C2P H21 COS sing 153 n n 
C2P H22 COS sing 154 n n 
S1P "S'P" COS sing 155 n n 
"S'P" "HS'P" COS sing 156 n n 
#
_atom_sites.entry_id                     5OL2 
_atom_sites.fract_transf_matrix[1][1]    0.005648 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005648 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002028 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 FAD A 1 401 401 FAD FAD . 
H 5 CA A 1 402 4 CA CA . 
I 4 FAD B 1 300 300 FAD FAD . 
J 4 FAD C 1 401 401 FAD FAD . 
K 6 COS C 1 402 501 COS COS . 
L 5 CA C 1 403 2 CA CA . 
M 4 FAD D 1 401 401 FAD FAD . 
N 5 CA D 1 402 1 CA CA . 
O 4 FAD E 1 301 300 FAD FAD . 
P 5 CA E 1 302 5 CA CA . 
Q 4 FAD F 1 401 401 FAD FAD . 
R 6 COS F 1 402 501 COS COS . 
S 5 CA F 1 403 3 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A COS . . . K 6 -69.095 26.773 3.285 1 242.27 ? N1A COS 402 C 1 
HETATM 2 C C2A COS . . . K 6 -68.703 26.711 4.613 1 243.85 ? C2A COS 402 C 1 
HETATM 3 N N3A COS . . . K 6 -68.764 25.537 5.334 1 272.11 ? N3A COS 402 C 1 
HETATM 4 C C4A COS . . . K 6 -69.215 24.369 4.769 1 287.26 ? C4A COS 402 C 1 
HETATM 5 C C5A COS . . . K 6 -69.604 24.415 3.46 1 282.39 ? C5A COS 402 C 1 
HETATM 6 C C6A COS . . . K 6 -69.543 25.621 2.721 1 260.27 ? C6A COS 402 C 1 
HETATM 7 N N6A COS . . . K 6 -69.912 25.895 1.324 1 249.99 ? N6A COS 402 C 1 
HETATM 8 N N7A COS . . . K 6 -70.007 23.169 3.12 1 285.17 ? N7A COS 402 C 1 
HETATM 9 C C8A COS . . . K 6 -69.866 22.366 4.208 1 287.98 ? C8A COS 402 C 1 
HETATM 10 N N9A COS . . . K 6 -69.378 23.073 5.249 1 295.49 ? N9A COS 402 C 1 
HETATM 11 C C1B COS . . . K 6 -69.059 22.637 6.622 1 303.74 ? C1B COS 402 C 1 
HETATM 12 C C2B COS . . . K 6 -70.045 21.996 7.279 1 307.08 ? C2B COS 402 C 1 
HETATM 13 O O2B COS . . . K 6 -71.066 22.925 7.813 1 306.15 ? O2B COS 402 C 1 
HETATM 14 C C3B COS . . . K 6 -69.337 21.24 8.456 1 310.2 ? C3B COS 402 C 1 
HETATM 15 O O3B COS . . . K 6 -69.382 22.003 9.568 1 318.92 ? O3B COS 402 C 1 
HETATM 16 P P3B COS . . . K 6 -70.2 21.549 10.964 1 326.52 ? P3B COS 402 C 1 
HETATM 17 O O7A COS . . . K 6 -69.229 20.944 11.959 1 328.17 ? O7A COS 402 C 1 
HETATM 18 O O8A COS . . . K 6 -70.872 22.724 11.637 1 325.39 ? O8A COS 402 C 1 
HETATM 19 O O9A COS . . . K 6 -71.267 20.538 10.612 1 330.18 ? O9A COS 402 C 1 
HETATM 20 C C4B COS . . . K 6 -67.833 20.989 7.957 1 304.81 ? C4B COS 402 C 1 
HETATM 21 O O4B COS . . . K 6 -67.818 21.53 6.74 1 304.74 ? O4B COS 402 C 1 
HETATM 22 C C5B COS . . . K 6 -67.346 19.495 7.931 1 299.23 ? C5B COS 402 C 1 
HETATM 23 O O5B COS . . . K 6 -66.62 18.97 9.063 1 294.13 ? O5B COS 402 C 1 
HETATM 24 P P1A COS . . . K 6 -65.398 17.812 8.959 1 290.39 ? P1A COS 402 C 1 
HETATM 25 O O1A COS . . . K 6 -65.24 17.412 7.518 1 295.27 ? O1A COS 402 C 1 
HETATM 26 O O2A COS . . . K 6 -64.123 18.489 9.411 1 292.06 ? O2A COS 402 C 1 
HETATM 27 O O3A COS . . . K 6 -65.533 16.406 9.927 1 276.12 ? O3A COS 402 C 1 
HETATM 28 P P2A COS . . . K 6 -65.159 14.76 9.615 1 258.1 ? P2A COS 402 C 1 
HETATM 29 O O4A COS . . . K 6 -64.916 14.54 8.151 1 258.81 ? O4A COS 402 C 1 
HETATM 30 O O5A COS . . . K 6 -66.332 13.905 10.024 1 255.53 ? O5A COS 402 C 1 
HETATM 31 O O6A COS . . . K 6 -63.847 14.122 10.397 1 247.91 ? O6A COS 402 C 1 
HETATM 32 C CBP COS . . . K 6 -64.038 11.68 11.072 1 233.61 ? CBP COS 402 C 1 
HETATM 33 C CCP COS . . . K 6 -64.025 13.181 11.465 1 241.05 ? CCP COS 402 C 1 
HETATM 34 C CDP COS . . . K 6 -64.259 11.519 9.56 1 239.91 ? CDP COS 402 C 1 
HETATM 35 C CEP COS . . . K 6 -62.702 11.015 11.485 1 229.83 ? CEP COS 402 C 1 
HETATM 36 C CAP COS . . . K 6 -65.221 10.997 11.801 1 218.95 ? CAP COS 402 C 1 
HETATM 37 O OAP COS . . . K 6 -66.19 11.994 11.95 1 224.65 ? OAP COS 402 C 1 
HETATM 38 C C9P COS . . . K 6 -65.912 9.736 11.158 1 191.74 ? C9P COS 402 C 1 
HETATM 39 O O9P COS . . . K 6 -66.994 9.863 10.697 1 184.18 ? O9P COS 402 C 1 
HETATM 40 N N8P COS . . . K 6 -65.324 8.346 11.136 1 172.65 ? N8P COS 402 C 1 
HETATM 41 C C7P COS . . . K 6 -66.113 7.209 10.505 1 160.74 ? C7P COS 402 C 1 
HETATM 42 C C6P COS . . . K 6 -65.348 5.836 10.528 1 156.18 ? C6P COS 402 C 1 
HETATM 43 C C5P COS . . . K 6 -66.038 4.412 10.285 1 153.99 ? C5P COS 402 C 1 
HETATM 44 O O5P COS . . . K 6 -67.16 4.142 9.691 1 145.8 ? O5P COS 402 C 1 
HETATM 45 N N4P COS . . . K 6 -65.119 3.361 10.836 1 146.31 ? N4P COS 402 C 1 
HETATM 46 C C3P COS . . . K 6 -65.395 1.938 10.794 1 149.54 ? C3P COS 402 C 1 
HETATM 47 C C2P COS . . . K 6 -64.275 1.175 10.034 1 167.51 ? C2P COS 402 C 1 
HETATM 48 S S1P COS . . . K 6 -64.279 -0.578 10.559 1 182.16 ? S1P COS 402 C 1 
HETATM 49 S "S'P" COS . . . K 6 -64.427 -2.183 9.148 1 154.47 ? "S'P" COS 402 C 1 
#
_model_server_stats.io_time_ms              141 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    212 
_model_server_stats.query_time_ms           371 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           49 
#