data_5OL8 # _model_server_result.job_id WcRswiTmrsLeAXSBCyjWGw _model_server_result.datetime_utc '2024-12-23 06:38:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ol8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5OL8 # _exptl.entry_id 5OL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.13 _cell.angle_gamma 90 _cell.entry_id 5OL8 _cell.length_a 98.48 _cell.length_b 112.54 _cell.length_c 88.84 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5OL8 _atom_sites.fract_transf_matrix[1][1] 0.010154 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003722 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008886 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GOL A 1 401 4 GOL GOL . F 2 GOL A 1 402 5 GOL GOL . G 2 GOL D 1 401 2 GOL GOL . H 2 GOL D 1 402 3 GOL GOL . I 3 HOH A 1 501 27 HOH HOH . I 3 HOH A 2 502 64 HOH HOH . I 3 HOH A 3 503 122 HOH HOH . I 3 HOH A 4 504 14 HOH HOH . I 3 HOH A 5 505 95 HOH HOH . I 3 HOH A 6 506 116 HOH HOH . I 3 HOH A 7 507 65 HOH HOH . I 3 HOH A 8 508 78 HOH HOH . I 3 HOH A 9 509 16 HOH HOH . I 3 HOH A 10 510 30 HOH HOH . I 3 HOH A 11 511 121 HOH HOH . I 3 HOH A 12 512 26 HOH HOH . I 3 HOH A 13 513 29 HOH HOH . I 3 HOH A 14 514 46 HOH HOH . I 3 HOH A 15 515 70 HOH HOH . I 3 HOH A 16 516 37 HOH HOH . I 3 HOH A 17 517 15 HOH HOH . I 3 HOH A 18 518 50 HOH HOH . I 3 HOH A 19 519 127 HOH HOH . I 3 HOH A 20 520 21 HOH HOH . I 3 HOH A 21 521 66 HOH HOH . I 3 HOH A 22 522 108 HOH HOH . I 3 HOH A 23 523 117 HOH HOH . I 3 HOH A 24 524 89 HOH HOH . I 3 HOH A 25 525 6 HOH HOH . I 3 HOH A 26 526 103 HOH HOH . I 3 HOH A 27 527 93 HOH HOH . I 3 HOH A 28 528 72 HOH HOH . I 3 HOH A 29 529 71 HOH HOH . I 3 HOH A 30 530 54 HOH HOH . I 3 HOH A 31 531 19 HOH HOH . I 3 HOH A 32 532 77 HOH HOH . I 3 HOH A 33 533 33 HOH HOH . I 3 HOH A 34 534 80 HOH HOH . I 3 HOH A 35 535 97 HOH HOH . I 3 HOH A 36 536 106 HOH HOH . I 3 HOH A 37 537 125 HOH HOH . I 3 HOH A 38 538 79 HOH HOH . J 3 HOH B 1 401 114 HOH HOH . J 3 HOH B 2 402 38 HOH HOH . J 3 HOH B 3 403 123 HOH HOH . J 3 HOH B 4 404 96 HOH HOH . J 3 HOH B 5 405 10 HOH HOH . J 3 HOH B 6 406 23 HOH HOH . J 3 HOH B 7 407 7 HOH HOH . J 3 HOH B 8 408 55 HOH HOH . J 3 HOH B 9 409 47 HOH HOH . J 3 HOH B 10 410 22 HOH HOH . J 3 HOH B 11 411 53 HOH HOH . J 3 HOH B 12 412 39 HOH HOH . J 3 HOH B 13 413 41 HOH HOH . J 3 HOH B 14 414 9 HOH HOH . J 3 HOH B 15 415 20 HOH HOH . J 3 HOH B 16 416 57 HOH HOH . J 3 HOH B 17 417 115 HOH HOH . J 3 HOH B 18 418 84 HOH HOH . J 3 HOH B 19 419 4 HOH HOH . J 3 HOH B 20 420 67 HOH HOH . J 3 HOH B 21 421 40 HOH HOH . J 3 HOH B 22 422 58 HOH HOH . J 3 HOH B 23 423 24 HOH HOH . J 3 HOH B 24 424 74 HOH HOH . J 3 HOH B 25 425 56 HOH HOH . J 3 HOH B 26 426 111 HOH HOH . J 3 HOH B 27 427 12 HOH HOH . J 3 HOH B 28 428 91 HOH HOH . J 3 HOH B 29 429 100 HOH HOH . K 3 HOH C 1 401 61 HOH HOH . K 3 HOH C 2 402 113 HOH HOH . K 3 HOH C 3 403 87 HOH HOH . K 3 HOH C 4 404 18 HOH HOH . K 3 HOH C 5 405 17 HOH HOH . K 3 HOH C 6 406 45 HOH HOH . K 3 HOH C 7 407 51 HOH HOH . K 3 HOH C 8 408 68 HOH HOH . K 3 HOH C 9 409 94 HOH HOH . K 3 HOH C 10 410 69 HOH HOH . K 3 HOH C 11 411 99 HOH HOH . K 3 HOH C 12 412 2 HOH HOH . K 3 HOH C 13 413 110 HOH HOH . K 3 HOH C 14 414 1 HOH HOH . K 3 HOH C 15 415 31 HOH HOH . K 3 HOH C 16 416 3 HOH HOH . K 3 HOH C 17 417 75 HOH HOH . K 3 HOH C 18 418 73 HOH HOH . K 3 HOH C 19 419 59 HOH HOH . K 3 HOH C 20 420 36 HOH HOH . K 3 HOH C 21 421 63 HOH HOH . K 3 HOH C 22 422 88 HOH HOH . K 3 HOH C 23 423 60 HOH HOH . K 3 HOH C 24 424 112 HOH HOH . K 3 HOH C 25 425 105 HOH HOH . K 3 HOH C 26 426 81 HOH HOH . K 3 HOH C 27 427 124 HOH HOH . K 3 HOH C 28 428 85 HOH HOH . K 3 HOH C 29 429 102 HOH HOH . K 3 HOH C 30 430 35 HOH HOH . K 3 HOH C 31 431 98 HOH HOH . K 3 HOH C 32 432 126 HOH HOH . K 3 HOH C 33 433 101 HOH HOH . K 3 HOH C 34 434 90 HOH HOH . L 3 HOH D 1 501 120 HOH HOH . L 3 HOH D 2 502 104 HOH HOH . L 3 HOH D 3 503 119 HOH HOH . L 3 HOH D 4 504 109 HOH HOH . L 3 HOH D 5 505 13 HOH HOH . L 3 HOH D 6 506 48 HOH HOH . L 3 HOH D 7 507 118 HOH HOH . L 3 HOH D 8 508 8 HOH HOH . L 3 HOH D 9 509 11 HOH HOH . L 3 HOH D 10 510 62 HOH HOH . L 3 HOH D 11 511 83 HOH HOH . L 3 HOH D 12 512 82 HOH HOH . L 3 HOH D 13 513 52 HOH HOH . L 3 HOH D 14 514 42 HOH HOH . L 3 HOH D 15 515 76 HOH HOH . L 3 HOH D 16 516 44 HOH HOH . L 3 HOH D 17 517 28 HOH HOH . L 3 HOH D 18 518 86 HOH HOH . L 3 HOH D 19 519 5 HOH HOH . L 3 HOH D 20 520 34 HOH HOH . L 3 HOH D 21 521 49 HOH HOH . L 3 HOH D 22 522 107 HOH HOH . L 3 HOH D 23 523 43 HOH HOH . L 3 HOH D 24 524 25 HOH HOH . L 3 HOH D 25 525 128 HOH HOH . L 3 HOH D 26 526 32 HOH HOH . L 3 HOH D 27 527 129 HOH HOH . L 3 HOH D 28 528 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 -4.436 98.217 -29.199 1 73.32 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . E 2 -3.964 97.4 -30.245 1 76.37 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . E 2 -3.67 99.529 -29.256 1 72.98 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . E 2 -4.467 100.574 -28.744 1 71.38 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . E 2 -3.32 99.799 -30.712 1 74.46 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . E 2 -2.038 100.376 -30.779 1 75.92 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #