data_5OL8
#
_model_server_result.job_id            z3VFPtyTul6B7o9dVRsPkA 
_model_server_result.datetime_utc      '2024-11-14 17:26:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ol8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    5OL8 
#
_exptl.entry_id    5OL8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.13 
_cell.angle_gamma         90 
_cell.entry_id            5OL8 
_cell.length_a            98.48 
_cell.length_b            112.54 
_cell.length_c            88.84 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OL8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5OL8 
_atom_sites.fract_transf_matrix[1][1]    0.010154 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003722 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011988 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 401 4 GOL GOL . 
F 2 GOL A 1 402 5 GOL GOL . 
G 2 GOL D 1 401 2 GOL GOL . 
H 2 GOL D 1 402 3 GOL GOL . 
I 3 HOH A 1 501 27 HOH HOH . 
I 3 HOH A 2 502 64 HOH HOH . 
I 3 HOH A 3 503 122 HOH HOH . 
I 3 HOH A 4 504 14 HOH HOH . 
I 3 HOH A 5 505 95 HOH HOH . 
I 3 HOH A 6 506 116 HOH HOH . 
I 3 HOH A 7 507 65 HOH HOH . 
I 3 HOH A 8 508 78 HOH HOH . 
I 3 HOH A 9 509 16 HOH HOH . 
I 3 HOH A 10 510 30 HOH HOH . 
I 3 HOH A 11 511 121 HOH HOH . 
I 3 HOH A 12 512 26 HOH HOH . 
I 3 HOH A 13 513 29 HOH HOH . 
I 3 HOH A 14 514 46 HOH HOH . 
I 3 HOH A 15 515 70 HOH HOH . 
I 3 HOH A 16 516 37 HOH HOH . 
I 3 HOH A 17 517 15 HOH HOH . 
I 3 HOH A 18 518 50 HOH HOH . 
I 3 HOH A 19 519 127 HOH HOH . 
I 3 HOH A 20 520 21 HOH HOH . 
I 3 HOH A 21 521 66 HOH HOH . 
I 3 HOH A 22 522 108 HOH HOH . 
I 3 HOH A 23 523 117 HOH HOH . 
I 3 HOH A 24 524 89 HOH HOH . 
I 3 HOH A 25 525 6 HOH HOH . 
I 3 HOH A 26 526 103 HOH HOH . 
I 3 HOH A 27 527 93 HOH HOH . 
I 3 HOH A 28 528 72 HOH HOH . 
I 3 HOH A 29 529 71 HOH HOH . 
I 3 HOH A 30 530 54 HOH HOH . 
I 3 HOH A 31 531 19 HOH HOH . 
I 3 HOH A 32 532 77 HOH HOH . 
I 3 HOH A 33 533 33 HOH HOH . 
I 3 HOH A 34 534 80 HOH HOH . 
I 3 HOH A 35 535 97 HOH HOH . 
I 3 HOH A 36 536 106 HOH HOH . 
I 3 HOH A 37 537 125 HOH HOH . 
I 3 HOH A 38 538 79 HOH HOH . 
J 3 HOH B 1 401 114 HOH HOH . 
J 3 HOH B 2 402 38 HOH HOH . 
J 3 HOH B 3 403 123 HOH HOH . 
J 3 HOH B 4 404 96 HOH HOH . 
J 3 HOH B 5 405 10 HOH HOH . 
J 3 HOH B 6 406 23 HOH HOH . 
J 3 HOH B 7 407 7 HOH HOH . 
J 3 HOH B 8 408 55 HOH HOH . 
J 3 HOH B 9 409 47 HOH HOH . 
J 3 HOH B 10 410 22 HOH HOH . 
J 3 HOH B 11 411 53 HOH HOH . 
J 3 HOH B 12 412 39 HOH HOH . 
J 3 HOH B 13 413 41 HOH HOH . 
J 3 HOH B 14 414 9 HOH HOH . 
J 3 HOH B 15 415 20 HOH HOH . 
J 3 HOH B 16 416 57 HOH HOH . 
J 3 HOH B 17 417 115 HOH HOH . 
J 3 HOH B 18 418 84 HOH HOH . 
J 3 HOH B 19 419 4 HOH HOH . 
J 3 HOH B 20 420 67 HOH HOH . 
J 3 HOH B 21 421 40 HOH HOH . 
J 3 HOH B 22 422 58 HOH HOH . 
J 3 HOH B 23 423 24 HOH HOH . 
J 3 HOH B 24 424 74 HOH HOH . 
J 3 HOH B 25 425 56 HOH HOH . 
J 3 HOH B 26 426 111 HOH HOH . 
J 3 HOH B 27 427 12 HOH HOH . 
J 3 HOH B 28 428 91 HOH HOH . 
J 3 HOH B 29 429 100 HOH HOH . 
K 3 HOH C 1 401 61 HOH HOH . 
K 3 HOH C 2 402 113 HOH HOH . 
K 3 HOH C 3 403 87 HOH HOH . 
K 3 HOH C 4 404 18 HOH HOH . 
K 3 HOH C 5 405 17 HOH HOH . 
K 3 HOH C 6 406 45 HOH HOH . 
K 3 HOH C 7 407 51 HOH HOH . 
K 3 HOH C 8 408 68 HOH HOH . 
K 3 HOH C 9 409 94 HOH HOH . 
K 3 HOH C 10 410 69 HOH HOH . 
K 3 HOH C 11 411 99 HOH HOH . 
K 3 HOH C 12 412 2 HOH HOH . 
K 3 HOH C 13 413 110 HOH HOH . 
K 3 HOH C 14 414 1 HOH HOH . 
K 3 HOH C 15 415 31 HOH HOH . 
K 3 HOH C 16 416 3 HOH HOH . 
K 3 HOH C 17 417 75 HOH HOH . 
K 3 HOH C 18 418 73 HOH HOH . 
K 3 HOH C 19 419 59 HOH HOH . 
K 3 HOH C 20 420 36 HOH HOH . 
K 3 HOH C 21 421 63 HOH HOH . 
K 3 HOH C 22 422 88 HOH HOH . 
K 3 HOH C 23 423 60 HOH HOH . 
K 3 HOH C 24 424 112 HOH HOH . 
K 3 HOH C 25 425 105 HOH HOH . 
K 3 HOH C 26 426 81 HOH HOH . 
K 3 HOH C 27 427 124 HOH HOH . 
K 3 HOH C 28 428 85 HOH HOH . 
K 3 HOH C 29 429 102 HOH HOH . 
K 3 HOH C 30 430 35 HOH HOH . 
K 3 HOH C 31 431 98 HOH HOH . 
K 3 HOH C 32 432 126 HOH HOH . 
K 3 HOH C 33 433 101 HOH HOH . 
K 3 HOH C 34 434 90 HOH HOH . 
L 3 HOH D 1 501 120 HOH HOH . 
L 3 HOH D 2 502 104 HOH HOH . 
L 3 HOH D 3 503 119 HOH HOH . 
L 3 HOH D 4 504 109 HOH HOH . 
L 3 HOH D 5 505 13 HOH HOH . 
L 3 HOH D 6 506 48 HOH HOH . 
L 3 HOH D 7 507 118 HOH HOH . 
L 3 HOH D 8 508 8 HOH HOH . 
L 3 HOH D 9 509 11 HOH HOH . 
L 3 HOH D 10 510 62 HOH HOH . 
L 3 HOH D 11 511 83 HOH HOH . 
L 3 HOH D 12 512 82 HOH HOH . 
L 3 HOH D 13 513 52 HOH HOH . 
L 3 HOH D 14 514 42 HOH HOH . 
L 3 HOH D 15 515 76 HOH HOH . 
L 3 HOH D 16 516 44 HOH HOH . 
L 3 HOH D 17 517 28 HOH HOH . 
L 3 HOH D 18 518 86 HOH HOH . 
L 3 HOH D 19 519 5 HOH HOH . 
L 3 HOH D 20 520 34 HOH HOH . 
L 3 HOH D 21 521 49 HOH HOH . 
L 3 HOH D 22 522 107 HOH HOH . 
L 3 HOH D 23 523 43 HOH HOH . 
L 3 HOH D 24 524 25 HOH HOH . 
L 3 HOH D 25 525 128 HOH HOH . 
L 3 HOH D 26 526 32 HOH HOH . 
L 3 HOH D 27 527 129 HOH HOH . 
L 3 HOH D 28 528 92 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 2 -44.206 119.755 -72.235 1 82.66 ? C1 GOL 402 D 1 
HETATM 2 O O1 GOL . . . H 2 -44.811 120.325 -71.095 1 78.36 ? O1 GOL 402 D 1 
HETATM 3 C C2 GOL . . . H 2 -45.232 119.529 -73.346 1 80.71 ? C2 GOL 402 D 1 
HETATM 4 O O2 GOL . . . H 2 -46.501 120.002 -72.952 1 79.46 ? O2 GOL 402 D 1 
HETATM 5 C C3 GOL . . . H 2 -45.329 118.041 -73.659 1 78.4 ? C3 GOL 402 D 1 
HETATM 6 O O3 GOL . . . H 2 -44.053 117.547 -74.001 1 70.31 ? O3 GOL 402 D 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#