data_5OLC # _model_server_result.job_id Q0-mB-dezOXSX3LjVpolNQ _model_server_result.datetime_utc '2024-11-05 00:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5olc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 5OLC # _exptl.entry_id 5OLC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.38 _cell.angle_gamma 90 _cell.entry_id 5OLC _cell.length_a 85.84 _cell.length_b 154.07 _cell.length_c 150.87 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OD1 ASP 202 C ASP 194 1_555 I MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc2 C OD2 ASP 202 C ASP 194 1_555 I MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc3 C OE2 GLU 228 C GLU 220 1_555 I MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc4 C OE1 GLU 254 C GLU 246 1_555 I MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc5 I MG MG . C MG 401 1_555 P O HOH . C HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc6 D OD2 ASP 202 D ASP 194 1_555 J MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc7 D OE2 GLU 228 D GLU 220 1_555 J MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc8 D OE1 GLU 254 D GLU 246 1_555 J MG MG . D MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc9 F OD1 ASP 202 F ASP 194 1_555 K MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc10 F OD2 ASP 202 F ASP 194 1_555 K MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 F OE2 GLU 228 F GLU 220 1_555 K MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc12 F OE1 GLU 254 F GLU 246 1_555 K MG MG . F MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc13 G OD2 ASP 202 G ASP 194 1_555 L MG MG . G MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc14 G OE2 GLU 228 G GLU 220 1_555 L MG MG . G MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc15 G OE1 GLU 254 G GLU 246 1_555 L MG MG . G MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc16 H OD2 ASP 202 H ASP 194 1_555 M MG MG . H MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc17 H OE2 GLU 228 H GLU 220 1_555 M MG MG . H MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc18 H OE1 GLU 254 H GLU 246 1_555 M MG MG . H MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc19 M MG MG . H MG 401 1_555 U O HOH . H HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OLC _atom_sites.fract_transf_matrix[1][1] 0.01165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002987 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006843 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MG C 1 401 2 MG MG . J 2 MG D 1 401 3 MG MG . K 2 MG F 1 401 4 MG MG . L 2 MG G 1 401 1 MG MG . M 2 MG H 1 401 5 MG MG . N 3 HOH A 1 401 50 HOH HOH . N 3 HOH A 2 402 54 HOH HOH . N 3 HOH A 3 403 71 HOH HOH . N 3 HOH A 4 404 72 HOH HOH . N 3 HOH A 5 405 62 HOH HOH . N 3 HOH A 6 406 61 HOH HOH . N 3 HOH A 7 407 42 HOH HOH . N 3 HOH A 8 408 10 HOH HOH . N 3 HOH A 9 409 17 HOH HOH . N 3 HOH A 10 410 59 HOH HOH . N 3 HOH A 11 411 67 HOH HOH . N 3 HOH A 12 412 83 HOH HOH . N 3 HOH A 13 413 15 HOH HOH . O 3 HOH B 1 401 49 HOH HOH . O 3 HOH B 2 402 29 HOH HOH . O 3 HOH B 3 403 36 HOH HOH . O 3 HOH B 4 404 52 HOH HOH . O 3 HOH B 5 405 79 HOH HOH . O 3 HOH B 6 406 74 HOH HOH . O 3 HOH B 7 407 84 HOH HOH . O 3 HOH B 8 408 75 HOH HOH . O 3 HOH B 9 409 1 HOH HOH . P 3 HOH C 1 501 26 HOH HOH . P 3 HOH C 2 502 91 HOH HOH . P 3 HOH C 3 503 11 HOH HOH . P 3 HOH C 4 504 86 HOH HOH . P 3 HOH C 5 505 47 HOH HOH . P 3 HOH C 6 506 78 HOH HOH . P 3 HOH C 7 507 63 HOH HOH . P 3 HOH C 8 508 13 HOH HOH . P 3 HOH C 9 509 85 HOH HOH . P 3 HOH C 10 510 27 HOH HOH . P 3 HOH C 11 511 44 HOH HOH . P 3 HOH C 12 512 38 HOH HOH . Q 3 HOH D 1 501 68 HOH HOH . Q 3 HOH D 2 502 40 HOH HOH . Q 3 HOH D 3 503 12 HOH HOH . Q 3 HOH D 4 504 46 HOH HOH . Q 3 HOH D 5 505 89 HOH HOH . Q 3 HOH D 6 506 57 HOH HOH . Q 3 HOH D 7 507 35 HOH HOH . Q 3 HOH D 8 508 23 HOH HOH . R 3 HOH E 1 401 3 HOH HOH . R 3 HOH E 2 402 28 HOH HOH . R 3 HOH E 3 403 43 HOH HOH . R 3 HOH E 4 404 80 HOH HOH . R 3 HOH E 5 405 81 HOH HOH . R 3 HOH E 6 406 65 HOH HOH . R 3 HOH E 7 407 33 HOH HOH . R 3 HOH E 8 408 48 HOH HOH . R 3 HOH E 9 409 32 HOH HOH . S 3 HOH F 1 501 30 HOH HOH . S 3 HOH F 2 502 77 HOH HOH . S 3 HOH F 3 503 19 HOH HOH . S 3 HOH F 4 504 4 HOH HOH . S 3 HOH F 5 505 16 HOH HOH . S 3 HOH F 6 506 73 HOH HOH . S 3 HOH F 7 507 9 HOH HOH . S 3 HOH F 8 508 14 HOH HOH . S 3 HOH F 9 509 39 HOH HOH . S 3 HOH F 10 510 24 HOH HOH . S 3 HOH F 11 511 34 HOH HOH . T 3 HOH G 1 501 76 HOH HOH . T 3 HOH G 2 502 8 HOH HOH . T 3 HOH G 3 503 66 HOH HOH . T 3 HOH G 4 504 88 HOH HOH . T 3 HOH G 5 505 6 HOH HOH . T 3 HOH G 6 506 58 HOH HOH . T 3 HOH G 7 507 55 HOH HOH . T 3 HOH G 8 508 60 HOH HOH . T 3 HOH G 9 509 25 HOH HOH . T 3 HOH G 10 510 20 HOH HOH . T 3 HOH G 11 511 41 HOH HOH . T 3 HOH G 12 512 82 HOH HOH . T 3 HOH G 13 513 56 HOH HOH . T 3 HOH G 14 514 21 HOH HOH . T 3 HOH G 15 515 2 HOH HOH . T 3 HOH G 16 516 90 HOH HOH . T 3 HOH G 17 517 69 HOH HOH . T 3 HOH G 18 518 37 HOH HOH . T 3 HOH G 19 519 5 HOH HOH . U 3 HOH H 1 501 70 HOH HOH . U 3 HOH H 2 502 92 HOH HOH . U 3 HOH H 3 503 31 HOH HOH . U 3 HOH H 4 504 18 HOH HOH . U 3 HOH H 5 505 45 HOH HOH . U 3 HOH H 6 506 51 HOH HOH . U 3 HOH H 7 507 22 HOH HOH . U 3 HOH H 8 508 53 HOH HOH . U 3 HOH H 9 509 87 HOH HOH . U 3 HOH H 10 510 64 HOH HOH . U 3 HOH H 11 511 7 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 2 _atom_site.Cartn_x -20.492 _atom_site.Cartn_y -18.769 _atom_site.Cartn_z -27.862 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.94 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #