data_5OLE # _model_server_result.job_id SBA3Smzz0RaWCgn5T3L5Wg _model_server_result.datetime_utc '2024-11-25 14:41:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ole # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":212}' # _entry.id 5OLE # _exptl.entry_id 5OLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PLATINUM (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OLE _cell.length_a 77.387 _cell.length_b 77.387 _cell.length_c 37.626 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 A NH2 ARG 14 A ARG 14 1_555 M PT PT . A PT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A ND1 HIS 15 A HIS 15 1_555 L PT PT . A PT 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc3 I S DMS . A DMS 208 1_555 M PT PT . A PT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc4 J S DMS . A DMS 209 1_555 L PT PT . A PT 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc5 K S DMS . A DMS 210 1_555 L PT PT . A PT 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc6 L PT PT . A PT 211 1_555 O O HOH . A HOH 397 7_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc7 M PT PT . A PT 212 1_555 O O HOH . A HOH 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? # _chem_comp.formula 'Pt 2' _chem_comp.formula_weight 195.078 _chem_comp.id PT _chem_comp.mon_nstd_flag . _chem_comp.name 'PLATINUM (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OLE _atom_sites.fract_transf_matrix[1][1] 0.012922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 302 EDO EDO . C 3 NO3 A 1 202 401 NO3 NO3 . D 3 NO3 A 1 203 408 NO3 NO3 . E 3 NO3 A 1 204 404 NO3 NO3 . F 3 NO3 A 1 205 405 NO3 NO3 . G 3 NO3 A 1 206 406 NO3 NO3 . H 3 NO3 A 1 207 407 NO3 NO3 . I 4 DMS A 1 208 1 DMS DMS . J 4 DMS A 1 209 2 DMS DMS . K 4 DMS A 1 210 3 DMS DMS . L 5 PT A 1 211 1 PT PT . M 5 PT A 1 212 2 PT PT . N 2 EDO A 1 213 1 EDO EDO . O 6 HOH A 1 301 113 HOH HOH . O 6 HOH A 2 302 106 HOH HOH . O 6 HOH A 3 303 115 HOH HOH . O 6 HOH A 4 304 72 HOH HOH . O 6 HOH A 5 305 51 HOH HOH . O 6 HOH A 6 306 62 HOH HOH . O 6 HOH A 7 307 23 HOH HOH . O 6 HOH A 8 308 211 HOH HOH . O 6 HOH A 9 309 13 HOH HOH . O 6 HOH A 10 310 49 HOH HOH . O 6 HOH A 11 311 151 HOH HOH . O 6 HOH A 12 312 185 HOH HOH . O 6 HOH A 13 313 181 HOH HOH . O 6 HOH A 14 314 166 HOH HOH . O 6 HOH A 15 315 4 HOH HOH . O 6 HOH A 16 316 63 HOH HOH . O 6 HOH A 17 317 160 HOH HOH . O 6 HOH A 18 318 40 HOH HOH . O 6 HOH A 19 319 15 HOH HOH . O 6 HOH A 20 320 76 HOH HOH . O 6 HOH A 21 321 16 HOH HOH . O 6 HOH A 22 322 70 HOH HOH . O 6 HOH A 23 323 22 HOH HOH . O 6 HOH A 24 324 9 HOH HOH . O 6 HOH A 25 325 42 HOH HOH . O 6 HOH A 26 326 207 HOH HOH . O 6 HOH A 27 327 59 HOH HOH . O 6 HOH A 28 328 114 HOH HOH . O 6 HOH A 29 329 24 HOH HOH . O 6 HOH A 30 330 155 HOH HOH . O 6 HOH A 31 331 175 HOH HOH . O 6 HOH A 32 332 21 HOH HOH . O 6 HOH A 33 333 2 HOH HOH . O 6 HOH A 34 334 26 HOH HOH . O 6 HOH A 35 335 171 HOH HOH . O 6 HOH A 36 336 194 HOH HOH . O 6 HOH A 37 337 18 HOH HOH . O 6 HOH A 38 338 10 HOH HOH . O 6 HOH A 39 339 186 HOH HOH . O 6 HOH A 40 340 19 HOH HOH . O 6 HOH A 41 341 14 HOH HOH . O 6 HOH A 42 342 230 HOH HOH . O 6 HOH A 43 343 153 HOH HOH . O 6 HOH A 44 344 5 HOH HOH . O 6 HOH A 45 345 6 HOH HOH . O 6 HOH A 46 346 224 HOH HOH . O 6 HOH A 47 347 27 HOH HOH . O 6 HOH A 48 348 223 HOH HOH . O 6 HOH A 49 349 98 HOH HOH . O 6 HOH A 50 350 3 HOH HOH . O 6 HOH A 51 351 156 HOH HOH . O 6 HOH A 52 352 229 HOH HOH . O 6 HOH A 53 353 79 HOH HOH . O 6 HOH A 54 354 89 HOH HOH . O 6 HOH A 55 355 183 HOH HOH . O 6 HOH A 56 356 180 HOH HOH . O 6 HOH A 57 357 38 HOH HOH . O 6 HOH A 58 358 37 HOH HOH . O 6 HOH A 59 359 119 HOH HOH . O 6 HOH A 60 360 173 HOH HOH . O 6 HOH A 61 361 167 HOH HOH . O 6 HOH A 62 362 25 HOH HOH . O 6 HOH A 63 363 170 HOH HOH . O 6 HOH A 64 364 1 HOH HOH . O 6 HOH A 65 365 47 HOH HOH . O 6 HOH A 66 366 161 HOH HOH . O 6 HOH A 67 367 217 HOH HOH . O 6 HOH A 68 368 219 HOH HOH . O 6 HOH A 69 369 213 HOH HOH . O 6 HOH A 70 370 208 HOH HOH . O 6 HOH A 71 371 48 HOH HOH . O 6 HOH A 72 372 162 HOH HOH . O 6 HOH A 73 373 191 HOH HOH . O 6 HOH A 74 374 116 HOH HOH . O 6 HOH A 75 375 146 HOH HOH . O 6 HOH A 76 376 144 HOH HOH . O 6 HOH A 77 377 205 HOH HOH . O 6 HOH A 78 378 182 HOH HOH . O 6 HOH A 79 379 17 HOH HOH . O 6 HOH A 80 380 231 HOH HOH . O 6 HOH A 81 381 152 HOH HOH . O 6 HOH A 82 382 227 HOH HOH . O 6 HOH A 83 383 190 HOH HOH . O 6 HOH A 84 384 233 HOH HOH . O 6 HOH A 85 385 216 HOH HOH . O 6 HOH A 86 386 226 HOH HOH . O 6 HOH A 87 387 225 HOH HOH . O 6 HOH A 88 388 215 HOH HOH . O 6 HOH A 89 389 228 HOH HOH . O 6 HOH A 90 390 169 HOH HOH . O 6 HOH A 91 391 236 HOH HOH . O 6 HOH A 92 392 159 HOH HOH . O 6 HOH A 93 393 235 HOH HOH . O 6 HOH A 94 394 201 HOH HOH . O 6 HOH A 95 395 163 HOH HOH . O 6 HOH A 96 396 210 HOH HOH . O 6 HOH A 97 397 232 HOH HOH . O 6 HOH A 98 398 109 HOH HOH . O 6 HOH A 99 399 178 HOH HOH . O 6 HOH A 100 400 212 HOH HOH . O 6 HOH A 101 401 141 HOH HOH . O 6 HOH A 102 402 221 HOH HOH . O 6 HOH A 103 403 220 HOH HOH . O 6 HOH A 104 404 192 HOH HOH . O 6 HOH A 105 405 234 HOH HOH . O 6 HOH A 106 406 154 HOH HOH . O 6 HOH A 107 407 176 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PT _atom_site.label_atom_id PT _atom_site.label_comp_id PT _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 5 _atom_site.Cartn_x -9.841 _atom_site.Cartn_y -9.183 _atom_site.Cartn_z -14.12 _atom_site.occupancy 0.45 _atom_site.B_iso_or_equiv 46.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PT _atom_site.auth_comp_id PT _atom_site.auth_seq_id 212 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #