data_5OLG
#
_model_server_result.job_id            '_nxN9Chk6ZOSBbgtY1HzSw' 
_model_server_result.datetime_utc      '2024-11-16 20:22:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5olg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":1229}' 
#
_entry.id    5OLG 
#
_exptl.entry_id    5OLG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OLG 
_cell.length_a            39.45 
_cell.length_b            179.393 
_cell.length_c            139.6 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OLG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 BA N N 
? 6 CA N N 
? 6 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 FA NA NA . A NA 1231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc2 A OG SER 101 A SER 91 1_555 FA NA NA . A NA 1231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc3 FA NA NA . A NA 1231 1_555 GA O HOH . A HOH 1349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? 
metalc ? metalc4 FA NA NA . A NA 1231 1_555 GA O HOH . A HOH 1375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 387 n n 
C10 C9 OLC doub 388 n n 
C10 C11 OLC sing 389 n n 
C9 C8 OLC sing 390 n n 
C17 C16 OLC sing 391 z n 
C11 C12 OLC sing 392 n n 
C8 C7 OLC sing 393 n n 
C24 C22 OLC sing 394 n n 
C24 O25 OLC sing 395 n n 
C16 C15 OLC sing 396 n n 
C12 C13 OLC sing 397 n n 
C7 C6 OLC sing 398 n n 
C15 C14 OLC sing 399 n n 
C13 C14 OLC sing 400 n n 
C6 C5 OLC sing 401 n n 
C5 C4 OLC sing 402 n n 
C4 C3 OLC sing 403 n n 
C3 C2 OLC sing 404 n n 
C2 C1 OLC sing 405 n n 
C21 C22 OLC sing 406 n n 
C21 O20 OLC sing 407 n n 
C1 O19 OLC doub 408 n n 
C1 O20 OLC sing 409 n n 
C22 O23 OLC sing 410 n n 
C18 H18 OLC sing 411 n n 
C18 H18A OLC sing 412 n n 
C18 H18B OLC sing 413 n n 
C10 H10 OLC sing 414 n n 
C9 H9 OLC sing 415 n n 
C17 H17 OLC sing 416 n n 
C17 H17A OLC sing 417 n n 
C11 H11 OLC sing 418 n n 
C11 H11A OLC sing 419 n n 
C8 H8 OLC sing 420 n n 
C8 H8A OLC sing 421 n n 
C24 H24 OLC sing 422 n n 
C24 H24A OLC sing 423 n n 
C16 H16 OLC sing 424 n n 
C16 H16A OLC sing 425 n n 
C12 H12 OLC sing 426 n n 
C12 H12A OLC sing 427 n n 
C7 H7 OLC sing 428 n n 
C7 H7A OLC sing 429 n n 
C15 H15 OLC sing 430 n n 
C15 H15A OLC sing 431 n n 
C13 H13 OLC sing 432 n n 
C13 H13A OLC sing 433 n n 
C6 H6 OLC sing 434 n n 
C6 H6A OLC sing 435 n n 
C14 H14 OLC sing 436 n n 
C14 H14A OLC sing 437 n n 
C5 H5 OLC sing 438 n n 
C5 H5A OLC sing 439 n n 
C4 H4 OLC sing 440 n n 
C4 H4A OLC sing 441 n n 
C3 H3 OLC sing 442 n n 
C3 H3A OLC sing 443 n n 
C2 H2 OLC sing 444 n n 
C2 H2A OLC sing 445 n n 
C21 H21 OLC sing 446 n n 
C21 H21A OLC sing 447 n n 
C22 H22 OLC sing 448 n n 
O25 HO25 OLC sing 449 n n 
O23 HO23 OLC sing 450 n n 
#
_atom_sites.entry_id                     5OLG 
_atom_sites.fract_transf_matrix[1][1]    0.025349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007163 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZMA A 1 1201 401 ZMA ZMA . 
C 3 CLR A 1 1202 402 CLR CLR . 
D 3 CLR A 1 1203 403 CLR CLR . 
E 3 CLR A 1 1204 404 CLR CLR . 
F 3 CLR A 1 1205 405 CLR CLR . 
G 4 OLA A 1 1206 406 OLA OLA . 
H 4 OLA A 1 1207 407 OLA OLA . 
I 4 OLA A 1 1208 408 OLA OLA . 
J 4 OLA A 1 1209 409 OLA OLA . 
K 4 OLA A 1 1210 410 OLA OLA . 
L 4 OLA A 1 1211 411 OLA OLA . 
M 4 OLA A 1 1212 412 OLA OLA . 
N 4 OLA A 1 1213 413 OLA OLA . 
O 4 OLA A 1 1214 414 OLA OLA . 
P 4 OLA A 1 1215 415 OLA OLA . 
Q 4 OLA A 1 1216 416 OLA OLA . 
R 4 OLA A 1 1217 417 OLA OLA . 
S 4 OLA A 1 1218 418 OLA OLA . 
T 4 OLA A 1 1219 419 OLA OLA . 
U 4 OLA A 1 1220 420 OLA OLA . 
V 4 OLA A 1 1221 421 OLA OLA . 
W 4 OLA A 1 1222 422 OLA OLA . 
X 5 SCN A 1 1223 423 SCN SCN . 
Y 5 SCN A 1 1224 424 SCN SCN . 
Z 5 SCN A 1 1225 425 SCN SCN . 
AA 5 SCN A 1 1226 426 SCN SCN . 
BA 6 OLC A 1 1227 427 OLC OLC . 
CA 6 OLC A 1 1228 428 OLC OLC . 
DA 6 OLC A 1 1229 429 OLC OLC . 
EA 7 CIT A 1 1230 430 CIT CIT . 
FA 8 NA A 1 1231 431 NA NA . 
GA 9 HOH A 1 1301 501 HOH HOH . 
GA 9 HOH A 2 1302 1301 HOH HOH . 
GA 9 HOH A 3 1303 1302 HOH HOH . 
GA 9 HOH A 4 1304 502 HOH HOH . 
GA 9 HOH A 5 1305 503 HOH HOH . 
GA 9 HOH A 6 1306 504 HOH HOH . 
GA 9 HOH A 7 1307 505 HOH HOH . 
GA 9 HOH A 8 1308 506 HOH HOH . 
GA 9 HOH A 9 1309 507 HOH HOH . 
GA 9 HOH A 10 1310 1303 HOH HOH . 
GA 9 HOH A 11 1311 1304 HOH HOH . 
GA 9 HOH A 12 1312 508 HOH HOH . 
GA 9 HOH A 13 1313 509 HOH HOH . 
GA 9 HOH A 14 1314 510 HOH HOH . 
GA 9 HOH A 15 1315 511 HOH HOH . 
GA 9 HOH A 16 1316 512 HOH HOH . 
GA 9 HOH A 17 1317 1305 HOH HOH . 
GA 9 HOH A 18 1318 513 HOH HOH . 
GA 9 HOH A 19 1319 514 HOH HOH . 
GA 9 HOH A 20 1320 515 HOH HOH . 
GA 9 HOH A 21 1321 516 HOH HOH . 
GA 9 HOH A 22 1322 517 HOH HOH . 
GA 9 HOH A 23 1323 1306 HOH HOH . 
GA 9 HOH A 24 1324 518 HOH HOH . 
GA 9 HOH A 25 1325 1307 HOH HOH . 
GA 9 HOH A 26 1326 519 HOH HOH . 
GA 9 HOH A 27 1327 520 HOH HOH . 
GA 9 HOH A 28 1328 521 HOH HOH . 
GA 9 HOH A 29 1329 522 HOH HOH . 
GA 9 HOH A 30 1330 1308 HOH HOH . 
GA 9 HOH A 31 1331 523 HOH HOH . 
GA 9 HOH A 32 1332 524 HOH HOH . 
GA 9 HOH A 33 1333 525 HOH HOH . 
GA 9 HOH A 34 1334 526 HOH HOH . 
GA 9 HOH A 35 1335 527 HOH HOH . 
GA 9 HOH A 36 1336 528 HOH HOH . 
GA 9 HOH A 37 1337 529 HOH HOH . 
GA 9 HOH A 38 1338 530 HOH HOH . 
GA 9 HOH A 39 1339 1309 HOH HOH . 
GA 9 HOH A 40 1340 531 HOH HOH . 
GA 9 HOH A 41 1341 532 HOH HOH . 
GA 9 HOH A 42 1342 533 HOH HOH . 
GA 9 HOH A 43 1343 534 HOH HOH . 
GA 9 HOH A 44 1344 1310 HOH HOH . 
GA 9 HOH A 45 1345 535 HOH HOH . 
GA 9 HOH A 46 1346 536 HOH HOH . 
GA 9 HOH A 47 1347 537 HOH HOH . 
GA 9 HOH A 48 1348 538 HOH HOH . 
GA 9 HOH A 49 1349 539 HOH HOH . 
GA 9 HOH A 50 1350 540 HOH HOH . 
GA 9 HOH A 51 1351 1311 HOH HOH . 
GA 9 HOH A 52 1352 541 HOH HOH . 
GA 9 HOH A 53 1353 542 HOH HOH . 
GA 9 HOH A 54 1354 543 HOH HOH . 
GA 9 HOH A 55 1355 544 HOH HOH . 
GA 9 HOH A 56 1356 545 HOH HOH . 
GA 9 HOH A 57 1357 546 HOH HOH . 
GA 9 HOH A 58 1358 547 HOH HOH . 
GA 9 HOH A 59 1359 1312 HOH HOH . 
GA 9 HOH A 60 1360 548 HOH HOH . 
GA 9 HOH A 61 1361 549 HOH HOH . 
GA 9 HOH A 62 1362 550 HOH HOH . 
GA 9 HOH A 63 1363 551 HOH HOH . 
GA 9 HOH A 64 1364 552 HOH HOH . 
GA 9 HOH A 65 1365 553 HOH HOH . 
GA 9 HOH A 66 1366 554 HOH HOH . 
GA 9 HOH A 67 1367 555 HOH HOH . 
GA 9 HOH A 68 1368 556 HOH HOH . 
GA 9 HOH A 69 1369 557 HOH HOH . 
GA 9 HOH A 70 1370 558 HOH HOH . 
GA 9 HOH A 71 1371 559 HOH HOH . 
GA 9 HOH A 72 1372 560 HOH HOH . 
GA 9 HOH A 73 1373 561 HOH HOH . 
GA 9 HOH A 74 1374 562 HOH HOH . 
GA 9 HOH A 75 1375 563 HOH HOH . 
GA 9 HOH A 76 1376 564 HOH HOH . 
GA 9 HOH A 77 1377 565 HOH HOH . 
GA 9 HOH A 78 1378 566 HOH HOH . 
GA 9 HOH A 79 1379 567 HOH HOH . 
GA 9 HOH A 80 1380 1313 HOH HOH . 
GA 9 HOH A 81 1381 568 HOH HOH . 
GA 9 HOH A 82 1382 569 HOH HOH . 
GA 9 HOH A 83 1383 570 HOH HOH . 
GA 9 HOH A 84 1384 1314 HOH HOH . 
GA 9 HOH A 85 1385 571 HOH HOH . 
GA 9 HOH A 86 1386 1315 HOH HOH . 
GA 9 HOH A 87 1387 1316 HOH HOH . 
GA 9 HOH A 88 1388 1317 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 OLC . . . DA 6 -22.232 -8.579 3.416 0.46 47.5 ? C18 OLC 1229 A 1 
HETATM 2 C C10 OLC . . . DA 6 -23.637 -0.702 0.22 0.46 51.49 ? C10 OLC 1229 A 1 
HETATM 3 C C9 OLC . . . DA 6 -23.754 0.624 0.064 0.46 51.48 ? C9 OLC 1229 A 1 
HETATM 4 C C17 OLC . . . DA 6 -21.761 -7.539 2.427 0.46 46.57 ? C17 OLC 1229 A 1 
HETATM 5 C C11 OLC . . . DA 6 -23.755 -1.373 1.58 0.46 49.92 ? C11 OLC 1229 A 1 
HETATM 6 C C8 OLC . . . DA 6 -23.635 1.287 -1.301 0.46 50.16 ? C8 OLC 1229 A 1 
HETATM 7 C C24 OLC . . . DA 6 -21.679 12.596 0.314 0.46 49.03 ? C24 OLC 1229 A 1 
HETATM 8 C C16 OLC . . . DA 6 -21.916 -6.133 2.99 0.46 45.38 ? C16 OLC 1229 A 1 
HETATM 9 C C12 OLC . . . DA 6 -24.944 -2.336 1.592 0.46 48.27 ? C12 OLC 1229 A 1 
HETATM 10 C C7 OLC . . . DA 6 -24.818 2.215 -1.581 0.46 48.38 ? C7 OLC 1229 A 1 
HETATM 11 C C15 OLC . . . DA 6 -23.35 -5.608 2.932 0.46 44.69 ? C15 OLC 1229 A 1 
HETATM 12 C C13 OLC . . . DA 6 -24.741 -3.539 2.515 0.46 46.58 ? C13 OLC 1229 A 1 
HETATM 13 C C6 OLC . . . DA 6 -24.46 3.304 -2.595 0.46 46.84 ? C6 OLC 1229 A 1 
HETATM 14 C C14 OLC . . . DA 6 -23.384 -4.209 2.321 0.46 45.3 ? C14 OLC 1229 A 1 
HETATM 15 C C5 OLC . . . DA 6 -23.616 4.424 -1.995 0.46 45.48 ? C5 OLC 1229 A 1 
HETATM 16 C C4 OLC . . . DA 6 -23.099 5.394 -3.057 0.46 44.89 ? C4 OLC 1229 A 1 
HETATM 17 C C3 OLC . . . DA 6 -22.63 6.713 -2.439 0.46 45.86 ? C3 OLC 1229 A 1 
HETATM 18 C C2 OLC . . . DA 6 -21.54 7.426 -3.236 0.46 45.82 ? C2 OLC 1229 A 1 
HETATM 19 C C21 OLC . . . DA 6 -21.645 10.794 -1.369 0.46 47.07 ? C21 OLC 1229 A 1 
HETATM 20 C C1 OLC . . . DA 6 -21.549 8.913 -2.92 0.46 48.05 ? C1 OLC 1229 A 1 
HETATM 21 C C22 OLC . . . DA 6 -20.921 11.374 -0.169 0.46 48.03 ? C22 OLC 1229 A 1 
HETATM 22 O O19 OLC . . . DA 6 -21.863 9.73 -3.767 0.46 48.5 ? O19 OLC 1229 A 1 
HETATM 23 O O25 OLC . . . DA 6 -20.945 13.223 1.369 0.46 53.73 ? O25 OLC 1229 A 1 
HETATM 24 O O23 OLC . . . DA 6 -20.889 10.398 0.872 0.46 51.63 ? O23 OLC 1229 A 1 
HETATM 25 O O20 OLC . . . DA 6 -21.205 9.46 -1.616 0.46 48.91 ? O20 OLC 1229 A 1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           441 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           25 
#