data_5OLH # _model_server_result.job_id ibIMEd-mOSGGISRkGfRK5w _model_server_result.datetime_utc '2025-01-30 22:47:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5olh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 5OLH # _exptl.entry_id 5OLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OLH _cell.length_a 39.4 _cell.length_b 179.334 _cell.length_c 141.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 D NA NA . A NA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 A OG SER 101 A SER 91 1_555 D NA NA . A NA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc3 D NA NA . A NA 1203 1_555 DA O HOH . A HOH 1309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OLH _atom_sites.fract_transf_matrix[1][1] 0.025381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9XT A 1 1201 400 9XT 9XT . C 3 OLA A 1 1202 402 OLA OLA . D 4 NA A 1 1203 403 NA NA . E 5 CLR A 1 1204 404 CLR CLR . F 5 CLR A 1 1205 405 CLR CLR . G 5 CLR A 1 1206 406 CLR CLR . H 3 OLA A 1 1207 407 OLA OLA . I 3 OLA A 1 1208 408 OLA OLA . J 3 OLA A 1 1209 409 OLA OLA . K 3 OLA A 1 1210 410 OLA OLA . L 3 OLA A 1 1211 411 OLA OLA . M 3 OLA A 1 1212 412 OLA OLA . N 3 OLA A 1 1213 413 OLA OLA . O 3 OLA A 1 1214 414 OLA OLA . P 3 OLA A 1 1215 415 OLA OLA . Q 3 OLA A 1 1216 416 OLA OLA . R 3 OLA A 1 1217 417 OLA OLA . S 3 OLA A 1 1218 418 OLA OLA . T 3 OLA A 1 1219 419 OLA OLA . U 6 OLC A 1 1220 420 OLC OLC . V 6 OLC A 1 1221 421 OLC OLC . W 6 OLC A 1 1222 422 OLC OLC . X 6 OLC A 1 1223 423 OLC OLC . Y 6 OLC A 1 1224 424 OLC OLC . Z 6 OLC A 1 1225 425 OLC OLC . AA 6 OLC A 1 1226 426 OLC OLC . BA 6 OLC A 1 1227 427 OLC OLC . CA 3 OLA A 1 1228 428 OLA OLA . DA 7 HOH A 1 1301 501 HOH HOH . DA 7 HOH A 2 1302 502 HOH HOH . DA 7 HOH A 3 1303 503 HOH HOH . DA 7 HOH A 4 1304 504 HOH HOH . DA 7 HOH A 5 1305 505 HOH HOH . DA 7 HOH A 6 1306 506 HOH HOH . DA 7 HOH A 7 1307 507 HOH HOH . DA 7 HOH A 8 1308 508 HOH HOH . DA 7 HOH A 9 1309 509 HOH HOH . DA 7 HOH A 10 1310 510 HOH HOH . DA 7 HOH A 11 1311 511 HOH HOH . DA 7 HOH A 12 1312 512 HOH HOH . DA 7 HOH A 13 1313 513 HOH HOH . DA 7 HOH A 14 1314 514 HOH HOH . DA 7 HOH A 15 1315 515 HOH HOH . DA 7 HOH A 16 1316 516 HOH HOH . DA 7 HOH A 17 1317 517 HOH HOH . DA 7 HOH A 18 1318 518 HOH HOH . DA 7 HOH A 19 1319 519 HOH HOH . DA 7 HOH A 20 1320 520 HOH HOH . DA 7 HOH A 21 1321 521 HOH HOH . DA 7 HOH A 22 1322 522 HOH HOH . DA 7 HOH A 23 1323 523 HOH HOH . DA 7 HOH A 24 1324 524 HOH HOH . DA 7 HOH A 25 1325 525 HOH HOH . DA 7 HOH A 26 1326 526 HOH HOH . DA 7 HOH A 27 1327 527 HOH HOH . DA 7 HOH A 28 1328 528 HOH HOH . DA 7 HOH A 29 1329 529 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -23.925 _atom_site.Cartn_y -7.938 _atom_site.Cartn_z 16.753 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #