data_5OLH # _model_server_result.job_id 5k8z-liXLhJHqSED8F2nWQ _model_server_result.datetime_utc '2024-11-24 02:10:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5olh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1206}' # _entry.id 5OLH # _exptl.entry_id 5OLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OLH _cell.length_a 39.4 _cell.length_b 179.334 _cell.length_c 141.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 D NA NA . A NA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 A OG SER 101 A SER 91 1_555 D NA NA . A NA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc3 D NA NA . A NA 1203 1_555 DA O HOH . A HOH 1309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 112 n n C1 C10 CLR sing 113 n n C1 H11 CLR sing 114 n n C1 H12 CLR sing 115 n n C2 C3 CLR sing 116 n n C2 H21 CLR sing 117 n n C2 H22 CLR sing 118 n n C3 C4 CLR sing 119 n n C3 O1 CLR sing 120 n n C3 H3 CLR sing 121 n n C4 C5 CLR sing 122 n n C4 H41 CLR sing 123 n n C4 H42 CLR sing 124 n n C5 C6 CLR doub 125 n n C5 C10 CLR sing 126 n n C6 C7 CLR sing 127 n n C6 H6 CLR sing 128 n n C7 C8 CLR sing 129 n n C7 H71 CLR sing 130 n n C7 H72 CLR sing 131 n n C8 C9 CLR sing 132 n n C8 C14 CLR sing 133 n n C8 H8 CLR sing 134 n n C9 C10 CLR sing 135 n n C9 C11 CLR sing 136 n n C9 H9 CLR sing 137 n n C10 C19 CLR sing 138 n n C11 C12 CLR sing 139 n n C11 H111 CLR sing 140 n n C11 H112 CLR sing 141 n n C12 C13 CLR sing 142 n n C12 H121 CLR sing 143 n n C12 H122 CLR sing 144 n n C13 C14 CLR sing 145 n n C13 C17 CLR sing 146 n n C13 C18 CLR sing 147 n n C14 C15 CLR sing 148 n n C14 H14 CLR sing 149 n n C15 C16 CLR sing 150 n n C15 H151 CLR sing 151 n n C15 H152 CLR sing 152 n n C16 C17 CLR sing 153 n n C16 H161 CLR sing 154 n n C16 H162 CLR sing 155 n n C17 C20 CLR sing 156 n n C17 H17 CLR sing 157 n n C18 H181 CLR sing 158 n n C18 H182 CLR sing 159 n n C18 H183 CLR sing 160 n n C19 H191 CLR sing 161 n n C19 H192 CLR sing 162 n n C19 H193 CLR sing 163 n n C20 C21 CLR sing 164 n n C20 C22 CLR sing 165 n n C20 H20 CLR sing 166 n n C21 H211 CLR sing 167 n n C21 H212 CLR sing 168 n n C21 H213 CLR sing 169 n n C22 C23 CLR sing 170 n n C22 H221 CLR sing 171 n n C22 H222 CLR sing 172 n n C23 C24 CLR sing 173 n n C23 H231 CLR sing 174 n n C23 H232 CLR sing 175 n n C24 C25 CLR sing 176 n n C24 H241 CLR sing 177 n n C24 H242 CLR sing 178 n n C25 C26 CLR sing 179 n n C25 C27 CLR sing 180 n n C25 H25 CLR sing 181 n n C26 H261 CLR sing 182 n n C26 H262 CLR sing 183 n n C26 H263 CLR sing 184 n n C27 H271 CLR sing 185 n n C27 H272 CLR sing 186 n n C27 H273 CLR sing 187 n n O1 H1 CLR sing 188 n n # _atom_sites.entry_id 5OLH _atom_sites.fract_transf_matrix[1][1] 0.025381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9XT A 1 1201 400 9XT 9XT . C 3 OLA A 1 1202 402 OLA OLA . D 4 NA A 1 1203 403 NA NA . E 5 CLR A 1 1204 404 CLR CLR . F 5 CLR A 1 1205 405 CLR CLR . G 5 CLR A 1 1206 406 CLR CLR . H 3 OLA A 1 1207 407 OLA OLA . I 3 OLA A 1 1208 408 OLA OLA . J 3 OLA A 1 1209 409 OLA OLA . K 3 OLA A 1 1210 410 OLA OLA . L 3 OLA A 1 1211 411 OLA OLA . M 3 OLA A 1 1212 412 OLA OLA . N 3 OLA A 1 1213 413 OLA OLA . O 3 OLA A 1 1214 414 OLA OLA . P 3 OLA A 1 1215 415 OLA OLA . Q 3 OLA A 1 1216 416 OLA OLA . R 3 OLA A 1 1217 417 OLA OLA . S 3 OLA A 1 1218 418 OLA OLA . T 3 OLA A 1 1219 419 OLA OLA . U 6 OLC A 1 1220 420 OLC OLC . V 6 OLC A 1 1221 421 OLC OLC . W 6 OLC A 1 1222 422 OLC OLC . X 6 OLC A 1 1223 423 OLC OLC . Y 6 OLC A 1 1224 424 OLC OLC . Z 6 OLC A 1 1225 425 OLC OLC . AA 6 OLC A 1 1226 426 OLC OLC . BA 6 OLC A 1 1227 427 OLC OLC . CA 3 OLA A 1 1228 428 OLA OLA . DA 7 HOH A 1 1301 501 HOH HOH . DA 7 HOH A 2 1302 502 HOH HOH . DA 7 HOH A 3 1303 503 HOH HOH . DA 7 HOH A 4 1304 504 HOH HOH . DA 7 HOH A 5 1305 505 HOH HOH . DA 7 HOH A 6 1306 506 HOH HOH . DA 7 HOH A 7 1307 507 HOH HOH . DA 7 HOH A 8 1308 508 HOH HOH . DA 7 HOH A 9 1309 509 HOH HOH . DA 7 HOH A 10 1310 510 HOH HOH . DA 7 HOH A 11 1311 511 HOH HOH . DA 7 HOH A 12 1312 512 HOH HOH . DA 7 HOH A 13 1313 513 HOH HOH . DA 7 HOH A 14 1314 514 HOH HOH . DA 7 HOH A 15 1315 515 HOH HOH . DA 7 HOH A 16 1316 516 HOH HOH . DA 7 HOH A 17 1317 517 HOH HOH . DA 7 HOH A 18 1318 518 HOH HOH . DA 7 HOH A 19 1319 519 HOH HOH . DA 7 HOH A 20 1320 520 HOH HOH . DA 7 HOH A 21 1321 521 HOH HOH . DA 7 HOH A 22 1322 522 HOH HOH . DA 7 HOH A 23 1323 523 HOH HOH . DA 7 HOH A 24 1324 524 HOH HOH . DA 7 HOH A 25 1325 525 HOH HOH . DA 7 HOH A 26 1326 526 HOH HOH . DA 7 HOH A 27 1327 527 HOH HOH . DA 7 HOH A 28 1328 528 HOH HOH . DA 7 HOH A 29 1329 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 5 -3.051 8.526 21.464 1 31.89 ? C1 CLR 1206 A 1 HETATM 2 C C2 CLR . . . G 5 -2.873 10.035 21.36 1 31.39 ? C2 CLR 1206 A 1 HETATM 3 C C3 CLR . . . G 5 -1.831 10.384 20.309 1 30.91 ? C3 CLR 1206 A 1 HETATM 4 C C4 CLR . . . G 5 -2.313 9.89 18.949 1 26.8 ? C4 CLR 1206 A 1 HETATM 5 C C5 CLR . . . G 5 -2.631 8.416 19.03 1 26.57 ? C5 CLR 1206 A 1 HETATM 6 C C6 CLR . . . G 5 -2.12 7.607 18.084 1 25.68 ? C6 CLR 1206 A 1 HETATM 7 C C7 CLR . . . G 5 -2.255 6.103 18.095 1 23.82 ? C7 CLR 1206 A 1 HETATM 8 C C8 CLR . . . G 5 -3.456 5.678 18.925 1 28.17 ? C8 CLR 1206 A 1 HETATM 9 C C9 CLR . . . G 5 -3.437 6.389 20.277 1 27.24 ? C9 CLR 1206 A 1 HETATM 10 C C10 CLR . . . G 5 -3.517 7.911 20.151 1 25.06 ? C10 CLR 1206 A 1 HETATM 11 C C11 CLR . . . G 5 -4.517 5.851 21.218 1 26.28 ? C11 CLR 1206 A 1 HETATM 12 C C12 CLR . . . G 5 -4.495 4.324 21.348 1 32.81 ? C12 CLR 1206 A 1 HETATM 13 C C13 CLR . . . G 5 -4.592 3.676 19.972 1 41.2 ? C13 CLR 1206 A 1 HETATM 14 C C14 CLR . . . G 5 -3.416 4.174 19.157 1 33.98 ? C14 CLR 1206 A 1 HETATM 15 C C15 CLR . . . G 5 -3.396 3.268 17.933 1 32.26 ? C15 CLR 1206 A 1 HETATM 16 C C16 CLR . . . G 5 -3.852 1.915 18.485 1 32.73 ? C16 CLR 1206 A 1 HETATM 17 C C17 CLR . . . G 5 -4.407 2.163 19.891 1 36.97 ? C17 CLR 1206 A 1 HETATM 18 C C18 CLR . . . G 5 -5.909 4.046 19.287 1 35.51 ? C18 CLR 1206 A 1 HETATM 19 C C19 CLR . . . G 5 -4.951 8.354 19.879 1 20.36 ? C19 CLR 1206 A 1 HETATM 20 C C20 CLR . . . G 5 -5.644 1.306 20.161 1 34.57 ? C20 CLR 1206 A 1 HETATM 21 C C21 CLR . . . G 5 -5.995 1.225 21.644 1 29.43 ? C21 CLR 1206 A 1 HETATM 22 C C22 CLR . . . G 5 -5.435 -0.097 19.603 1 40.89 ? C22 CLR 1206 A 1 HETATM 23 C C23 CLR . . . G 5 -6.553 -1.037 20.038 1 43.13 ? C23 CLR 1206 A 1 HETATM 24 C C24 CLR . . . G 5 -5.989 -2.332 20.613 1 48.78 ? C24 CLR 1206 A 1 HETATM 25 C C25 CLR . . . G 5 -5.303 -3.171 19.54 1 50.64 ? C25 CLR 1206 A 1 HETATM 26 C C26 CLR . . . G 5 -4.527 -4.321 20.169 1 52.7 ? C26 CLR 1206 A 1 HETATM 27 C C27 CLR . . . G 5 -6.312 -3.695 18.527 1 49.58 ? C27 CLR 1206 A 1 HETATM 28 O O1 CLR . . . G 5 -1.663 11.803 20.282 1 34.15 ? O1 CLR 1206 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #