data_5OLH # _model_server_result.job_id VeSbCQ2_6sw-Qk7DH6TMnA _model_server_result.datetime_utc '2024-11-21 17:00:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5olh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1221}' # _entry.id 5OLH # _exptl.entry_id 5OLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OLH _cell.length_a 39.4 _cell.length_b 179.334 _cell.length_c 141.145 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N ? 6 AA N N ? 6 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 D NA NA . A NA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc2 A OG SER 101 A SER 91 1_555 D NA NA . A NA 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc3 D NA NA . A NA 1203 1_555 DA O HOH . A HOH 1309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.946 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 409 n n C10 C9 OLC doub 410 n n C10 C11 OLC sing 411 n n C9 C8 OLC sing 412 n n C17 C16 OLC sing 413 z n C11 C12 OLC sing 414 n n C8 C7 OLC sing 415 n n C24 C22 OLC sing 416 n n C24 O25 OLC sing 417 n n C16 C15 OLC sing 418 n n C12 C13 OLC sing 419 n n C7 C6 OLC sing 420 n n C15 C14 OLC sing 421 n n C13 C14 OLC sing 422 n n C6 C5 OLC sing 423 n n C5 C4 OLC sing 424 n n C4 C3 OLC sing 425 n n C3 C2 OLC sing 426 n n C2 C1 OLC sing 427 n n C21 C22 OLC sing 428 n n C21 O20 OLC sing 429 n n C1 O19 OLC doub 430 n n C1 O20 OLC sing 431 n n C22 O23 OLC sing 432 n n C18 H18 OLC sing 433 n n C18 H18A OLC sing 434 n n C18 H18B OLC sing 435 n n C10 H10 OLC sing 436 n n C9 H9 OLC sing 437 n n C17 H17 OLC sing 438 n n C17 H17A OLC sing 439 n n C11 H11 OLC sing 440 n n C11 H11A OLC sing 441 n n C8 H8 OLC sing 442 n n C8 H8A OLC sing 443 n n C24 H24 OLC sing 444 n n C24 H24A OLC sing 445 n n C16 H16 OLC sing 446 n n C16 H16A OLC sing 447 n n C12 H12 OLC sing 448 n n C12 H12A OLC sing 449 n n C7 H7 OLC sing 450 n n C7 H7A OLC sing 451 n n C15 H15 OLC sing 452 n n C15 H15A OLC sing 453 n n C13 H13 OLC sing 454 n n C13 H13A OLC sing 455 n n C6 H6 OLC sing 456 n n C6 H6A OLC sing 457 n n C14 H14 OLC sing 458 n n C14 H14A OLC sing 459 n n C5 H5 OLC sing 460 n n C5 H5A OLC sing 461 n n C4 H4 OLC sing 462 n n C4 H4A OLC sing 463 n n C3 H3 OLC sing 464 n n C3 H3A OLC sing 465 n n C2 H2 OLC sing 466 n n C2 H2A OLC sing 467 n n C21 H21 OLC sing 468 n n C21 H21A OLC sing 469 n n C22 H22 OLC sing 470 n n O25 HO25 OLC sing 471 n n O23 HO23 OLC sing 472 n n # _atom_sites.entry_id 5OLH _atom_sites.fract_transf_matrix[1][1] 0.025381 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9XT A 1 1201 400 9XT 9XT . C 3 OLA A 1 1202 402 OLA OLA . D 4 NA A 1 1203 403 NA NA . E 5 CLR A 1 1204 404 CLR CLR . F 5 CLR A 1 1205 405 CLR CLR . G 5 CLR A 1 1206 406 CLR CLR . H 3 OLA A 1 1207 407 OLA OLA . I 3 OLA A 1 1208 408 OLA OLA . J 3 OLA A 1 1209 409 OLA OLA . K 3 OLA A 1 1210 410 OLA OLA . L 3 OLA A 1 1211 411 OLA OLA . M 3 OLA A 1 1212 412 OLA OLA . N 3 OLA A 1 1213 413 OLA OLA . O 3 OLA A 1 1214 414 OLA OLA . P 3 OLA A 1 1215 415 OLA OLA . Q 3 OLA A 1 1216 416 OLA OLA . R 3 OLA A 1 1217 417 OLA OLA . S 3 OLA A 1 1218 418 OLA OLA . T 3 OLA A 1 1219 419 OLA OLA . U 6 OLC A 1 1220 420 OLC OLC . V 6 OLC A 1 1221 421 OLC OLC . W 6 OLC A 1 1222 422 OLC OLC . X 6 OLC A 1 1223 423 OLC OLC . Y 6 OLC A 1 1224 424 OLC OLC . Z 6 OLC A 1 1225 425 OLC OLC . AA 6 OLC A 1 1226 426 OLC OLC . BA 6 OLC A 1 1227 427 OLC OLC . CA 3 OLA A 1 1228 428 OLA OLA . DA 7 HOH A 1 1301 501 HOH HOH . DA 7 HOH A 2 1302 502 HOH HOH . DA 7 HOH A 3 1303 503 HOH HOH . DA 7 HOH A 4 1304 504 HOH HOH . DA 7 HOH A 5 1305 505 HOH HOH . DA 7 HOH A 6 1306 506 HOH HOH . DA 7 HOH A 7 1307 507 HOH HOH . DA 7 HOH A 8 1308 508 HOH HOH . DA 7 HOH A 9 1309 509 HOH HOH . DA 7 HOH A 10 1310 510 HOH HOH . DA 7 HOH A 11 1311 511 HOH HOH . DA 7 HOH A 12 1312 512 HOH HOH . DA 7 HOH A 13 1313 513 HOH HOH . DA 7 HOH A 14 1314 514 HOH HOH . DA 7 HOH A 15 1315 515 HOH HOH . DA 7 HOH A 16 1316 516 HOH HOH . DA 7 HOH A 17 1317 517 HOH HOH . DA 7 HOH A 18 1318 518 HOH HOH . DA 7 HOH A 19 1319 519 HOH HOH . DA 7 HOH A 20 1320 520 HOH HOH . DA 7 HOH A 21 1321 521 HOH HOH . DA 7 HOH A 22 1322 522 HOH HOH . DA 7 HOH A 23 1323 523 HOH HOH . DA 7 HOH A 24 1324 524 HOH HOH . DA 7 HOH A 25 1325 525 HOH HOH . DA 7 HOH A 26 1326 526 HOH HOH . DA 7 HOH A 27 1327 527 HOH HOH . DA 7 HOH A 28 1328 528 HOH HOH . DA 7 HOH A 29 1329 529 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . V 6 -6.535 -3.604 27.555 1 55.07 ? C10 OLC 1221 A 1 HETATM 2 C C9 OLC . . . V 6 -6.368 -2.741 28.552 1 56.65 ? C9 OLC 1221 A 1 HETATM 3 C C8 OLC . . . V 6 -5.164 -1.834 28.554 1 62.82 ? C8 OLC 1221 A 1 HETATM 4 C C24 OLC . . . V 6 -4.333 11.082 29.137 1 68.95 ? C24 OLC 1221 A 1 HETATM 5 C C7 OLC . . . V 6 -5.604 -0.411 28.874 1 67.26 ? C7 OLC 1221 A 1 HETATM 6 C C6 OLC . . . V 6 -4.405 0.519 29.03 1 63.82 ? C6 OLC 1221 A 1 HETATM 7 C C5 OLC . . . V 6 -4.866 1.879 29.533 1 59.44 ? C5 OLC 1221 A 1 HETATM 8 C C4 OLC . . . V 6 -3.729 2.89 29.623 1 59.29 ? C4 OLC 1221 A 1 HETATM 9 C C3 OLC . . . V 6 -4.27 4.196 30.191 1 57.72 ? C3 OLC 1221 A 1 HETATM 10 C C2 OLC . . . V 6 -3.266 5.34 30.123 1 61.3 ? C2 OLC 1221 A 1 HETATM 11 C C21 OLC . . . V 6 -4.154 9.078 30.624 1 67.53 ? C21 OLC 1221 A 1 HETATM 12 C C1 OLC . . . V 6 -4.017 6.619 30.411 1 65.24 ? C1 OLC 1221 A 1 HETATM 13 C C22 OLC . . . V 6 -3.442 10.331 30.125 1 70.74 ? C22 OLC 1221 A 1 HETATM 14 O O19 OLC . . . V 6 -5.214 6.582 30.643 1 70 ? O19 OLC 1221 A 1 HETATM 15 O O25 OLC . . . V 6 -5.618 11.362 29.71 1 67 ? O25 OLC 1221 A 1 HETATM 16 O O23 OLC . . . V 6 -3.133 11.177 31.237 1 78.86 ? O23 OLC 1221 A 1 HETATM 17 O O20 OLC . . . V 6 -3.355 7.914 30.411 1 65.66 ? O20 OLC 1221 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #