data_5OLL # _model_server_result.job_id 9Jn0JFlhCI-6YpnHwB6Q5w _model_server_result.datetime_utc '2024-11-23 21:45:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 5OLL # _exptl.entry_id 5OLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OLL _cell.length_a 53.65 _cell.length_b 53.65 _cell.length_c 38.11 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OLL _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 18 A CYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 10 A CYS 10 1_555 A SG CYS 23 A CYS 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 17 A CYS 17 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A N GLU 1 A GLU 1 1_555 C NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc2 A O GLU 1 A GLU 1 1_555 C NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 A N GLU 1 A GLU 1 1_555 C NI NI . A NI 102 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc4 A O GLU 1 A GLU 1 1_555 C NI NI . A NI 102 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 A OE2 GLU 19 A GLU 19 1_555 B NI NI . A NI 101 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 A OE1 GLU 19 A GLU 19 1_555 B NI NI . A NI 101 2_555 ? A ? ? A ? ? ? ? ? ? ? 2.462 ? metalc ? metalc7 A OE2 GLU 19 A GLU 19 1_555 B NI NI . A NI 101 2_555 ? A ? ? A ? ? ? ? ? ? ? 2.35 ? metalc ? metalc8 A OE1 GLU 22 A GLU 22 1_555 B NI NI . A NI 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.113 ? metalc ? metalc9 A OE2 GLU 22 A GLU 22 1_555 B NI NI . A NI 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 D NI NI . A NI 103 1_555 E O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc11 D NI NI . A NI 103 1_555 E O HOH . A HOH 202 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc12 D NI NI . A NI 103 1_555 E O HOH . A HOH 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc13 D NI NI . A NI 103 1_555 E O HOH . A HOH 237 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OLL _atom_sites.fract_transf_matrix[1][1] 0.018639 _atom_sites.fract_transf_matrix[1][2] 0.010761 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NI A 1 101 1 NI NI . C 2 NI A 1 102 2 NI NI . D 2 NI A 1 103 3 NI NI . E 3 HOH A 1 201 8 HOH HOH . E 3 HOH A 2 202 19 HOH HOH . E 3 HOH A 3 203 7 HOH HOH . E 3 HOH A 4 204 14 HOH HOH . E 3 HOH A 5 205 9 HOH HOH . E 3 HOH A 6 206 2 HOH HOH . E 3 HOH A 7 207 15 HOH HOH . E 3 HOH A 8 208 16 HOH HOH . E 3 HOH A 9 209 1 HOH HOH . E 3 HOH A 10 210 5 HOH HOH . E 3 HOH A 11 211 26 HOH HOH . E 3 HOH A 12 212 37 HOH HOH . E 3 HOH A 13 213 18 HOH HOH . E 3 HOH A 14 214 31 HOH HOH . E 3 HOH A 15 215 4 HOH HOH . E 3 HOH A 16 216 12 HOH HOH . E 3 HOH A 17 217 36 HOH HOH . E 3 HOH A 18 218 32 HOH HOH . E 3 HOH A 19 219 17 HOH HOH . E 3 HOH A 20 220 24 HOH HOH . E 3 HOH A 21 221 34 HOH HOH . E 3 HOH A 22 222 6 HOH HOH . E 3 HOH A 23 223 3 HOH HOH . E 3 HOH A 24 224 28 HOH HOH . E 3 HOH A 25 225 13 HOH HOH . E 3 HOH A 26 226 33 HOH HOH . E 3 HOH A 27 227 29 HOH HOH . E 3 HOH A 28 228 23 HOH HOH . E 3 HOH A 29 229 21 HOH HOH . E 3 HOH A 30 230 25 HOH HOH . E 3 HOH A 31 231 27 HOH HOH . E 3 HOH A 32 232 10 HOH HOH . E 3 HOH A 33 233 35 HOH HOH . E 3 HOH A 34 234 22 HOH HOH . E 3 HOH A 35 235 11 HOH HOH . E 3 HOH A 36 236 30 HOH HOH . E 3 HOH A 37 237 20 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.01 _atom_site.Cartn_y 0.015 _atom_site.Cartn_z 26.811 _atom_site.occupancy 0.23 _atom_site.B_iso_or_equiv 26.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #