data_5OLO # _model_server_result.job_id KaZxC8SMA8NAgdVCemfR0Q _model_server_result.datetime_utc '2024-11-24 02:34:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5olo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 5OLO # _exptl.entry_id 5OLO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OLO _cell.length_a 39.383 _cell.length_b 181.013 _cell.length_c 141.774 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OLO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 X NA NA . A NA 1223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 127 n n C1 C10 CLR sing 128 n n C1 H11 CLR sing 129 n n C1 H12 CLR sing 130 n n C2 C3 CLR sing 131 n n C2 H21 CLR sing 132 n n C2 H22 CLR sing 133 n n C3 C4 CLR sing 134 n n C3 O1 CLR sing 135 n n C3 H3 CLR sing 136 n n C4 C5 CLR sing 137 n n C4 H41 CLR sing 138 n n C4 H42 CLR sing 139 n n C5 C6 CLR doub 140 n n C5 C10 CLR sing 141 n n C6 C7 CLR sing 142 n n C6 H6 CLR sing 143 n n C7 C8 CLR sing 144 n n C7 H71 CLR sing 145 n n C7 H72 CLR sing 146 n n C8 C9 CLR sing 147 n n C8 C14 CLR sing 148 n n C8 H8 CLR sing 149 n n C9 C10 CLR sing 150 n n C9 C11 CLR sing 151 n n C9 H9 CLR sing 152 n n C10 C19 CLR sing 153 n n C11 C12 CLR sing 154 n n C11 H111 CLR sing 155 n n C11 H112 CLR sing 156 n n C12 C13 CLR sing 157 n n C12 H121 CLR sing 158 n n C12 H122 CLR sing 159 n n C13 C14 CLR sing 160 n n C13 C17 CLR sing 161 n n C13 C18 CLR sing 162 n n C14 C15 CLR sing 163 n n C14 H14 CLR sing 164 n n C15 C16 CLR sing 165 n n C15 H151 CLR sing 166 n n C15 H152 CLR sing 167 n n C16 C17 CLR sing 168 n n C16 H161 CLR sing 169 n n C16 H162 CLR sing 170 n n C17 C20 CLR sing 171 n n C17 H17 CLR sing 172 n n C18 H181 CLR sing 173 n n C18 H182 CLR sing 174 n n C18 H183 CLR sing 175 n n C19 H191 CLR sing 176 n n C19 H192 CLR sing 177 n n C19 H193 CLR sing 178 n n C20 C21 CLR sing 179 n n C20 C22 CLR sing 180 n n C20 H20 CLR sing 181 n n C21 H211 CLR sing 182 n n C21 H212 CLR sing 183 n n C21 H213 CLR sing 184 n n C22 C23 CLR sing 185 n n C22 H221 CLR sing 186 n n C22 H222 CLR sing 187 n n C23 C24 CLR sing 188 n n C23 H231 CLR sing 189 n n C23 H232 CLR sing 190 n n C24 C25 CLR sing 191 n n C24 H241 CLR sing 192 n n C24 H242 CLR sing 193 n n C25 C26 CLR sing 194 n n C25 C27 CLR sing 195 n n C25 H25 CLR sing 196 n n C26 H261 CLR sing 197 n n C26 H262 CLR sing 198 n n C26 H263 CLR sing 199 n n C27 H271 CLR sing 200 n n C27 H272 CLR sing 201 n n C27 H273 CLR sing 202 n n O1 H1 CLR sing 203 n n # _atom_sites.entry_id 5OLO _atom_sites.fract_transf_matrix[1][1] 0.025392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9XW A 1 1201 1388 9XW 9XW . C 3 CLR A 1 1202 1389 CLR CLR . D 3 CLR A 1 1203 1390 CLR CLR . E 3 CLR A 1 1204 1391 CLR CLR . F 4 OLA A 1 1205 1392 OLA OLA . G 4 OLA A 1 1206 1393 OLA OLA . H 4 OLA A 1 1207 1394 OLA OLA . I 4 OLA A 1 1208 1395 OLA OLA . J 4 OLA A 1 1209 1396 OLA OLA . K 4 OLA A 1 1210 1397 OLA OLA . L 4 OLA A 1 1211 1398 OLA OLA . M 4 OLA A 1 1212 1399 OLA OLA . N 4 OLA A 1 1213 1400 OLA OLA . O 4 OLA A 1 1214 1401 OLA OLA . P 5 OLC A 1 1215 1402 OLC OLC . Q 5 OLC A 1 1216 1403 OLC OLC . R 5 OLC A 1 1217 1404 OLC OLC . S 5 OLC A 1 1218 1405 OLC OLC . T 5 OLC A 1 1219 1406 OLC OLC . U 5 OLC A 1 1220 1407 OLC OLC . V 5 OLC A 1 1221 1408 OLC OLC . W 5 OLC A 1 1222 1409 OLC OLC . X 6 NA A 1 1223 1410 NA NA . Y 7 HOH A 1 1501 1501 HOH HOH . Y 7 HOH A 2 1502 1502 HOH HOH . Y 7 HOH A 3 1503 1503 HOH HOH . Y 7 HOH A 4 1504 1504 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . E 3 2.844 172.845 21.993 1 69.54 ? C1 CLR 1204 A 1 HETATM 2 C C2 CLR . . . E 3 2.634 171.338 21.902 1 68.38 ? C2 CLR 1204 A 1 HETATM 3 C C3 CLR . . . E 3 1.721 170.951 20.747 1 69.07 ? C3 CLR 1204 A 1 HETATM 4 C C4 CLR . . . E 3 2.327 171.448 19.441 1 74.66 ? C4 CLR 1204 A 1 HETATM 5 C C5 CLR . . . E 3 2.604 172.929 19.551 1 80.74 ? C5 CLR 1204 A 1 HETATM 6 C C6 CLR . . . E 3 2.108 173.738 18.601 1 86.99 ? C6 CLR 1204 A 1 HETATM 7 C C7 CLR . . . E 3 2.174 175.242 18.678 1 84.29 ? C7 CLR 1204 A 1 HETATM 8 C C8 CLR . . . E 3 3.383 175.674 19.487 1 78.62 ? C8 CLR 1204 A 1 HETATM 9 C C9 CLR . . . E 3 3.419 174.956 20.831 1 74.87 ? C9 CLR 1204 A 1 HETATM 10 C C10 CLR . . . E 3 3.432 173.43 20.713 1 73.91 ? C10 CLR 1204 A 1 HETATM 11 C C11 CLR . . . E 3 4.58 175.472 21.69 1 75.19 ? C11 CLR 1204 A 1 HETATM 12 C C12 CLR . . . E 3 4.539 176.991 21.875 1 77.77 ? C12 CLR 1204 A 1 HETATM 13 C C13 CLR . . . E 3 4.506 177.689 20.522 1 81.43 ? C13 CLR 1204 A 1 HETATM 14 C C14 CLR . . . E 3 3.303 177.166 19.766 1 79.18 ? C14 CLR 1204 A 1 HETATM 15 C C15 CLR . . . E 3 3.158 178.098 18.576 1 79.2 ? C15 CLR 1204 A 1 HETATM 16 C C16 CLR . . . E 3 3.536 179.454 19.169 1 80.36 ? C16 CLR 1204 A 1 HETATM 17 C C17 CLR . . . E 3 4.233 179.192 20.509 1 81.19 ? C17 CLR 1204 A 1 HETATM 18 C C18 CLR . . . E 3 5.781 177.393 19.738 1 87.34 ? C18 CLR 1204 A 1 HETATM 19 C C19 CLR . . . E 3 4.858 172.929 20.515 1 71.17 ? C19 CLR 1204 A 1 HETATM 20 C C20 CLR . . . E 3 5.419 180.143 20.686 1 75.65 ? C20 CLR 1204 A 1 HETATM 21 C C21 CLR . . . E 3 6.05 180.081 22.073 1 71.29 ? C21 CLR 1204 A 1 HETATM 22 C C22 CLR . . . E 3 4.95 181.568 20.4 1 73.3 ? C22 CLR 1204 A 1 HETATM 23 C C23 CLR . . . E 3 6.064 182.586 20.608 1 71.36 ? C23 CLR 1204 A 1 HETATM 24 C C24 CLR . . . E 3 5.52 183.982 20.9 1 74.88 ? C24 CLR 1204 A 1 HETATM 25 C C25 CLR . . . E 3 5.176 184.78 19.644 1 78.5 ? C25 CLR 1204 A 1 HETATM 26 C C26 CLR . . . E 3 5.359 186.274 19.9 1 82.28 ? C26 CLR 1204 A 1 HETATM 27 C C27 CLR . . . E 3 5.979 184.337 18.423 1 72.61 ? C27 CLR 1204 A 1 HETATM 28 O O1 CLR . . . E 3 1.594 169.525 20.71 1 66.91 ? O1 CLR 1204 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #