data_5OLO # _model_server_result.job_id fY9mZ1lX8TXF0gXk0PViMg _model_server_result.datetime_utc '2024-10-28 02:36:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5olo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1217}' # _entry.id 5OLO # _exptl.entry_id 5OLO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OLO _cell.length_a 39.383 _cell.length_b 181.013 _cell.length_c 141.774 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OLO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 X NA NA . A NA 1223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 424 n n C10 C9 OLC doub 425 n n C10 C11 OLC sing 426 n n C9 C8 OLC sing 427 n n C17 C16 OLC sing 428 z n C11 C12 OLC sing 429 n n C8 C7 OLC sing 430 n n C24 C22 OLC sing 431 n n C24 O25 OLC sing 432 n n C16 C15 OLC sing 433 n n C12 C13 OLC sing 434 n n C7 C6 OLC sing 435 n n C15 C14 OLC sing 436 n n C13 C14 OLC sing 437 n n C6 C5 OLC sing 438 n n C5 C4 OLC sing 439 n n C4 C3 OLC sing 440 n n C3 C2 OLC sing 441 n n C2 C1 OLC sing 442 n n C21 C22 OLC sing 443 n n C21 O20 OLC sing 444 n n C1 O19 OLC doub 445 n n C1 O20 OLC sing 446 n n C22 O23 OLC sing 447 n n C18 H18 OLC sing 448 n n C18 H18A OLC sing 449 n n C18 H18B OLC sing 450 n n C10 H10 OLC sing 451 n n C9 H9 OLC sing 452 n n C17 H17 OLC sing 453 n n C17 H17A OLC sing 454 n n C11 H11 OLC sing 455 n n C11 H11A OLC sing 456 n n C8 H8 OLC sing 457 n n C8 H8A OLC sing 458 n n C24 H24 OLC sing 459 n n C24 H24A OLC sing 460 n n C16 H16 OLC sing 461 n n C16 H16A OLC sing 462 n n C12 H12 OLC sing 463 n n C12 H12A OLC sing 464 n n C7 H7 OLC sing 465 n n C7 H7A OLC sing 466 n n C15 H15 OLC sing 467 n n C15 H15A OLC sing 468 n n C13 H13 OLC sing 469 n n C13 H13A OLC sing 470 n n C6 H6 OLC sing 471 n n C6 H6A OLC sing 472 n n C14 H14 OLC sing 473 n n C14 H14A OLC sing 474 n n C5 H5 OLC sing 475 n n C5 H5A OLC sing 476 n n C4 H4 OLC sing 477 n n C4 H4A OLC sing 478 n n C3 H3 OLC sing 479 n n C3 H3A OLC sing 480 n n C2 H2 OLC sing 481 n n C2 H2A OLC sing 482 n n C21 H21 OLC sing 483 n n C21 H21A OLC sing 484 n n C22 H22 OLC sing 485 n n O25 HO25 OLC sing 486 n n O23 HO23 OLC sing 487 n n # _atom_sites.entry_id 5OLO _atom_sites.fract_transf_matrix[1][1] 0.025392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007053 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9XW A 1 1201 1388 9XW 9XW . C 3 CLR A 1 1202 1389 CLR CLR . D 3 CLR A 1 1203 1390 CLR CLR . E 3 CLR A 1 1204 1391 CLR CLR . F 4 OLA A 1 1205 1392 OLA OLA . G 4 OLA A 1 1206 1393 OLA OLA . H 4 OLA A 1 1207 1394 OLA OLA . I 4 OLA A 1 1208 1395 OLA OLA . J 4 OLA A 1 1209 1396 OLA OLA . K 4 OLA A 1 1210 1397 OLA OLA . L 4 OLA A 1 1211 1398 OLA OLA . M 4 OLA A 1 1212 1399 OLA OLA . N 4 OLA A 1 1213 1400 OLA OLA . O 4 OLA A 1 1214 1401 OLA OLA . P 5 OLC A 1 1215 1402 OLC OLC . Q 5 OLC A 1 1216 1403 OLC OLC . R 5 OLC A 1 1217 1404 OLC OLC . S 5 OLC A 1 1218 1405 OLC OLC . T 5 OLC A 1 1219 1406 OLC OLC . U 5 OLC A 1 1220 1407 OLC OLC . V 5 OLC A 1 1221 1408 OLC OLC . W 5 OLC A 1 1222 1409 OLC OLC . X 6 NA A 1 1223 1410 NA NA . Y 7 HOH A 1 1501 1501 HOH HOH . Y 7 HOH A 2 1502 1502 HOH HOH . Y 7 HOH A 3 1503 1503 HOH HOH . Y 7 HOH A 4 1504 1504 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . R 5 37.304 174.024 4.275 1 76.44 ? C10 OLC 1217 A 1 HETATM 2 C C9 OLC . . . R 5 37.324 173.874 5.597 1 84.06 ? C9 OLC 1217 A 1 HETATM 3 C C11 OLC . . . R 5 38.498 174.614 3.565 1 71.24 ? C11 OLC 1217 A 1 HETATM 4 C C8 OLC . . . R 5 36.131 173.285 6.309 1 87.97 ? C8 OLC 1217 A 1 HETATM 5 C C24 OLC . . . R 5 29.921 163.298 9.317 1 135.51 ? C24 OLC 1217 A 1 HETATM 6 C C7 OLC . . . R 5 36.559 172.045 7.084 1 92.91 ? C7 OLC 1217 A 1 HETATM 7 C C6 OLC . . . R 5 35.577 170.907 6.838 1 96.25 ? C6 OLC 1217 A 1 HETATM 8 C C5 OLC . . . R 5 35.706 169.817 7.894 1 102.29 ? C5 OLC 1217 A 1 HETATM 9 C C4 OLC . . . R 5 34.575 168.807 7.743 1 109.88 ? C4 OLC 1217 A 1 HETATM 10 C C3 OLC . . . R 5 34.679 168.08 6.407 1 121.27 ? C3 OLC 1217 A 1 HETATM 11 C C2 OLC . . . R 5 33.399 167.319 6.081 1 129.13 ? C2 OLC 1217 A 1 HETATM 12 C C21 OLC . . . R 5 31.753 164.44 8.069 1 140.26 ? C21 OLC 1217 A 1 HETATM 13 C C1 OLC . . . R 5 33.27 166.097 6.96 1 137.74 ? C1 OLC 1217 A 1 HETATM 14 C C22 OLC . . . R 5 30.29 164.009 8.02 1 138.91 ? C22 OLC 1217 A 1 HETATM 15 O O19 OLC . . . R 5 34.217 165.685 7.613 1 140.47 ? O19 OLC 1217 A 1 HETATM 16 O O25 OLC . . . R 5 28.527 162.97 9.301 1 132.95 ? O25 OLC 1217 A 1 HETATM 17 O O23 OLC . . . R 5 29.455 165.16 7.85 1 139.28 ? O23 OLC 1217 A 1 HETATM 18 O O20 OLC . . . R 5 31.994 165.401 7.041 1 140.8 ? O20 OLC 1217 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 416 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #