data_5OLV # _model_server_result.job_id y6cuKIddiC30YZYMKZoDYw _model_server_result.datetime_utc '2024-11-04 20:16:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5olv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":1220}' # _entry.id 5OLV # _exptl.entry_id 5OLV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OLV _cell.length_a 39.429 _cell.length_b 180.774 _cell.length_c 140.903 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OLV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 S N N ? 6 T N N ? 6 U N N ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N ? 6 AA N N ? 6 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc2 A OG SER 101 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 EA O HOH . A HOH 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 EA O HOH . A HOH 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 EA O HOH . A HOH 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 409 n n C10 C9 OLC doub 410 n n C10 C11 OLC sing 411 n n C9 C8 OLC sing 412 n n C17 C16 OLC sing 413 z n C11 C12 OLC sing 414 n n C8 C7 OLC sing 415 n n C24 C22 OLC sing 416 n n C24 O25 OLC sing 417 n n C16 C15 OLC sing 418 n n C12 C13 OLC sing 419 n n C7 C6 OLC sing 420 n n C15 C14 OLC sing 421 n n C13 C14 OLC sing 422 n n C6 C5 OLC sing 423 n n C5 C4 OLC sing 424 n n C4 C3 OLC sing 425 n n C3 C2 OLC sing 426 n n C2 C1 OLC sing 427 n n C21 C22 OLC sing 428 n n C21 O20 OLC sing 429 n n C1 O19 OLC doub 430 n n C1 O20 OLC sing 431 n n C22 O23 OLC sing 432 n n C18 H18 OLC sing 433 n n C18 H18A OLC sing 434 n n C18 H18B OLC sing 435 n n C10 H10 OLC sing 436 n n C9 H9 OLC sing 437 n n C17 H17 OLC sing 438 n n C17 H17A OLC sing 439 n n C11 H11 OLC sing 440 n n C11 H11A OLC sing 441 n n C8 H8 OLC sing 442 n n C8 H8A OLC sing 443 n n C24 H24 OLC sing 444 n n C24 H24A OLC sing 445 n n C16 H16 OLC sing 446 n n C16 H16A OLC sing 447 n n C12 H12 OLC sing 448 n n C12 H12A OLC sing 449 n n C7 H7 OLC sing 450 n n C7 H7A OLC sing 451 n n C15 H15 OLC sing 452 n n C15 H15A OLC sing 453 n n C13 H13 OLC sing 454 n n C13 H13A OLC sing 455 n n C6 H6 OLC sing 456 n n C6 H6A OLC sing 457 n n C14 H14 OLC sing 458 n n C14 H14A OLC sing 459 n n C5 H5 OLC sing 460 n n C5 H5A OLC sing 461 n n C4 H4 OLC sing 462 n n C4 H4A OLC sing 463 n n C3 H3 OLC sing 464 n n C3 H3A OLC sing 465 n n C2 H2 OLC sing 466 n n C2 H2A OLC sing 467 n n C21 H21 OLC sing 468 n n C21 H21A OLC sing 469 n n C22 H22 OLC sing 470 n n O25 HO25 OLC sing 471 n n O23 HO23 OLC sing 472 n n # _atom_sites.entry_id 5OLV _atom_sites.fract_transf_matrix[1][1] 0.025362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005532 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007097 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9Y2 A 1 1201 400 9Y2 LIG . C 3 NA A 1 1202 200 NA NA . D 4 CLR A 1 1203 201 CLR CLR . E 4 CLR A 1 1204 202 CLR CLR . F 4 CLR A 1 1205 203 CLR CLR . G 4 CLR A 1 1206 204 CLR CLR . H 5 OLA A 1 1207 206 OLA OLA . I 5 OLA A 1 1208 208 OLA OLA . J 5 OLA A 1 1209 209 OLA OLA . K 5 OLA A 1 1210 210 OLA OLA . L 5 OLA A 1 1211 211 OLA OLA . M 5 OLA A 1 1212 213 OLA OLA . N 5 OLA A 1 1213 214 OLA OLA . O 5 OLA A 1 1214 215 OLA OLA . P 5 OLA A 1 1215 217 OLA OLA . Q 5 OLA A 1 1216 218 OLA OLA . R 5 OLA A 1 1217 219 OLA OLA . S 6 OLC A 1 1218 222 OLC OLC . T 6 OLC A 1 1219 226 OLC OLC . U 6 OLC A 1 1220 227 OLC OLC . V 6 OLC A 1 1221 228 OLC OLC . W 6 OLC A 1 1222 229 OLC OLC . X 6 OLC A 1 1223 230 OLC OLC . Y 6 OLC A 1 1224 231 OLC OLC . Z 6 OLC A 1 1225 232 OLC OLC . AA 6 OLC A 1 1226 233 OLC OLC . BA 5 OLA A 1 1227 234 OLA OLA . CA 5 OLA A 1 1228 235 OLA OLA . DA 6 OLC A 1 1229 236 OLC OLC . EA 7 HOH A 1 1301 94 HOH HOH . EA 7 HOH A 2 1302 139 HOH HOH . EA 7 HOH A 3 1303 117 HOH HOH . EA 7 HOH A 4 1304 67 HOH HOH . EA 7 HOH A 5 1305 9 HOH HOH . EA 7 HOH A 6 1306 111 HOH HOH . EA 7 HOH A 7 1307 82 HOH HOH . EA 7 HOH A 8 1308 109 HOH HOH . EA 7 HOH A 9 1309 47 HOH HOH . EA 7 HOH A 10 1310 31 HOH HOH . EA 7 HOH A 11 1311 18 HOH HOH . EA 7 HOH A 12 1312 138 HOH HOH . EA 7 HOH A 13 1313 32 HOH HOH . EA 7 HOH A 14 1314 56 HOH HOH . EA 7 HOH A 15 1315 116 HOH HOH . EA 7 HOH A 16 1316 99 HOH HOH . EA 7 HOH A 17 1317 133 HOH HOH . EA 7 HOH A 18 1318 62 HOH HOH . EA 7 HOH A 19 1319 7 HOH HOH . EA 7 HOH A 20 1320 44 HOH HOH . EA 7 HOH A 21 1321 5 HOH HOH . EA 7 HOH A 22 1322 76 HOH HOH . EA 7 HOH A 23 1323 60 HOH HOH . EA 7 HOH A 24 1324 52 HOH HOH . EA 7 HOH A 25 1325 8 HOH HOH . EA 7 HOH A 26 1326 35 HOH HOH . EA 7 HOH A 27 1327 3 HOH HOH . EA 7 HOH A 28 1328 42 HOH HOH . EA 7 HOH A 29 1329 118 HOH HOH . EA 7 HOH A 30 1330 34 HOH HOH . EA 7 HOH A 31 1331 64 HOH HOH . EA 7 HOH A 32 1332 1 HOH HOH . EA 7 HOH A 33 1333 4 HOH HOH . EA 7 HOH A 34 1334 26 HOH HOH . EA 7 HOH A 35 1335 17 HOH HOH . EA 7 HOH A 36 1336 15 HOH HOH . EA 7 HOH A 37 1337 63 HOH HOH . EA 7 HOH A 38 1338 16 HOH HOH . EA 7 HOH A 39 1339 89 HOH HOH . EA 7 HOH A 40 1340 39 HOH HOH . EA 7 HOH A 41 1341 124 HOH HOH . EA 7 HOH A 42 1342 2 HOH HOH . EA 7 HOH A 43 1343 21 HOH HOH . EA 7 HOH A 44 1344 87 HOH HOH . EA 7 HOH A 45 1345 126 HOH HOH . EA 7 HOH A 46 1346 48 HOH HOH . EA 7 HOH A 47 1347 105 HOH HOH . EA 7 HOH A 48 1348 41 HOH HOH . EA 7 HOH A 49 1349 108 HOH HOH . EA 7 HOH A 50 1350 25 HOH HOH . EA 7 HOH A 51 1351 127 HOH HOH . EA 7 HOH A 52 1352 13 HOH HOH . EA 7 HOH A 53 1353 92 HOH HOH . EA 7 HOH A 54 1354 11 HOH HOH . EA 7 HOH A 55 1355 33 HOH HOH . EA 7 HOH A 56 1356 79 HOH HOH . EA 7 HOH A 57 1357 75 HOH HOH . EA 7 HOH A 58 1358 58 HOH HOH . EA 7 HOH A 59 1359 55 HOH HOH . EA 7 HOH A 60 1360 61 HOH HOH . EA 7 HOH A 61 1361 84 HOH HOH . EA 7 HOH A 62 1362 112 HOH HOH . EA 7 HOH A 63 1363 12 HOH HOH . EA 7 HOH A 64 1364 54 HOH HOH . EA 7 HOH A 65 1365 30 HOH HOH . EA 7 HOH A 66 1366 28 HOH HOH . EA 7 HOH A 67 1367 19 HOH HOH . EA 7 HOH A 68 1368 43 HOH HOH . EA 7 HOH A 69 1369 40 HOH HOH . EA 7 HOH A 70 1370 14 HOH HOH . EA 7 HOH A 71 1371 29 HOH HOH . EA 7 HOH A 72 1372 45 HOH HOH . EA 7 HOH A 73 1373 88 HOH HOH . EA 7 HOH A 74 1374 10 HOH HOH . EA 7 HOH A 75 1375 20 HOH HOH . EA 7 HOH A 76 1376 81 HOH HOH . EA 7 HOH A 77 1377 36 HOH HOH . EA 7 HOH A 78 1378 93 HOH HOH . EA 7 HOH A 79 1379 46 HOH HOH . EA 7 HOH A 80 1380 38 HOH HOH . EA 7 HOH A 81 1381 23 HOH HOH . EA 7 HOH A 82 1382 70 HOH HOH . EA 7 HOH A 83 1383 73 HOH HOH . EA 7 HOH A 84 1384 136 HOH HOH . EA 7 HOH A 85 1385 104 HOH HOH . EA 7 HOH A 86 1386 80 HOH HOH . EA 7 HOH A 87 1387 6 HOH HOH . EA 7 HOH A 88 1388 95 HOH HOH . EA 7 HOH A 89 1389 100 HOH HOH . EA 7 HOH A 90 1390 27 HOH HOH . EA 7 HOH A 91 1391 37 HOH HOH . EA 7 HOH A 92 1392 83 HOH HOH . EA 7 HOH A 93 1393 115 HOH HOH . EA 7 HOH A 94 1394 22 HOH HOH . EA 7 HOH A 95 1395 71 HOH HOH . EA 7 HOH A 96 1396 49 HOH HOH . EA 7 HOH A 97 1397 106 HOH HOH . EA 7 HOH A 98 1398 135 HOH HOH . EA 7 HOH A 99 1399 96 HOH HOH . EA 7 HOH A 100 1400 137 HOH HOH . EA 7 HOH A 101 1401 97 HOH HOH . EA 7 HOH A 102 1402 57 HOH HOH . EA 7 HOH A 103 1403 102 HOH HOH . EA 7 HOH A 104 1404 59 HOH HOH . EA 7 HOH A 105 1405 101 HOH HOH . EA 7 HOH A 106 1406 90 HOH HOH . EA 7 HOH A 107 1407 91 HOH HOH . EA 7 HOH A 108 1408 85 HOH HOH . EA 7 HOH A 109 1409 50 HOH HOH . EA 7 HOH A 110 1410 120 HOH HOH . EA 7 HOH A 111 1411 122 HOH HOH . EA 7 HOH A 112 1412 72 HOH HOH . EA 7 HOH A 113 1413 103 HOH HOH . EA 7 HOH A 114 1414 66 HOH HOH . EA 7 HOH A 115 1415 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . U 6 -42.072 4.103 12.732 1 44.94 ? C10 OLC 1220 A 1 HETATM 2 C C9 OLC . . . U 6 -41.365 5.177 12.483 1 45.53 ? C9 OLC 1220 A 1 HETATM 3 C C11 OLC . . . U 6 -43.036 3.995 13.858 1 41.95 ? C11 OLC 1220 A 1 HETATM 4 C C8 OLC . . . U 6 -41.465 6.389 13.326 1 45.02 ? C8 OLC 1220 A 1 HETATM 5 C C24 OLC . . . U 6 -41.403 19.648 14.401 1 86.32 ? C24 OLC 1220 A 1 HETATM 6 C C12 OLC . . . U 6 -43.821 2.732 13.618 1 42.86 ? C12 OLC 1220 A 1 HETATM 7 C C7 OLC . . . U 6 -40.905 7.531 12.533 1 44 ? C7 OLC 1220 A 1 HETATM 8 C C15 OLC . . . U 6 -43.761 -0.931 14.426 1 49.76 ? C15 OLC 1220 A 1 HETATM 9 C C13 OLC . . . U 6 -43.209 1.513 14.261 1 44.85 ? C13 OLC 1220 A 1 HETATM 10 C C6 OLC . . . U 6 -40.644 8.729 13.414 1 43.63 ? C6 OLC 1220 A 1 HETATM 11 C C14 OLC . . . U 6 -43.58 0.261 13.499 1 47.59 ? C14 OLC 1220 A 1 HETATM 12 C C5 OLC . . . U 6 -41.622 9.847 13.111 1 44.16 ? C5 OLC 1220 A 1 HETATM 13 C C4 OLC . . . U 6 -40.982 11.128 13.558 1 47.62 ? C4 OLC 1220 A 1 HETATM 14 C C3 OLC . . . U 6 -41.731 12.363 13.157 1 50.75 ? C3 OLC 1220 A 1 HETATM 15 C C2 OLC . . . U 6 -41.066 13.475 13.915 1 55.2 ? C2 OLC 1220 A 1 HETATM 16 C C21 OLC . . . U 6 -41.666 17.259 13.802 1 78.01 ? C21 OLC 1220 A 1 HETATM 17 C C1 OLC . . . U 6 -41.679 14.779 13.526 1 64.26 ? C1 OLC 1220 A 1 HETATM 18 C C22 OLC . . . U 6 -40.837 18.255 14.59 1 82.82 ? C22 OLC 1220 A 1 HETATM 19 O O19 OLC . . . U 6 -42.601 14.822 12.75 1 64.2 ? O19 OLC 1220 A 1 HETATM 20 O O25 OLC . . . U 6 -42.817 19.552 14.421 1 89.09 ? O25 OLC 1220 A 1 HETATM 21 O O23 OLC . . . U 6 -40.919 17.903 15.959 1 82.83 ? O23 OLC 1220 A 1 HETATM 22 O O20 OLC . . . U 6 -41.145 15.985 14.108 1 71.51 ? O20 OLC 1220 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #