data_5OM0 # _model_server_result.job_id ffiYnRKGLUxejNDyB3rLiw _model_server_result.datetime_utc '2025-01-10 23:00:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5om0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 5OM0 # _exptl.entry_id 5OM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5OM0 _cell.length_a 110.426 _cell.length_b 110.426 _cell.length_c 174.114 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 1 2 B,F,G,H,J 2 1 A,C,D,E,I 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 41 A CYS 38 1_555 A SG CYS 41 A CYS 38 11_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 B C ALA 242 B ALA 239 1_555 B N SEP 243 B SEP 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 B C SEP 243 B SEP 240 1_555 B N ASP 244 B ASP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 356 n n C C2 TRS sing 357 n n C C3 TRS sing 358 n n C N TRS sing 359 n n C1 O1 TRS sing 360 n n C1 H11 TRS sing 361 n n C1 H12 TRS sing 362 n n C2 O2 TRS sing 363 n n C2 H21 TRS sing 364 n n C2 H22 TRS sing 365 n n C3 O3 TRS sing 366 n n C3 H31 TRS sing 367 n n C3 H32 TRS sing 368 n n N HN1 TRS sing 369 n n N HN2 TRS sing 370 n n N HN3 TRS sing 371 n n O1 HO1 TRS sing 372 n n O2 HO2 TRS sing 373 n n O3 HO3 TRS sing 374 n n # _atom_sites.entry_id 5OM0 _atom_sites.fract_transf_matrix[1][1] 0.009056 _atom_sites.fract_transf_matrix[1][2] 0.005228 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 301 3 SO4 SO4 . D 2 SO4 A 1 302 4 SO4 SO4 . E 3 TRS A 1 303 2 TRS TRS . F 2 SO4 B 1 301 1 SO4 SO4 . G 2 SO4 B 1 302 2 SO4 SO4 . H 3 TRS B 1 303 1 TRS TRS . I 4 HOH A 1 401 3 HOH HOH . I 4 HOH A 2 402 7 HOH HOH . J 4 HOH B 1 401 6 HOH HOH . J 4 HOH B 2 402 2 HOH HOH . J 4 HOH B 3 403 5 HOH HOH . J 4 HOH B 4 404 4 HOH HOH . J 4 HOH B 5 405 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . H 3 23.621 20.417 29.099 1 169.27 ? C TRS 303 B 1 HETATM 2 C C1 TRS . . . H 3 22.989 20.055 30.446 1 174.92 ? C1 TRS 303 B 1 HETATM 3 C C2 TRS . . . H 3 22.598 20.268 27.962 1 164.87 ? C2 TRS 303 B 1 HETATM 4 C C3 TRS . . . H 3 24.86 19.542 28.828 1 167.86 ? C3 TRS 303 B 1 HETATM 5 N N TRS . . . H 3 24.046 21.856 29.164 1 168.19 ? N TRS 303 B 1 HETATM 6 O O1 TRS . . . H 3 22.534 18.707 30.464 1 176.98 ? O1 TRS 303 B 1 HETATM 7 O O2 TRS . . . H 3 21.407 20.992 28.236 1 161.89 ? O2 TRS 303 B 1 HETATM 8 O O3 TRS . . . H 3 25.883 19.714 29.805 1 165.79 ? O3 TRS 303 B 1 HETATM 9 H H11 TRS . . . H 3 22.159 20.725 30.668 1 175.35 ? H11 TRS 303 B 1 HETATM 10 H H12 TRS . . . H 3 23.703 20.226 31.249 1 175.15 ? H12 TRS 303 B 1 HETATM 11 H H21 TRS . . . H 3 22.287 19.233 27.827 1 164.53 ? H21 TRS 303 B 1 HETATM 12 H H22 TRS . . . H 3 23.062 20.554 27.02 1 164.65 ? H22 TRS 303 B 1 HETATM 13 H H31 TRS . . . H 3 25.203 19.721 27.811 1 168.06 ? H31 TRS 303 B 1 HETATM 14 H H32 TRS . . . H 3 24.622 18.48 28.86 1 167.8 ? H32 TRS 303 B 1 HETATM 15 H HN1 TRS . . . H 3 23.293 22.45 29.496 1 167.88 ? HN1 TRS 303 B 1 HETATM 16 H HN2 TRS . . . H 3 24.841 21.981 29.783 1 168.17 ? HN2 TRS 303 B 1 HETATM 17 H HN3 TRS . . . H 3 24.313 22.191 28.244 1 168.29 ? HN3 TRS 303 B 1 HETATM 18 H HO1 TRS . . . H 3 21.588 18.714 30.162 1 177.12 ? HO1 TRS 303 B 1 HETATM 19 H HO2 TRS . . . H 3 20.635 20.374 28.143 1 161.13 ? HO2 TRS 303 B 1 HETATM 20 H HO3 TRS . . . H 3 26.606 19.058 29.623 1 165.26 ? HO3 TRS 303 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #