data_5OM1 # _model_server_result.job_id DKe9YG5_HOVF1g_WsK6NEA _model_server_result.datetime_utc '2024-11-16 17:42:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5om1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1216}' # _entry.id 5OM1 # _exptl.entry_id 5OM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OM1 _cell.length_a 39.537 _cell.length_b 179.854 _cell.length_c 140.323 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc2 A OG SER 101 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 IA O HOH . A HOH 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 IA O HOH . A HOH 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 IA O HOH . A HOH 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 314 n n C1 O2 OLA sing 315 n n C1 C2 OLA sing 316 n n O2 HO2 OLA sing 317 n n C2 C3 OLA sing 318 n n C2 H21 OLA sing 319 n n C2 H22 OLA sing 320 n n C3 C4 OLA sing 321 n n C3 H31 OLA sing 322 n n C3 H32 OLA sing 323 n n C4 C5 OLA sing 324 n n C4 H41 OLA sing 325 n n C4 H42 OLA sing 326 n n C5 C6 OLA sing 327 n n C5 H51 OLA sing 328 n n C5 H52 OLA sing 329 n n C6 C7 OLA sing 330 n n C6 H61 OLA sing 331 n n C6 H62 OLA sing 332 n n C7 C8 OLA sing 333 n n C7 H71 OLA sing 334 n n C7 H72 OLA sing 335 n n C8 C9 OLA sing 336 n n C8 H81 OLA sing 337 n n C8 H82 OLA sing 338 n n C9 C10 OLA doub 339 z n C9 H9 OLA sing 340 n n C10 C11 OLA sing 341 n n C10 H10 OLA sing 342 n n C11 C12 OLA sing 343 n n C11 H111 OLA sing 344 n n C11 H112 OLA sing 345 n n C12 C13 OLA sing 346 n n C12 H121 OLA sing 347 n n C12 H122 OLA sing 348 n n C13 C14 OLA sing 349 n n C13 H131 OLA sing 350 n n C13 H132 OLA sing 351 n n C14 C15 OLA sing 352 n n C14 H141 OLA sing 353 n n C14 H142 OLA sing 354 n n C15 C16 OLA sing 355 n n C15 H151 OLA sing 356 n n C15 H152 OLA sing 357 n n C16 C17 OLA sing 358 n n C16 H161 OLA sing 359 n n C16 H162 OLA sing 360 n n C17 C18 OLA sing 361 n n C17 H171 OLA sing 362 n n C17 H172 OLA sing 363 n n C18 H181 OLA sing 364 n n C18 H182 OLA sing 365 n n C18 H183 OLA sing 366 n n # _atom_sites.entry_id 5OM1 _atom_sites.fract_transf_matrix[1][1] 0.025293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T4E A 1 1201 400 T4E LIG . C 3 NA A 1 1202 200 NA NA . D 4 OLA A 1 1203 201 OLA OLA . E 5 CLR A 1 1204 202 CLR CLR . F 5 CLR A 1 1205 203 CLR CLR . G 5 CLR A 1 1206 204 CLR CLR . H 5 CLR A 1 1207 205 CLR CLR . I 4 OLA A 1 1208 206 OLA OLA . J 4 OLA A 1 1209 208 OLA OLA . K 4 OLA A 1 1210 209 OLA OLA . L 4 OLA A 1 1211 210 OLA OLA . M 4 OLA A 1 1212 211 OLA OLA . N 4 OLA A 1 1213 212 OLA OLA . O 4 OLA A 1 1214 213 OLA OLA . P 4 OLA A 1 1215 214 OLA OLA . Q 4 OLA A 1 1216 215 OLA OLA . R 4 OLA A 1 1217 216 OLA OLA . S 4 OLA A 1 1218 217 OLA OLA . T 4 OLA A 1 1219 218 OLA OLA . U 4 OLA A 1 1220 219 OLA OLA . V 6 OLC A 1 1221 220 OLC OLC . W 6 OLC A 1 1222 221 OLC OLC . X 6 OLC A 1 1223 222 OLC OLC . Y 6 OLC A 1 1224 223 OLC OLC . Z 6 OLC A 1 1225 224 OLC OLC . AA 6 OLC A 1 1226 225 OLC OLC . BA 6 OLC A 1 1227 226 OLC OLC . CA 6 OLC A 1 1228 227 OLC OLC . DA 6 OLC A 1 1229 228 OLC OLC . EA 6 OLC A 1 1230 229 OLC OLC . FA 6 OLC A 1 1231 230 OLC OLC . GA 6 OLC A 1 1232 231 OLC OLC . HA 7 CL A 1 1233 232 CL CL . IA 8 HOH A 1 1301 109 HOH HOH . IA 8 HOH A 2 1302 104 HOH HOH . IA 8 HOH A 3 1303 168 HOH HOH . IA 8 HOH A 4 1304 145 HOH HOH . IA 8 HOH A 5 1305 173 HOH HOH . IA 8 HOH A 6 1306 12 HOH HOH . IA 8 HOH A 7 1307 161 HOH HOH . IA 8 HOH A 8 1308 31 HOH HOH . IA 8 HOH A 9 1309 36 HOH HOH . IA 8 HOH A 10 1310 13 HOH HOH . IA 8 HOH A 11 1311 33 HOH HOH . IA 8 HOH A 12 1312 64 HOH HOH . IA 8 HOH A 13 1313 135 HOH HOH . IA 8 HOH A 14 1314 150 HOH HOH . IA 8 HOH A 15 1315 107 HOH HOH . IA 8 HOH A 16 1316 129 HOH HOH . IA 8 HOH A 17 1317 48 HOH HOH . IA 8 HOH A 18 1318 52 HOH HOH . IA 8 HOH A 19 1319 70 HOH HOH . IA 8 HOH A 20 1320 182 HOH HOH . IA 8 HOH A 21 1321 29 HOH HOH . IA 8 HOH A 22 1322 47 HOH HOH . IA 8 HOH A 23 1323 2 HOH HOH . IA 8 HOH A 24 1324 5 HOH HOH . IA 8 HOH A 25 1325 128 HOH HOH . IA 8 HOH A 26 1326 10 HOH HOH . IA 8 HOH A 27 1327 6 HOH HOH . IA 8 HOH A 28 1328 50 HOH HOH . IA 8 HOH A 29 1329 111 HOH HOH . IA 8 HOH A 30 1330 3 HOH HOH . IA 8 HOH A 31 1331 62 HOH HOH . IA 8 HOH A 32 1332 120 HOH HOH . IA 8 HOH A 33 1333 43 HOH HOH . IA 8 HOH A 34 1334 4 HOH HOH . IA 8 HOH A 35 1335 90 HOH HOH . IA 8 HOH A 36 1336 18 HOH HOH . IA 8 HOH A 37 1337 16 HOH HOH . IA 8 HOH A 38 1338 61 HOH HOH . IA 8 HOH A 39 1339 67 HOH HOH . IA 8 HOH A 40 1340 42 HOH HOH . IA 8 HOH A 41 1341 17 HOH HOH . IA 8 HOH A 42 1342 25 HOH HOH . IA 8 HOH A 43 1343 167 HOH HOH . IA 8 HOH A 44 1344 28 HOH HOH . IA 8 HOH A 45 1345 44 HOH HOH . IA 8 HOH A 46 1346 40 HOH HOH . IA 8 HOH A 47 1347 83 HOH HOH . IA 8 HOH A 48 1348 23 HOH HOH . IA 8 HOH A 49 1349 77 HOH HOH . IA 8 HOH A 50 1350 21 HOH HOH . IA 8 HOH A 51 1351 131 HOH HOH . IA 8 HOH A 52 1352 37 HOH HOH . IA 8 HOH A 53 1353 1 HOH HOH . IA 8 HOH A 54 1354 165 HOH HOH . IA 8 HOH A 55 1355 11 HOH HOH . IA 8 HOH A 56 1356 130 HOH HOH . IA 8 HOH A 57 1357 49 HOH HOH . IA 8 HOH A 58 1358 39 HOH HOH . IA 8 HOH A 59 1359 24 HOH HOH . IA 8 HOH A 60 1360 32 HOH HOH . IA 8 HOH A 61 1361 19 HOH HOH . IA 8 HOH A 62 1362 41 HOH HOH . IA 8 HOH A 63 1363 9 HOH HOH . IA 8 HOH A 64 1364 58 HOH HOH . IA 8 HOH A 65 1365 46 HOH HOH . IA 8 HOH A 66 1366 112 HOH HOH . IA 8 HOH A 67 1367 139 HOH HOH . IA 8 HOH A 68 1368 54 HOH HOH . IA 8 HOH A 69 1369 34 HOH HOH . IA 8 HOH A 70 1370 102 HOH HOH . IA 8 HOH A 71 1371 14 HOH HOH . IA 8 HOH A 72 1372 149 HOH HOH . IA 8 HOH A 73 1373 152 HOH HOH . IA 8 HOH A 74 1374 75 HOH HOH . IA 8 HOH A 75 1375 114 HOH HOH . IA 8 HOH A 76 1376 87 HOH HOH . IA 8 HOH A 77 1377 154 HOH HOH . IA 8 HOH A 78 1378 125 HOH HOH . IA 8 HOH A 79 1379 56 HOH HOH . IA 8 HOH A 80 1380 35 HOH HOH . IA 8 HOH A 81 1381 8 HOH HOH . IA 8 HOH A 82 1382 45 HOH HOH . IA 8 HOH A 83 1383 63 HOH HOH . IA 8 HOH A 84 1384 65 HOH HOH . IA 8 HOH A 85 1385 100 HOH HOH . IA 8 HOH A 86 1386 92 HOH HOH . IA 8 HOH A 87 1387 176 HOH HOH . IA 8 HOH A 88 1388 59 HOH HOH . IA 8 HOH A 89 1389 26 HOH HOH . IA 8 HOH A 90 1390 134 HOH HOH . IA 8 HOH A 91 1391 72 HOH HOH . IA 8 HOH A 92 1392 68 HOH HOH . IA 8 HOH A 93 1393 53 HOH HOH . IA 8 HOH A 94 1394 20 HOH HOH . IA 8 HOH A 95 1395 101 HOH HOH . IA 8 HOH A 96 1396 22 HOH HOH . IA 8 HOH A 97 1397 106 HOH HOH . IA 8 HOH A 98 1398 27 HOH HOH . IA 8 HOH A 99 1399 7 HOH HOH . IA 8 HOH A 100 1400 119 HOH HOH . IA 8 HOH A 101 1401 73 HOH HOH . IA 8 HOH A 102 1402 69 HOH HOH . IA 8 HOH A 103 1403 30 HOH HOH . IA 8 HOH A 104 1404 126 HOH HOH . IA 8 HOH A 105 1405 158 HOH HOH . IA 8 HOH A 106 1406 57 HOH HOH . IA 8 HOH A 107 1407 162 HOH HOH . IA 8 HOH A 108 1408 157 HOH HOH . IA 8 HOH A 109 1409 82 HOH HOH . IA 8 HOH A 110 1410 156 HOH HOH . IA 8 HOH A 111 1411 15 HOH HOH . IA 8 HOH A 112 1412 81 HOH HOH . IA 8 HOH A 113 1413 118 HOH HOH . IA 8 HOH A 114 1414 143 HOH HOH . IA 8 HOH A 115 1415 181 HOH HOH . IA 8 HOH A 116 1416 178 HOH HOH . IA 8 HOH A 117 1417 144 HOH HOH . IA 8 HOH A 118 1418 110 HOH HOH . IA 8 HOH A 119 1419 138 HOH HOH . IA 8 HOH A 120 1420 180 HOH HOH . IA 8 HOH A 121 1421 76 HOH HOH . IA 8 HOH A 122 1422 164 HOH HOH . IA 8 HOH A 123 1423 85 HOH HOH . IA 8 HOH A 124 1424 155 HOH HOH . IA 8 HOH A 125 1425 55 HOH HOH . IA 8 HOH A 126 1426 78 HOH HOH . IA 8 HOH A 127 1427 121 HOH HOH . IA 8 HOH A 128 1428 99 HOH HOH . IA 8 HOH A 129 1429 153 HOH HOH . IA 8 HOH A 130 1430 179 HOH HOH . IA 8 HOH A 131 1431 122 HOH HOH . IA 8 HOH A 132 1432 159 HOH HOH . IA 8 HOH A 133 1433 94 HOH HOH . IA 8 HOH A 134 1434 148 HOH HOH . IA 8 HOH A 135 1435 93 HOH HOH . IA 8 HOH A 136 1436 86 HOH HOH . IA 8 HOH A 137 1437 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . Q 4 1.207 203.668 25.958 1 85.07 ? C1 OLA 1216 A 1 HETATM 2 O O1 OLA . . . Q 4 0.354 204.206 25.199 1 85.86 ? O1 OLA 1216 A 1 HETATM 3 O O2 OLA . . . Q 4 1.279 204.074 27.13 1 85.86 ? O2 OLA 1216 A 1 HETATM 4 C C2 OLA . . . Q 4 2.124 202.561 25.475 1 83 ? C2 OLA 1216 A 1 HETATM 5 C C3 OLA . . . Q 4 1.387 201.538 24.607 1 80.4 ? C3 OLA 1216 A 1 HETATM 6 C C4 OLA . . . Q 4 1.153 200.207 25.312 1 78.54 ? C4 OLA 1216 A 1 HETATM 7 C C5 OLA . . . Q 4 2.226 199.174 25.031 1 77.37 ? C5 OLA 1216 A 1 HETATM 8 C C6 OLA . . . Q 4 2.432 198.144 26.134 1 76.54 ? C6 OLA 1216 A 1 HETATM 9 C C7 OLA . . . Q 4 1.891 196.773 25.733 1 76 ? C7 OLA 1216 A 1 HETATM 10 C C8 OLA . . . Q 4 2.935 195.677 25.612 1 74.7 ? C8 OLA 1216 A 1 HETATM 11 C C9 OLA . . . Q 4 2.582 194.791 24.425 1 72.97 ? C9 OLA 1216 A 1 HETATM 12 C C10 OLA . . . Q 4 2.894 193.482 24.288 1 70.62 ? C10 OLA 1216 A 1 HETATM 13 C C11 OLA . . . Q 4 3.66 192.687 25.323 1 68.7 ? C11 OLA 1216 A 1 HETATM 14 C C12 OLA . . . Q 4 3.353 191.18 25.224 1 67.66 ? C12 OLA 1216 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 14 #