data_5OM1 # _model_server_result.job_id GWYWccc7BLKSsU9cBX0UJQ _model_server_result.datetime_utc '2024-11-16 17:58:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5om1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":1226}' # _entry.id 5OM1 # _exptl.entry_id 5OM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OM1 _cell.length_a 39.537 _cell.length_b 179.854 _cell.length_c 140.323 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 V N N ? 6 W N N ? 6 X N N ? 6 Y N N ? 6 Z N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 EA N N ? 6 FA N N ? 6 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc2 A OG SER 101 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 IA O HOH . A HOH 1310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 IA O HOH . A HOH 1339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 IA O HOH . A HOH 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 367 n n C10 C9 OLC doub 368 n n C10 C11 OLC sing 369 n n C9 C8 OLC sing 370 n n C17 C16 OLC sing 371 z n C11 C12 OLC sing 372 n n C8 C7 OLC sing 373 n n C24 C22 OLC sing 374 n n C24 O25 OLC sing 375 n n C16 C15 OLC sing 376 n n C12 C13 OLC sing 377 n n C7 C6 OLC sing 378 n n C15 C14 OLC sing 379 n n C13 C14 OLC sing 380 n n C6 C5 OLC sing 381 n n C5 C4 OLC sing 382 n n C4 C3 OLC sing 383 n n C3 C2 OLC sing 384 n n C2 C1 OLC sing 385 n n C21 C22 OLC sing 386 n n C21 O20 OLC sing 387 n n C1 O19 OLC doub 388 n n C1 O20 OLC sing 389 n n C22 O23 OLC sing 390 n n C18 H18 OLC sing 391 n n C18 H18A OLC sing 392 n n C18 H18B OLC sing 393 n n C10 H10 OLC sing 394 n n C9 H9 OLC sing 395 n n C17 H17 OLC sing 396 n n C17 H17A OLC sing 397 n n C11 H11 OLC sing 398 n n C11 H11A OLC sing 399 n n C8 H8 OLC sing 400 n n C8 H8A OLC sing 401 n n C24 H24 OLC sing 402 n n C24 H24A OLC sing 403 n n C16 H16 OLC sing 404 n n C16 H16A OLC sing 405 n n C12 H12 OLC sing 406 n n C12 H12A OLC sing 407 n n C7 H7 OLC sing 408 n n C7 H7A OLC sing 409 n n C15 H15 OLC sing 410 n n C15 H15A OLC sing 411 n n C13 H13 OLC sing 412 n n C13 H13A OLC sing 413 n n C6 H6 OLC sing 414 n n C6 H6A OLC sing 415 n n C14 H14 OLC sing 416 n n C14 H14A OLC sing 417 n n C5 H5 OLC sing 418 n n C5 H5A OLC sing 419 n n C4 H4 OLC sing 420 n n C4 H4A OLC sing 421 n n C3 H3 OLC sing 422 n n C3 H3A OLC sing 423 n n C2 H2 OLC sing 424 n n C2 H2A OLC sing 425 n n C21 H21 OLC sing 426 n n C21 H21A OLC sing 427 n n C22 H22 OLC sing 428 n n O25 HO25 OLC sing 429 n n O23 HO23 OLC sing 430 n n # _atom_sites.entry_id 5OM1 _atom_sites.fract_transf_matrix[1][1] 0.025293 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00556 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T4E A 1 1201 400 T4E LIG . C 3 NA A 1 1202 200 NA NA . D 4 OLA A 1 1203 201 OLA OLA . E 5 CLR A 1 1204 202 CLR CLR . F 5 CLR A 1 1205 203 CLR CLR . G 5 CLR A 1 1206 204 CLR CLR . H 5 CLR A 1 1207 205 CLR CLR . I 4 OLA A 1 1208 206 OLA OLA . J 4 OLA A 1 1209 208 OLA OLA . K 4 OLA A 1 1210 209 OLA OLA . L 4 OLA A 1 1211 210 OLA OLA . M 4 OLA A 1 1212 211 OLA OLA . N 4 OLA A 1 1213 212 OLA OLA . O 4 OLA A 1 1214 213 OLA OLA . P 4 OLA A 1 1215 214 OLA OLA . Q 4 OLA A 1 1216 215 OLA OLA . R 4 OLA A 1 1217 216 OLA OLA . S 4 OLA A 1 1218 217 OLA OLA . T 4 OLA A 1 1219 218 OLA OLA . U 4 OLA A 1 1220 219 OLA OLA . V 6 OLC A 1 1221 220 OLC OLC . W 6 OLC A 1 1222 221 OLC OLC . X 6 OLC A 1 1223 222 OLC OLC . Y 6 OLC A 1 1224 223 OLC OLC . Z 6 OLC A 1 1225 224 OLC OLC . AA 6 OLC A 1 1226 225 OLC OLC . BA 6 OLC A 1 1227 226 OLC OLC . CA 6 OLC A 1 1228 227 OLC OLC . DA 6 OLC A 1 1229 228 OLC OLC . EA 6 OLC A 1 1230 229 OLC OLC . FA 6 OLC A 1 1231 230 OLC OLC . GA 6 OLC A 1 1232 231 OLC OLC . HA 7 CL A 1 1233 232 CL CL . IA 8 HOH A 1 1301 109 HOH HOH . IA 8 HOH A 2 1302 104 HOH HOH . IA 8 HOH A 3 1303 168 HOH HOH . IA 8 HOH A 4 1304 145 HOH HOH . IA 8 HOH A 5 1305 173 HOH HOH . IA 8 HOH A 6 1306 12 HOH HOH . IA 8 HOH A 7 1307 161 HOH HOH . IA 8 HOH A 8 1308 31 HOH HOH . IA 8 HOH A 9 1309 36 HOH HOH . IA 8 HOH A 10 1310 13 HOH HOH . IA 8 HOH A 11 1311 33 HOH HOH . IA 8 HOH A 12 1312 64 HOH HOH . IA 8 HOH A 13 1313 135 HOH HOH . IA 8 HOH A 14 1314 150 HOH HOH . IA 8 HOH A 15 1315 107 HOH HOH . IA 8 HOH A 16 1316 129 HOH HOH . IA 8 HOH A 17 1317 48 HOH HOH . IA 8 HOH A 18 1318 52 HOH HOH . IA 8 HOH A 19 1319 70 HOH HOH . IA 8 HOH A 20 1320 182 HOH HOH . IA 8 HOH A 21 1321 29 HOH HOH . IA 8 HOH A 22 1322 47 HOH HOH . IA 8 HOH A 23 1323 2 HOH HOH . IA 8 HOH A 24 1324 5 HOH HOH . IA 8 HOH A 25 1325 128 HOH HOH . IA 8 HOH A 26 1326 10 HOH HOH . IA 8 HOH A 27 1327 6 HOH HOH . IA 8 HOH A 28 1328 50 HOH HOH . IA 8 HOH A 29 1329 111 HOH HOH . IA 8 HOH A 30 1330 3 HOH HOH . IA 8 HOH A 31 1331 62 HOH HOH . IA 8 HOH A 32 1332 120 HOH HOH . IA 8 HOH A 33 1333 43 HOH HOH . IA 8 HOH A 34 1334 4 HOH HOH . IA 8 HOH A 35 1335 90 HOH HOH . IA 8 HOH A 36 1336 18 HOH HOH . IA 8 HOH A 37 1337 16 HOH HOH . IA 8 HOH A 38 1338 61 HOH HOH . IA 8 HOH A 39 1339 67 HOH HOH . IA 8 HOH A 40 1340 42 HOH HOH . IA 8 HOH A 41 1341 17 HOH HOH . IA 8 HOH A 42 1342 25 HOH HOH . IA 8 HOH A 43 1343 167 HOH HOH . IA 8 HOH A 44 1344 28 HOH HOH . IA 8 HOH A 45 1345 44 HOH HOH . IA 8 HOH A 46 1346 40 HOH HOH . IA 8 HOH A 47 1347 83 HOH HOH . IA 8 HOH A 48 1348 23 HOH HOH . IA 8 HOH A 49 1349 77 HOH HOH . IA 8 HOH A 50 1350 21 HOH HOH . IA 8 HOH A 51 1351 131 HOH HOH . IA 8 HOH A 52 1352 37 HOH HOH . IA 8 HOH A 53 1353 1 HOH HOH . IA 8 HOH A 54 1354 165 HOH HOH . IA 8 HOH A 55 1355 11 HOH HOH . IA 8 HOH A 56 1356 130 HOH HOH . IA 8 HOH A 57 1357 49 HOH HOH . IA 8 HOH A 58 1358 39 HOH HOH . IA 8 HOH A 59 1359 24 HOH HOH . IA 8 HOH A 60 1360 32 HOH HOH . IA 8 HOH A 61 1361 19 HOH HOH . IA 8 HOH A 62 1362 41 HOH HOH . IA 8 HOH A 63 1363 9 HOH HOH . IA 8 HOH A 64 1364 58 HOH HOH . IA 8 HOH A 65 1365 46 HOH HOH . IA 8 HOH A 66 1366 112 HOH HOH . IA 8 HOH A 67 1367 139 HOH HOH . IA 8 HOH A 68 1368 54 HOH HOH . IA 8 HOH A 69 1369 34 HOH HOH . IA 8 HOH A 70 1370 102 HOH HOH . IA 8 HOH A 71 1371 14 HOH HOH . IA 8 HOH A 72 1372 149 HOH HOH . IA 8 HOH A 73 1373 152 HOH HOH . IA 8 HOH A 74 1374 75 HOH HOH . IA 8 HOH A 75 1375 114 HOH HOH . IA 8 HOH A 76 1376 87 HOH HOH . IA 8 HOH A 77 1377 154 HOH HOH . IA 8 HOH A 78 1378 125 HOH HOH . IA 8 HOH A 79 1379 56 HOH HOH . IA 8 HOH A 80 1380 35 HOH HOH . IA 8 HOH A 81 1381 8 HOH HOH . IA 8 HOH A 82 1382 45 HOH HOH . IA 8 HOH A 83 1383 63 HOH HOH . IA 8 HOH A 84 1384 65 HOH HOH . IA 8 HOH A 85 1385 100 HOH HOH . IA 8 HOH A 86 1386 92 HOH HOH . IA 8 HOH A 87 1387 176 HOH HOH . IA 8 HOH A 88 1388 59 HOH HOH . IA 8 HOH A 89 1389 26 HOH HOH . IA 8 HOH A 90 1390 134 HOH HOH . IA 8 HOH A 91 1391 72 HOH HOH . IA 8 HOH A 92 1392 68 HOH HOH . IA 8 HOH A 93 1393 53 HOH HOH . IA 8 HOH A 94 1394 20 HOH HOH . IA 8 HOH A 95 1395 101 HOH HOH . IA 8 HOH A 96 1396 22 HOH HOH . IA 8 HOH A 97 1397 106 HOH HOH . IA 8 HOH A 98 1398 27 HOH HOH . IA 8 HOH A 99 1399 7 HOH HOH . IA 8 HOH A 100 1400 119 HOH HOH . IA 8 HOH A 101 1401 73 HOH HOH . IA 8 HOH A 102 1402 69 HOH HOH . IA 8 HOH A 103 1403 30 HOH HOH . IA 8 HOH A 104 1404 126 HOH HOH . IA 8 HOH A 105 1405 158 HOH HOH . IA 8 HOH A 106 1406 57 HOH HOH . IA 8 HOH A 107 1407 162 HOH HOH . IA 8 HOH A 108 1408 157 HOH HOH . IA 8 HOH A 109 1409 82 HOH HOH . IA 8 HOH A 110 1410 156 HOH HOH . IA 8 HOH A 111 1411 15 HOH HOH . IA 8 HOH A 112 1412 81 HOH HOH . IA 8 HOH A 113 1413 118 HOH HOH . IA 8 HOH A 114 1414 143 HOH HOH . IA 8 HOH A 115 1415 181 HOH HOH . IA 8 HOH A 116 1416 178 HOH HOH . IA 8 HOH A 117 1417 144 HOH HOH . IA 8 HOH A 118 1418 110 HOH HOH . IA 8 HOH A 119 1419 138 HOH HOH . IA 8 HOH A 120 1420 180 HOH HOH . IA 8 HOH A 121 1421 76 HOH HOH . IA 8 HOH A 122 1422 164 HOH HOH . IA 8 HOH A 123 1423 85 HOH HOH . IA 8 HOH A 124 1424 155 HOH HOH . IA 8 HOH A 125 1425 55 HOH HOH . IA 8 HOH A 126 1426 78 HOH HOH . IA 8 HOH A 127 1427 121 HOH HOH . IA 8 HOH A 128 1428 99 HOH HOH . IA 8 HOH A 129 1429 153 HOH HOH . IA 8 HOH A 130 1430 179 HOH HOH . IA 8 HOH A 131 1431 122 HOH HOH . IA 8 HOH A 132 1432 159 HOH HOH . IA 8 HOH A 133 1433 94 HOH HOH . IA 8 HOH A 134 1434 148 HOH HOH . IA 8 HOH A 135 1435 93 HOH HOH . IA 8 HOH A 136 1436 86 HOH HOH . IA 8 HOH A 137 1437 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . AA 6 6.134 184.291 27.59 1 66.12 ? C10 OLC 1226 A 1 HETATM 2 C C9 OLC . . . AA 6 6.262 183.223 28.357 1 66.86 ? C9 OLC 1226 A 1 HETATM 3 C C8 OLC . . . AA 6 5.778 181.9 27.846 1 68.61 ? C8 OLC 1226 A 1 HETATM 4 C C24 OLC . . . AA 6 2.861 169.185 30.301 1 74.65 ? C24 OLC 1226 A 1 HETATM 5 C C7 OLC . . . AA 6 5.818 180.891 28.981 1 69.84 ? C7 OLC 1226 A 1 HETATM 6 C C6 OLC . . . AA 6 4.63 179.923 28.997 1 69.86 ? C6 OLC 1226 A 1 HETATM 7 C C5 OLC . . . AA 6 5.039 178.637 29.683 1 69.6 ? C5 OLC 1226 A 1 HETATM 8 C C4 OLC . . . AA 6 3.901 177.695 30.012 1 69.81 ? C4 OLC 1226 A 1 HETATM 9 C C3 OLC . . . AA 6 4.406 176.266 29.914 1 69.86 ? C3 OLC 1226 A 1 HETATM 10 C C2 OLC . . . AA 6 3.705 175.273 30.823 1 71.35 ? C2 OLC 1226 A 1 HETATM 11 C C21 OLC . . . AA 6 3.061 171.629 30.46 1 73.92 ? C21 OLC 1226 A 1 HETATM 12 C C1 OLC . . . AA 6 3.739 173.941 30.131 1 73.36 ? C1 OLC 1226 A 1 HETATM 13 C C22 OLC . . . AA 6 3.824 170.335 30.397 1 74.48 ? C22 OLC 1226 A 1 HETATM 14 O O19 OLC . . . AA 6 3.596 173.91 28.956 1 75.22 ? O19 OLC 1226 A 1 HETATM 15 O O25 OLC . . . AA 6 3.575 168.015 29.936 1 74.97 ? O25 OLC 1226 A 1 HETATM 16 O O23 OLC . . . AA 6 4.553 170.349 29.201 1 75.06 ? O23 OLC 1226 A 1 HETATM 17 O O20 OLC . . . AA 6 3.937 172.677 30.783 1 73.34 ? O20 OLC 1226 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #