data_5OM4 # _model_server_result.job_id y2X5Zkf8LjE-FyGYe3OOzA _model_server_result.datetime_utc '2024-11-13 03:38:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5om4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 5OM4 # _exptl.entry_id 5OM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OM4 _cell.length_a 39.465 _cell.length_b 179.109 _cell.length_c 140.032 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 71 1_555 A SG CYS 169 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 84 A CYS 74 1_555 A SG CYS 156 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 87 A CYS 77 1_555 A SG CYS 176 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 365 A CYS 259 1_555 A SG CYS 368 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OD1 ASP 62 A ASP 52 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc2 A OG SER 101 A SER 91 1_555 C NA NA . A NA 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc3 C NA NA . A NA 1202 1_555 IA O HOH . A HOH 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc4 C NA NA . A NA 1202 1_555 IA O HOH . A HOH 1373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 C NA NA . A NA 1202 1_555 IA O HOH . A HOH 1382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OM4 _atom_sites.fract_transf_matrix[1][1] 0.025339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007141 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T4E A 1 1201 500 T4E LIG . C 3 NA A 1 1202 194 NA NA . D 4 CLR A 1 1203 195 CLR CLR . E 4 CLR A 1 1204 196 CLR CLR . F 4 CLR A 1 1205 197 CLR CLR . G 4 CLR A 1 1206 198 CLR CLR . H 5 OLA A 1 1207 199 OLA OLA . I 5 OLA A 1 1208 200 OLA OLA . J 5 OLA A 1 1209 201 OLA OLA . K 5 OLA A 1 1210 202 OLA OLA . L 5 OLA A 1 1211 203 OLA OLA . M 5 OLA A 1 1212 204 OLA OLA . N 5 OLA A 1 1213 205 OLA OLA . O 5 OLA A 1 1214 206 OLA OLA . P 5 OLA A 1 1215 207 OLA OLA . Q 5 OLA A 1 1216 208 OLA OLA . R 5 OLA A 1 1217 209 OLA OLA . S 5 OLA A 1 1218 210 OLA OLA . T 5 OLA A 1 1219 211 OLA OLA . U 5 OLA A 1 1220 212 OLA OLA . V 5 OLA A 1 1221 213 OLA OLA . W 5 OLA A 1 1222 214 OLA OLA . X 6 OLC A 1 1223 216 OLC OLC . Y 6 OLC A 1 1224 217 OLC OLC . Z 6 OLC A 1 1225 218 OLC OLC . AA 6 OLC A 1 1226 219 OLC OLC . BA 6 OLC A 1 1227 220 OLC OLC . CA 6 OLC A 1 1228 221 OLC OLC . DA 6 OLC A 1 1229 222 OLC OLC . EA 6 OLC A 1 1230 223 OLC OLC . FA 6 OLC A 1 1231 224 OLC OLC . GA 6 OLC A 1 1232 225 OLC OLC . HA 6 OLC A 1 1233 226 OLC OLC . IA 7 HOH A 1 1301 96 HOH HOH . IA 7 HOH A 2 1302 120 HOH HOH . IA 7 HOH A 3 1303 36 HOH HOH . IA 7 HOH A 4 1304 64 HOH HOH . IA 7 HOH A 5 1305 156 HOH HOH . IA 7 HOH A 6 1306 100 HOH HOH . IA 7 HOH A 7 1307 12 HOH HOH . IA 7 HOH A 8 1308 137 HOH HOH . IA 7 HOH A 9 1309 67 HOH HOH . IA 7 HOH A 10 1310 134 HOH HOH . IA 7 HOH A 11 1311 109 HOH HOH . IA 7 HOH A 12 1312 69 HOH HOH . IA 7 HOH A 13 1313 61 HOH HOH . IA 7 HOH A 14 1314 31 HOH HOH . IA 7 HOH A 15 1315 49 HOH HOH . IA 7 HOH A 16 1316 52 HOH HOH . IA 7 HOH A 17 1317 74 HOH HOH . IA 7 HOH A 18 1318 48 HOH HOH . IA 7 HOH A 19 1319 145 HOH HOH . IA 7 HOH A 20 1320 43 HOH HOH . IA 7 HOH A 21 1321 6 HOH HOH . IA 7 HOH A 22 1322 118 HOH HOH . IA 7 HOH A 23 1323 51 HOH HOH . IA 7 HOH A 24 1324 190 HOH HOH . IA 7 HOH A 25 1325 130 HOH HOH . IA 7 HOH A 26 1326 157 HOH HOH . IA 7 HOH A 27 1327 102 HOH HOH . IA 7 HOH A 28 1328 28 HOH HOH . IA 7 HOH A 29 1329 101 HOH HOH . IA 7 HOH A 30 1330 78 HOH HOH . IA 7 HOH A 31 1331 21 HOH HOH . IA 7 HOH A 32 1332 18 HOH HOH . IA 7 HOH A 33 1333 71 HOH HOH . IA 7 HOH A 34 1334 33 HOH HOH . IA 7 HOH A 35 1335 23 HOH HOH . IA 7 HOH A 36 1336 60 HOH HOH . IA 7 HOH A 37 1337 81 HOH HOH . IA 7 HOH A 38 1338 192 HOH HOH . IA 7 HOH A 39 1339 29 HOH HOH . IA 7 HOH A 40 1340 3 HOH HOH . IA 7 HOH A 41 1341 44 HOH HOH . IA 7 HOH A 42 1342 17 HOH HOH . IA 7 HOH A 43 1343 121 HOH HOH . IA 7 HOH A 44 1344 2 HOH HOH . IA 7 HOH A 45 1345 87 HOH HOH . IA 7 HOH A 46 1346 9 HOH HOH . IA 7 HOH A 47 1347 4 HOH HOH . IA 7 HOH A 48 1348 154 HOH HOH . IA 7 HOH A 49 1349 25 HOH HOH . IA 7 HOH A 50 1350 155 HOH HOH . IA 7 HOH A 51 1351 19 HOH HOH . IA 7 HOH A 52 1352 11 HOH HOH . IA 7 HOH A 53 1353 152 HOH HOH . IA 7 HOH A 54 1354 132 HOH HOH . IA 7 HOH A 55 1355 63 HOH HOH . IA 7 HOH A 56 1356 144 HOH HOH . IA 7 HOH A 57 1357 119 HOH HOH . IA 7 HOH A 58 1358 163 HOH HOH . IA 7 HOH A 59 1359 13 HOH HOH . IA 7 HOH A 60 1360 10 HOH HOH . IA 7 HOH A 61 1361 149 HOH HOH . IA 7 HOH A 62 1362 41 HOH HOH . IA 7 HOH A 63 1363 116 HOH HOH . IA 7 HOH A 64 1364 47 HOH HOH . IA 7 HOH A 65 1365 16 HOH HOH . IA 7 HOH A 66 1366 122 HOH HOH . IA 7 HOH A 67 1367 103 HOH HOH . IA 7 HOH A 68 1368 88 HOH HOH . IA 7 HOH A 69 1369 46 HOH HOH . IA 7 HOH A 70 1370 58 HOH HOH . IA 7 HOH A 71 1371 56 HOH HOH . IA 7 HOH A 72 1372 5 HOH HOH . IA 7 HOH A 73 1373 50 HOH HOH . IA 7 HOH A 74 1374 1 HOH HOH . IA 7 HOH A 75 1375 32 HOH HOH . IA 7 HOH A 76 1376 42 HOH HOH . IA 7 HOH A 77 1377 14 HOH HOH . IA 7 HOH A 78 1378 95 HOH HOH . IA 7 HOH A 79 1379 173 HOH HOH . IA 7 HOH A 80 1380 24 HOH HOH . IA 7 HOH A 81 1381 35 HOH HOH . IA 7 HOH A 82 1382 68 HOH HOH . IA 7 HOH A 83 1383 45 HOH HOH . IA 7 HOH A 84 1384 26 HOH HOH . IA 7 HOH A 85 1385 65 HOH HOH . IA 7 HOH A 86 1386 97 HOH HOH . IA 7 HOH A 87 1387 141 HOH HOH . IA 7 HOH A 88 1388 146 HOH HOH . IA 7 HOH A 89 1389 38 HOH HOH . IA 7 HOH A 90 1390 20 HOH HOH . IA 7 HOH A 91 1391 34 HOH HOH . IA 7 HOH A 92 1392 39 HOH HOH . IA 7 HOH A 93 1393 40 HOH HOH . IA 7 HOH A 94 1394 182 HOH HOH . IA 7 HOH A 95 1395 54 HOH HOH . IA 7 HOH A 96 1396 99 HOH HOH . IA 7 HOH A 97 1397 124 HOH HOH . IA 7 HOH A 98 1398 142 HOH HOH . IA 7 HOH A 99 1399 59 HOH HOH . IA 7 HOH A 100 1400 107 HOH HOH . IA 7 HOH A 101 1401 62 HOH HOH . IA 7 HOH A 102 1402 112 HOH HOH . IA 7 HOH A 103 1403 187 HOH HOH . IA 7 HOH A 104 1404 138 HOH HOH . IA 7 HOH A 105 1405 193 HOH HOH . IA 7 HOH A 106 1406 22 HOH HOH . IA 7 HOH A 107 1407 8 HOH HOH . IA 7 HOH A 108 1408 131 HOH HOH . IA 7 HOH A 109 1409 92 HOH HOH . IA 7 HOH A 110 1410 7 HOH HOH . IA 7 HOH A 111 1411 98 HOH HOH . IA 7 HOH A 112 1412 79 HOH HOH . IA 7 HOH A 113 1413 30 HOH HOH . IA 7 HOH A 114 1414 166 HOH HOH . IA 7 HOH A 115 1415 113 HOH HOH . IA 7 HOH A 116 1416 15 HOH HOH . IA 7 HOH A 117 1417 185 HOH HOH . IA 7 HOH A 118 1418 108 HOH HOH . IA 7 HOH A 119 1419 170 HOH HOH . IA 7 HOH A 120 1420 106 HOH HOH . IA 7 HOH A 121 1421 104 HOH HOH . IA 7 HOH A 122 1422 70 HOH HOH . IA 7 HOH A 123 1423 153 HOH HOH . IA 7 HOH A 124 1424 57 HOH HOH . IA 7 HOH A 125 1425 105 HOH HOH . IA 7 HOH A 126 1426 53 HOH HOH . IA 7 HOH A 127 1427 162 HOH HOH . IA 7 HOH A 128 1428 129 HOH HOH . IA 7 HOH A 129 1429 164 HOH HOH . IA 7 HOH A 130 1430 114 HOH HOH . IA 7 HOH A 131 1431 159 HOH HOH . IA 7 HOH A 132 1432 93 HOH HOH . IA 7 HOH A 133 1433 147 HOH HOH . IA 7 HOH A 134 1434 179 HOH HOH . IA 7 HOH A 135 1435 140 HOH HOH . IA 7 HOH A 136 1436 167 HOH HOH . IA 7 HOH A 137 1437 80 HOH HOH . IA 7 HOH A 138 1438 72 HOH HOH . IA 7 HOH A 139 1439 183 HOH HOH . IA 7 HOH A 140 1440 128 HOH HOH . IA 7 HOH A 141 1441 117 HOH HOH . IA 7 HOH A 142 1442 55 HOH HOH . IA 7 HOH A 143 1443 188 HOH HOH . IA 7 HOH A 144 1444 160 HOH HOH . IA 7 HOH A 145 1445 123 HOH HOH . IA 7 HOH A 146 1446 125 HOH HOH . IA 7 HOH A 147 1447 158 HOH HOH . IA 7 HOH A 148 1448 115 HOH HOH . IA 7 HOH A 149 1449 94 HOH HOH . IA 7 HOH A 150 1450 82 HOH HOH . IA 7 HOH A 151 1451 133 HOH HOH . IA 7 HOH A 152 1452 84 HOH HOH . IA 7 HOH A 153 1453 86 HOH HOH . IA 7 HOH A 154 1454 151 HOH HOH . IA 7 HOH A 155 1455 66 HOH HOH . IA 7 HOH A 156 1456 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -23.509 _atom_site.Cartn_y -8.331 _atom_site.Cartn_z 16.493 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.2 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #