data_5OM5
#
_model_server_result.job_id            jWGrjq00VJUBXlGsxyQilw 
_model_server_result.datetime_utc      '2024-11-28 03:26:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5om5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5OM5 
#
_exptl.entry_id    5OM5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5OM5 
_cell.length_a            84.732 
_cell.length_b            84.732 
_cell.length_c            97.152 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OM5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5OM5 
_atom_sites.fract_transf_matrix[1][1]    0.011802 
_atom_sites.fract_transf_matrix[1][2]    0.006814 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013628 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010293 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 501 1 EDO EDO . 
D 3 EDO A 1 502 2 EDO EDO . 
E 3 EDO A 1 503 3 EDO EDO . 
F 4 CL A 1 504 1 CL CL . 
G 5 HOH A 1 601 85 HOH HOH . 
G 5 HOH A 2 602 288 HOH HOH . 
G 5 HOH A 3 603 156 HOH HOH . 
G 5 HOH A 4 604 256 HOH HOH . 
G 5 HOH A 5 605 283 HOH HOH . 
G 5 HOH A 6 606 79 HOH HOH . 
G 5 HOH A 7 607 189 HOH HOH . 
G 5 HOH A 8 608 216 HOH HOH . 
G 5 HOH A 9 609 91 HOH HOH . 
G 5 HOH A 10 610 101 HOH HOH . 
G 5 HOH A 11 611 316 HOH HOH . 
G 5 HOH A 12 612 112 HOH HOH . 
G 5 HOH A 13 613 142 HOH HOH . 
G 5 HOH A 14 614 113 HOH HOH . 
G 5 HOH A 15 615 37 HOH HOH . 
G 5 HOH A 16 616 124 HOH HOH . 
G 5 HOH A 17 617 314 HOH HOH . 
G 5 HOH A 18 618 96 HOH HOH . 
G 5 HOH A 19 619 103 HOH HOH . 
G 5 HOH A 20 620 244 HOH HOH . 
G 5 HOH A 21 621 293 HOH HOH . 
G 5 HOH A 22 622 164 HOH HOH . 
G 5 HOH A 23 623 59 HOH HOH . 
G 5 HOH A 24 624 221 HOH HOH . 
G 5 HOH A 25 625 22 HOH HOH . 
G 5 HOH A 26 626 292 HOH HOH . 
G 5 HOH A 27 627 42 HOH HOH . 
G 5 HOH A 28 628 340 HOH HOH . 
G 5 HOH A 29 629 214 HOH HOH . 
G 5 HOH A 30 630 127 HOH HOH . 
G 5 HOH A 31 631 34 HOH HOH . 
G 5 HOH A 32 632 76 HOH HOH . 
G 5 HOH A 33 633 154 HOH HOH . 
G 5 HOH A 34 634 268 HOH HOH . 
G 5 HOH A 35 635 202 HOH HOH . 
G 5 HOH A 36 636 206 HOH HOH . 
G 5 HOH A 37 637 2 HOH HOH . 
G 5 HOH A 38 638 108 HOH HOH . 
G 5 HOH A 39 639 176 HOH HOH . 
G 5 HOH A 40 640 3 HOH HOH . 
G 5 HOH A 41 641 170 HOH HOH . 
G 5 HOH A 42 642 13 HOH HOH . 
G 5 HOH A 43 643 8 HOH HOH . 
G 5 HOH A 44 644 70 HOH HOH . 
G 5 HOH A 45 645 267 HOH HOH . 
G 5 HOH A 46 646 67 HOH HOH . 
G 5 HOH A 47 647 10 HOH HOH . 
G 5 HOH A 48 648 80 HOH HOH . 
G 5 HOH A 49 649 77 HOH HOH . 
G 5 HOH A 50 650 166 HOH HOH . 
G 5 HOH A 51 651 58 HOH HOH . 
G 5 HOH A 52 652 6 HOH HOH . 
G 5 HOH A 53 653 153 HOH HOH . 
G 5 HOH A 54 654 38 HOH HOH . 
G 5 HOH A 55 655 20 HOH HOH . 
G 5 HOH A 56 656 191 HOH HOH . 
G 5 HOH A 57 657 183 HOH HOH . 
G 5 HOH A 58 658 237 HOH HOH . 
G 5 HOH A 59 659 131 HOH HOH . 
G 5 HOH A 60 660 333 HOH HOH . 
G 5 HOH A 61 661 68 HOH HOH . 
G 5 HOH A 62 662 295 HOH HOH . 
G 5 HOH A 63 663 140 HOH HOH . 
G 5 HOH A 64 664 17 HOH HOH . 
G 5 HOH A 65 665 203 HOH HOH . 
G 5 HOH A 66 666 81 HOH HOH . 
G 5 HOH A 67 667 115 HOH HOH . 
G 5 HOH A 68 668 4 HOH HOH . 
G 5 HOH A 69 669 30 HOH HOH . 
G 5 HOH A 70 670 51 HOH HOH . 
G 5 HOH A 71 671 188 HOH HOH . 
G 5 HOH A 72 672 254 HOH HOH . 
G 5 HOH A 73 673 162 HOH HOH . 
G 5 HOH A 74 674 236 HOH HOH . 
G 5 HOH A 75 675 245 HOH HOH . 
G 5 HOH A 76 676 49 HOH HOH . 
G 5 HOH A 77 677 44 HOH HOH . 
G 5 HOH A 78 678 139 HOH HOH . 
G 5 HOH A 79 679 46 HOH HOH . 
G 5 HOH A 80 680 133 HOH HOH . 
G 5 HOH A 81 681 105 HOH HOH . 
G 5 HOH A 82 682 337 HOH HOH . 
G 5 HOH A 83 683 78 HOH HOH . 
G 5 HOH A 84 684 95 HOH HOH . 
G 5 HOH A 85 685 323 HOH HOH . 
G 5 HOH A 86 686 7 HOH HOH . 
G 5 HOH A 87 687 14 HOH HOH . 
G 5 HOH A 88 688 195 HOH HOH . 
G 5 HOH A 89 689 294 HOH HOH . 
G 5 HOH A 90 690 276 HOH HOH . 
G 5 HOH A 91 691 300 HOH HOH . 
G 5 HOH A 92 692 61 HOH HOH . 
G 5 HOH A 93 693 5 HOH HOH . 
G 5 HOH A 94 694 328 HOH HOH . 
G 5 HOH A 95 695 47 HOH HOH . 
G 5 HOH A 96 696 150 HOH HOH . 
G 5 HOH A 97 697 12 HOH HOH . 
G 5 HOH A 98 698 97 HOH HOH . 
G 5 HOH A 99 699 89 HOH HOH . 
G 5 HOH A 100 700 274 HOH HOH . 
G 5 HOH A 101 701 169 HOH HOH . 
G 5 HOH A 102 702 55 HOH HOH . 
G 5 HOH A 103 703 296 HOH HOH . 
G 5 HOH A 104 704 19 HOH HOH . 
G 5 HOH A 105 705 82 HOH HOH . 
G 5 HOH A 106 706 339 HOH HOH . 
G 5 HOH A 107 707 110 HOH HOH . 
G 5 HOH A 108 708 52 HOH HOH . 
G 5 HOH A 109 709 258 HOH HOH . 
G 5 HOH A 110 710 134 HOH HOH . 
G 5 HOH A 111 711 116 HOH HOH . 
G 5 HOH A 112 712 307 HOH HOH . 
G 5 HOH A 113 713 204 HOH HOH . 
G 5 HOH A 114 714 321 HOH HOH . 
G 5 HOH A 115 715 261 HOH HOH . 
G 5 HOH A 116 716 1 HOH HOH . 
G 5 HOH A 117 717 130 HOH HOH . 
G 5 HOH A 118 718 73 HOH HOH . 
G 5 HOH A 119 719 201 HOH HOH . 
G 5 HOH A 120 720 28 HOH HOH . 
G 5 HOH A 121 721 27 HOH HOH . 
G 5 HOH A 122 722 114 HOH HOH . 
G 5 HOH A 123 723 160 HOH HOH . 
G 5 HOH A 124 724 104 HOH HOH . 
G 5 HOH A 125 725 25 HOH HOH . 
G 5 HOH A 126 726 151 HOH HOH . 
G 5 HOH A 127 727 223 HOH HOH . 
G 5 HOH A 128 728 92 HOH HOH . 
G 5 HOH A 129 729 262 HOH HOH . 
G 5 HOH A 130 730 43 HOH HOH . 
G 5 HOH A 131 731 281 HOH HOH . 
G 5 HOH A 132 732 329 HOH HOH . 
G 5 HOH A 133 733 177 HOH HOH . 
G 5 HOH A 134 734 185 HOH HOH . 
G 5 HOH A 135 735 71 HOH HOH . 
G 5 HOH A 136 736 111 HOH HOH . 
G 5 HOH A 137 737 65 HOH HOH . 
G 5 HOH A 138 738 50 HOH HOH . 
G 5 HOH A 139 739 75 HOH HOH . 
G 5 HOH A 140 740 24 HOH HOH . 
G 5 HOH A 141 741 200 HOH HOH . 
G 5 HOH A 142 742 175 HOH HOH . 
G 5 HOH A 143 743 84 HOH HOH . 
G 5 HOH A 144 744 88 HOH HOH . 
G 5 HOH A 145 745 135 HOH HOH . 
G 5 HOH A 146 746 193 HOH HOH . 
G 5 HOH A 147 747 57 HOH HOH . 
G 5 HOH A 148 748 255 HOH HOH . 
G 5 HOH A 149 749 15 HOH HOH . 
G 5 HOH A 150 750 31 HOH HOH . 
G 5 HOH A 151 751 138 HOH HOH . 
G 5 HOH A 152 752 149 HOH HOH . 
G 5 HOH A 153 753 54 HOH HOH . 
G 5 HOH A 154 754 62 HOH HOH . 
G 5 HOH A 155 755 330 HOH HOH . 
G 5 HOH A 156 756 165 HOH HOH . 
G 5 HOH A 157 757 157 HOH HOH . 
G 5 HOH A 158 758 86 HOH HOH . 
G 5 HOH A 159 759 137 HOH HOH . 
G 5 HOH A 160 760 63 HOH HOH . 
G 5 HOH A 161 761 309 HOH HOH . 
G 5 HOH A 162 762 121 HOH HOH . 
G 5 HOH A 163 763 207 HOH HOH . 
G 5 HOH A 164 764 56 HOH HOH . 
G 5 HOH A 165 765 212 HOH HOH . 
G 5 HOH A 166 766 290 HOH HOH . 
G 5 HOH A 167 767 211 HOH HOH . 
G 5 HOH A 168 768 26 HOH HOH . 
G 5 HOH A 169 769 280 HOH HOH . 
G 5 HOH A 170 770 198 HOH HOH . 
G 5 HOH A 171 771 45 HOH HOH . 
G 5 HOH A 172 772 40 HOH HOH . 
G 5 HOH A 173 773 260 HOH HOH . 
G 5 HOH A 174 774 87 HOH HOH . 
G 5 HOH A 175 775 29 HOH HOH . 
G 5 HOH A 176 776 32 HOH HOH . 
G 5 HOH A 177 777 289 HOH HOH . 
G 5 HOH A 178 778 342 HOH HOH . 
G 5 HOH A 179 779 331 HOH HOH . 
G 5 HOH A 180 780 109 HOH HOH . 
G 5 HOH A 181 781 341 HOH HOH . 
G 5 HOH A 182 782 320 HOH HOH . 
G 5 HOH A 183 783 270 HOH HOH . 
G 5 HOH A 184 784 39 HOH HOH . 
G 5 HOH A 185 785 16 HOH HOH . 
G 5 HOH A 186 786 180 HOH HOH . 
G 5 HOH A 187 787 192 HOH HOH . 
G 5 HOH A 188 788 146 HOH HOH . 
G 5 HOH A 189 789 72 HOH HOH . 
G 5 HOH A 190 790 208 HOH HOH . 
G 5 HOH A 191 791 326 HOH HOH . 
G 5 HOH A 192 792 302 HOH HOH . 
G 5 HOH A 193 793 66 HOH HOH . 
G 5 HOH A 194 794 181 HOH HOH . 
G 5 HOH A 195 795 178 HOH HOH . 
G 5 HOH A 196 796 305 HOH HOH . 
G 5 HOH A 197 797 228 HOH HOH . 
G 5 HOH A 198 798 285 HOH HOH . 
G 5 HOH A 199 799 83 HOH HOH . 
G 5 HOH A 200 800 291 HOH HOH . 
G 5 HOH A 201 801 213 HOH HOH . 
G 5 HOH A 202 802 168 HOH HOH . 
G 5 HOH A 203 803 210 HOH HOH . 
G 5 HOH A 204 804 74 HOH HOH . 
G 5 HOH A 205 805 344 HOH HOH . 
G 5 HOH A 206 806 334 HOH HOH . 
G 5 HOH A 207 807 184 HOH HOH . 
G 5 HOH A 208 808 304 HOH HOH . 
G 5 HOH A 209 809 122 HOH HOH . 
G 5 HOH A 210 810 21 HOH HOH . 
G 5 HOH A 211 811 240 HOH HOH . 
G 5 HOH A 212 812 119 HOH HOH . 
G 5 HOH A 213 813 345 HOH HOH . 
G 5 HOH A 214 814 322 HOH HOH . 
G 5 HOH A 215 815 336 HOH HOH . 
G 5 HOH A 216 816 298 HOH HOH . 
G 5 HOH A 217 817 182 HOH HOH . 
G 5 HOH A 218 818 90 HOH HOH . 
G 5 HOH A 219 819 217 HOH HOH . 
G 5 HOH A 220 820 259 HOH HOH . 
G 5 HOH A 221 821 196 HOH HOH . 
G 5 HOH A 222 822 94 HOH HOH . 
G 5 HOH A 223 823 99 HOH HOH . 
G 5 HOH A 224 824 230 HOH HOH . 
G 5 HOH A 225 825 41 HOH HOH . 
G 5 HOH A 226 826 299 HOH HOH . 
G 5 HOH A 227 827 343 HOH HOH . 
G 5 HOH A 228 828 102 HOH HOH . 
G 5 HOH A 229 829 272 HOH HOH . 
G 5 HOH A 230 830 174 HOH HOH . 
G 5 HOH A 231 831 107 HOH HOH . 
G 5 HOH A 232 832 231 HOH HOH . 
G 5 HOH A 233 833 297 HOH HOH . 
G 5 HOH A 234 834 128 HOH HOH . 
G 5 HOH A 235 835 248 HOH HOH . 
G 5 HOH A 236 836 123 HOH HOH . 
G 5 HOH A 237 837 277 HOH HOH . 
G 5 HOH A 238 838 187 HOH HOH . 
G 5 HOH A 239 839 93 HOH HOH . 
G 5 HOH A 240 840 64 HOH HOH . 
G 5 HOH A 241 841 257 HOH HOH . 
G 5 HOH A 242 842 117 HOH HOH . 
G 5 HOH A 243 843 132 HOH HOH . 
G 5 HOH A 244 844 106 HOH HOH . 
G 5 HOH A 245 845 346 HOH HOH . 
G 5 HOH A 246 846 69 HOH HOH . 
G 5 HOH A 247 847 100 HOH HOH . 
H 5 HOH B 1 501 23 HOH HOH . 
H 5 HOH B 2 502 225 HOH HOH . 
H 5 HOH B 3 503 9 HOH HOH . 
H 5 HOH B 4 504 36 HOH HOH . 
H 5 HOH B 5 505 310 HOH HOH . 
H 5 HOH B 6 506 35 HOH HOH . 
H 5 HOH B 7 507 18 HOH HOH . 
H 5 HOH B 8 508 197 HOH HOH . 
H 5 HOH B 9 509 161 HOH HOH . 
H 5 HOH B 10 510 239 HOH HOH . 
H 5 HOH B 11 511 335 HOH HOH . 
H 5 HOH B 12 512 278 HOH HOH . 
H 5 HOH B 13 513 205 HOH HOH . 
H 5 HOH B 14 514 171 HOH HOH . 
H 5 HOH B 15 515 327 HOH HOH . 
H 5 HOH B 16 516 312 HOH HOH . 
H 5 HOH B 17 517 143 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 3 52.314 9.663 1.006 1 25.57 ? C1 EDO 501 A 1 
HETATM 2 O O1 EDO . . . C 3 53.654 9.192 1.203 1 25.08 ? O1 EDO 501 A 1 
HETATM 3 C C2 EDO . . . C 3 51.762 8.93 -0.202 1 24.62 ? C2 EDO 501 A 1 
HETATM 4 O O2 EDO . . . C 3 52.558 9.207 -1.362 1 26.57 ? O2 EDO 501 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#