data_5OMG # _model_server_result.job_id B-jK3U_Z-mxICR-hwNCEOQ _model_server_result.datetime_utc '2025-01-23 17:24:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5omg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5OMG # _exptl.entry_id 5OMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OMG _cell.length_a 66.82 _cell.length_b 74.96 _cell.length_c 78.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 108 n n C1 C2 BOG sing 109 n n C1 O5 BOG sing 110 n n C1 H1 BOG sing 111 n n O1 C1' BOG sing 112 n n C2 O2 BOG sing 113 n n C2 C3 BOG sing 114 n n C2 H2 BOG sing 115 n n O2 HO2 BOG sing 116 n n C3 O3 BOG sing 117 n n C3 C4 BOG sing 118 n n C3 H3 BOG sing 119 n n O3 HO3 BOG sing 120 n n C4 O4 BOG sing 121 n n C4 C5 BOG sing 122 n n C4 H4 BOG sing 123 n n O4 HO4 BOG sing 124 n n C5 O5 BOG sing 125 n n C5 C6 BOG sing 126 n n C5 H5 BOG sing 127 n n C6 O6 BOG sing 128 n n C6 H61 BOG sing 129 n n C6 H62 BOG sing 130 n n O6 HO6 BOG sing 131 n n C1' C2' BOG sing 132 n n C1' "H1'1" BOG sing 133 n n C1' "H1'2" BOG sing 134 n n C2' C3' BOG sing 135 n n C2' "H2'1" BOG sing 136 n n C2' "H2'2" BOG sing 137 n n C3' C4' BOG sing 138 n n C3' "H3'1" BOG sing 139 n n C3' "H3'2" BOG sing 140 n n C4' C5' BOG sing 141 n n C4' "H4'1" BOG sing 142 n n C4' "H4'2" BOG sing 143 n n C5' C6' BOG sing 144 n n C5' "H5'1" BOG sing 145 n n C5' "H5'2" BOG sing 146 n n C6' C7' BOG sing 147 n n C6' "H6'1" BOG sing 148 n n C6' "H6'2" BOG sing 149 n n C7' C8' BOG sing 150 n n C7' "H7'1" BOG sing 151 n n C7' "H7'2" BOG sing 152 n n C8' "H8'1" BOG sing 153 n n C8' "H8'2" BOG sing 154 n n C8' "H8'3" BOG sing 155 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5OMG _atom_sites.fract_transf_matrix[1][1] 0.014966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 401 1 BOG BOG . C 3 9Y8 A 1 402 1 9Y8 DRG . D 4 HOH A 1 501 299 HOH HOH . D 4 HOH A 2 502 281 HOH HOH . D 4 HOH A 3 503 159 HOH HOH . D 4 HOH A 4 504 9 HOH HOH . D 4 HOH A 5 505 264 HOH HOH . D 4 HOH A 6 506 306 HOH HOH . D 4 HOH A 7 507 245 HOH HOH . D 4 HOH A 8 508 313 HOH HOH . D 4 HOH A 9 509 123 HOH HOH . D 4 HOH A 10 510 256 HOH HOH . D 4 HOH A 11 511 283 HOH HOH . D 4 HOH A 12 512 145 HOH HOH . D 4 HOH A 13 513 293 HOH HOH . D 4 HOH A 14 514 13 HOH HOH . D 4 HOH A 15 515 39 HOH HOH . D 4 HOH A 16 516 122 HOH HOH . D 4 HOH A 17 517 230 HOH HOH . D 4 HOH A 18 518 94 HOH HOH . D 4 HOH A 19 519 239 HOH HOH . D 4 HOH A 20 520 43 HOH HOH . D 4 HOH A 21 521 119 HOH HOH . D 4 HOH A 22 522 308 HOH HOH . D 4 HOH A 23 523 21 HOH HOH . D 4 HOH A 24 524 270 HOH HOH . D 4 HOH A 25 525 247 HOH HOH . D 4 HOH A 26 526 250 HOH HOH . D 4 HOH A 27 527 167 HOH HOH . D 4 HOH A 28 528 18 HOH HOH . D 4 HOH A 29 529 215 HOH HOH . D 4 HOH A 30 530 253 HOH HOH . D 4 HOH A 31 531 20 HOH HOH . D 4 HOH A 32 532 300 HOH HOH . D 4 HOH A 33 533 168 HOH HOH . D 4 HOH A 34 534 236 HOH HOH . D 4 HOH A 35 535 41 HOH HOH . D 4 HOH A 36 536 286 HOH HOH . D 4 HOH A 37 537 27 HOH HOH . D 4 HOH A 38 538 12 HOH HOH . D 4 HOH A 39 539 276 HOH HOH . D 4 HOH A 40 540 133 HOH HOH . D 4 HOH A 41 541 30 HOH HOH . D 4 HOH A 42 542 136 HOH HOH . D 4 HOH A 43 543 233 HOH HOH . D 4 HOH A 44 544 3 HOH HOH . D 4 HOH A 45 545 229 HOH HOH . D 4 HOH A 46 546 231 HOH HOH . D 4 HOH A 47 547 296 HOH HOH . D 4 HOH A 48 548 260 HOH HOH . D 4 HOH A 49 549 289 HOH HOH . D 4 HOH A 50 550 200 HOH HOH . D 4 HOH A 51 551 147 HOH HOH . D 4 HOH A 52 552 32 HOH HOH . D 4 HOH A 53 553 38 HOH HOH . D 4 HOH A 54 554 275 HOH HOH . D 4 HOH A 55 555 103 HOH HOH . D 4 HOH A 56 556 232 HOH HOH . D 4 HOH A 57 557 269 HOH HOH . D 4 HOH A 58 558 314 HOH HOH . D 4 HOH A 59 559 316 HOH HOH . D 4 HOH A 60 560 277 HOH HOH . D 4 HOH A 61 561 268 HOH HOH . D 4 HOH A 62 562 23 HOH HOH . D 4 HOH A 63 563 35 HOH HOH . D 4 HOH A 64 564 305 HOH HOH . D 4 HOH A 65 565 8 HOH HOH . D 4 HOH A 66 566 320 HOH HOH . D 4 HOH A 67 567 15 HOH HOH . D 4 HOH A 68 568 22 HOH HOH . D 4 HOH A 69 569 64 HOH HOH . D 4 HOH A 70 570 304 HOH HOH . D 4 HOH A 71 571 263 HOH HOH . D 4 HOH A 72 572 246 HOH HOH . D 4 HOH A 73 573 19 HOH HOH . D 4 HOH A 74 574 24 HOH HOH . D 4 HOH A 75 575 128 HOH HOH . D 4 HOH A 76 576 241 HOH HOH . D 4 HOH A 77 577 26 HOH HOH . D 4 HOH A 78 578 16 HOH HOH . D 4 HOH A 79 579 258 HOH HOH . D 4 HOH A 80 580 14 HOH HOH . D 4 HOH A 81 581 10 HOH HOH . D 4 HOH A 82 582 4 HOH HOH . D 4 HOH A 83 583 156 HOH HOH . D 4 HOH A 84 584 127 HOH HOH . D 4 HOH A 85 585 1 HOH HOH . D 4 HOH A 86 586 155 HOH HOH . D 4 HOH A 87 587 279 HOH HOH . D 4 HOH A 88 588 126 HOH HOH . D 4 HOH A 89 589 129 HOH HOH . D 4 HOH A 90 590 214 HOH HOH . D 4 HOH A 91 591 249 HOH HOH . D 4 HOH A 92 592 235 HOH HOH . D 4 HOH A 93 593 29 HOH HOH . D 4 HOH A 94 594 248 HOH HOH . D 4 HOH A 95 595 265 HOH HOH . D 4 HOH A 96 596 149 HOH HOH . D 4 HOH A 97 597 162 HOH HOH . D 4 HOH A 98 598 31 HOH HOH . D 4 HOH A 99 599 243 HOH HOH . D 4 HOH A 100 600 72 HOH HOH . D 4 HOH A 101 601 93 HOH HOH . D 4 HOH A 102 602 45 HOH HOH . D 4 HOH A 103 603 125 HOH HOH . D 4 HOH A 104 604 154 HOH HOH . D 4 HOH A 105 605 7 HOH HOH . D 4 HOH A 106 606 152 HOH HOH . D 4 HOH A 107 607 17 HOH HOH . D 4 HOH A 108 608 2 HOH HOH . D 4 HOH A 109 609 297 HOH HOH . D 4 HOH A 110 610 166 HOH HOH . D 4 HOH A 111 611 33 HOH HOH . D 4 HOH A 112 612 238 HOH HOH . D 4 HOH A 113 613 290 HOH HOH . D 4 HOH A 114 614 287 HOH HOH . D 4 HOH A 115 615 319 HOH HOH . D 4 HOH A 116 616 317 HOH HOH . D 4 HOH A 117 617 42 HOH HOH . D 4 HOH A 118 618 11 HOH HOH . D 4 HOH A 119 619 228 HOH HOH . D 4 HOH A 120 620 237 HOH HOH . D 4 HOH A 121 621 257 HOH HOH . D 4 HOH A 122 622 44 HOH HOH . D 4 HOH A 123 623 5 HOH HOH . D 4 HOH A 124 624 302 HOH HOH . D 4 HOH A 125 625 294 HOH HOH . D 4 HOH A 126 626 298 HOH HOH . D 4 HOH A 127 627 292 HOH HOH . D 4 HOH A 128 628 266 HOH HOH . D 4 HOH A 129 629 139 HOH HOH . D 4 HOH A 130 630 160 HOH HOH . D 4 HOH A 131 631 262 HOH HOH . D 4 HOH A 132 632 36 HOH HOH . D 4 HOH A 133 633 144 HOH HOH . D 4 HOH A 134 634 255 HOH HOH . D 4 HOH A 135 635 242 HOH HOH . D 4 HOH A 136 636 301 HOH HOH . D 4 HOH A 137 637 278 HOH HOH . D 4 HOH A 138 638 6 HOH HOH . D 4 HOH A 139 639 271 HOH HOH . D 4 HOH A 140 640 77 HOH HOH . D 4 HOH A 141 641 37 HOH HOH . D 4 HOH A 142 642 151 HOH HOH . D 4 HOH A 143 643 234 HOH HOH . D 4 HOH A 144 644 285 HOH HOH . D 4 HOH A 145 645 146 HOH HOH . D 4 HOH A 146 646 267 HOH HOH . D 4 HOH A 147 647 311 HOH HOH . D 4 HOH A 148 648 181 HOH HOH . D 4 HOH A 149 649 58 HOH HOH . D 4 HOH A 150 650 295 HOH HOH . D 4 HOH A 151 651 315 HOH HOH . D 4 HOH A 152 652 284 HOH HOH . D 4 HOH A 153 653 303 HOH HOH . D 4 HOH A 154 654 291 HOH HOH . D 4 HOH A 155 655 165 HOH HOH . D 4 HOH A 156 656 124 HOH HOH . D 4 HOH A 157 657 99 HOH HOH . D 4 HOH A 158 658 142 HOH HOH . D 4 HOH A 159 659 261 HOH HOH . D 4 HOH A 160 660 213 HOH HOH . D 4 HOH A 161 661 40 HOH HOH . D 4 HOH A 162 662 164 HOH HOH . D 4 HOH A 163 663 163 HOH HOH . D 4 HOH A 164 664 161 HOH HOH . D 4 HOH A 165 665 280 HOH HOH . D 4 HOH A 166 666 25 HOH HOH . D 4 HOH A 167 667 312 HOH HOH . D 4 HOH A 168 668 309 HOH HOH . D 4 HOH A 169 669 150 HOH HOH . D 4 HOH A 170 670 223 HOH HOH . D 4 HOH A 171 671 318 HOH HOH . D 4 HOH A 172 672 288 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 23.907 -13.105 -8.923 1 31.85 ? C1 BOG 401 A 1 HETATM 2 O O1 BOG . . . B 2 24.127 -12.441 -10.184 1 33.14 ? O1 BOG 401 A 1 HETATM 3 C C2 BOG . . . B 2 24.747 -12.582 -7.735 1 33.02 ? C2 BOG 401 A 1 HETATM 4 O O2 BOG . . . B 2 26.152 -12.774 -7.957 1 30.25 ? O2 BOG 401 A 1 HETATM 5 C C3 BOG . . . B 2 24.332 -13.328 -6.463 1 32.51 ? C3 BOG 401 A 1 HETATM 6 O O3 BOG . . . B 2 25.06 -12.739 -5.342 1 30.95 ? O3 BOG 401 A 1 HETATM 7 C C4 BOG . . . B 2 22.843 -13.061 -6.224 1 31.37 ? C4 BOG 401 A 1 HETATM 8 O O4 BOG . . . B 2 22.321 -13.811 -5.138 1 34.99 ? O4 BOG 401 A 1 HETATM 9 C C5 BOG . . . B 2 21.944 -13.366 -7.407 1 31.9 ? C5 BOG 401 A 1 HETATM 10 O O5 BOG . . . B 2 22.493 -12.815 -8.656 1 33.44 ? O5 BOG 401 A 1 HETATM 11 C C6 BOG . . . B 2 20.559 -12.705 -7.226 1 27.85 ? C6 BOG 401 A 1 HETATM 12 O O6 BOG . . . B 2 19.854 -13.442 -8.23 1 35.88 ? O6 BOG 401 A 1 HETATM 13 C C1' BOG . . . B 2 24.814 -13.347 -11.036 1 37.4 ? C1' BOG 401 A 1 HETATM 14 C C2' BOG . . . B 2 24.061 -14.014 -12.129 1 36.31 ? C2' BOG 401 A 1 HETATM 15 C C3' BOG . . . B 2 25.227 -14.514 -12.978 1 36.1 ? C3' BOG 401 A 1 HETATM 16 C C4' BOG . . . B 2 24.922 -15.747 -13.798 1 34.86 ? C4' BOG 401 A 1 HETATM 17 C C5' BOG . . . B 2 25.705 -15.763 -15.044 1 37.07 ? C5' BOG 401 A 1 HETATM 18 C C6' BOG . . . B 2 25.436 -17.059 -15.826 1 40.67 ? C6' BOG 401 A 1 HETATM 19 C C7' BOG . . . B 2 25.976 -16.943 -17.202 1 42.82 ? C7' BOG 401 A 1 HETATM 20 C C8' BOG . . . B 2 26.577 -18.292 -17.672 1 47 ? C8' BOG 401 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #