data_5OMO # _model_server_result.job_id 1uE8RTXJ5dz1XFURjzbH9w _model_server_result.datetime_utc '2024-11-28 23:34:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5omo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":805}' # _entry.id 5OMO # _exptl.entry_id 5OMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OMO _cell.length_a 64.96 _cell.length_b 125.08 _cell.length_c 223.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,O 1 1 B,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 M N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5OMO _atom_sites.fract_transf_matrix[1][1] 0.015394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 801 2 SO4 SO4 . D 2 SO4 A 1 802 4 SO4 SO4 . E 2 SO4 A 1 803 5 SO4 SO4 . F 3 GOL A 1 804 1 GOL GOL . G 3 GOL A 1 805 3 GOL GOL . H 4 HSC A 1 806 300 HSC HSC . I 5 ZOZ A 1 807 1 ZOZ ZOZ . J 2 SO4 B 1 801 1 SO4 SO4 . K 2 SO4 B 1 802 3 SO4 SO4 . L 2 SO4 B 1 803 6 SO4 SO4 . M 3 GOL B 1 804 2 GOL GOL . N 4 HSC B 1 805 300 HSC HSC . O 6 HOH A 1 901 107 HOH HOH . O 6 HOH A 2 902 94 HOH HOH . O 6 HOH A 3 903 129 HOH HOH . O 6 HOH A 4 904 43 HOH HOH . O 6 HOH A 5 905 103 HOH HOH . O 6 HOH A 6 906 64 HOH HOH . O 6 HOH A 7 907 243 HOH HOH . O 6 HOH A 8 908 201 HOH HOH . O 6 HOH A 9 909 49 HOH HOH . O 6 HOH A 10 910 3 HOH HOH . O 6 HOH A 11 911 32 HOH HOH . O 6 HOH A 12 912 34 HOH HOH . O 6 HOH A 13 913 112 HOH HOH . O 6 HOH A 14 914 17 HOH HOH . O 6 HOH A 15 915 15 HOH HOH . O 6 HOH A 16 916 226 HOH HOH . O 6 HOH A 17 917 101 HOH HOH . O 6 HOH A 18 918 157 HOH HOH . O 6 HOH A 19 919 71 HOH HOH . O 6 HOH A 20 920 147 HOH HOH . O 6 HOH A 21 921 176 HOH HOH . O 6 HOH A 22 922 149 HOH HOH . O 6 HOH A 23 923 92 HOH HOH . O 6 HOH A 24 924 133 HOH HOH . O 6 HOH A 25 925 187 HOH HOH . O 6 HOH A 26 926 66 HOH HOH . O 6 HOH A 27 927 124 HOH HOH . O 6 HOH A 28 928 177 HOH HOH . O 6 HOH A 29 929 215 HOH HOH . O 6 HOH A 30 930 118 HOH HOH . O 6 HOH A 31 931 82 HOH HOH . O 6 HOH A 32 932 203 HOH HOH . O 6 HOH A 33 933 264 HOH HOH . O 6 HOH A 34 934 84 HOH HOH . O 6 HOH A 35 935 87 HOH HOH . O 6 HOH A 36 936 40 HOH HOH . O 6 HOH A 37 937 89 HOH HOH . O 6 HOH A 38 938 151 HOH HOH . O 6 HOH A 39 939 116 HOH HOH . O 6 HOH A 40 940 190 HOH HOH . O 6 HOH A 41 941 148 HOH HOH . O 6 HOH A 42 942 213 HOH HOH . O 6 HOH A 43 943 108 HOH HOH . O 6 HOH A 44 944 65 HOH HOH . O 6 HOH A 45 945 97 HOH HOH . O 6 HOH A 46 946 56 HOH HOH . O 6 HOH A 47 947 127 HOH HOH . O 6 HOH A 48 948 140 HOH HOH . O 6 HOH A 49 949 90 HOH HOH . O 6 HOH A 50 950 105 HOH HOH . O 6 HOH A 51 951 128 HOH HOH . O 6 HOH A 52 952 195 HOH HOH . O 6 HOH A 53 953 125 HOH HOH . O 6 HOH A 54 954 10 HOH HOH . O 6 HOH A 55 955 171 HOH HOH . O 6 HOH A 56 956 142 HOH HOH . O 6 HOH A 57 957 188 HOH HOH . O 6 HOH A 58 958 146 HOH HOH . O 6 HOH A 59 959 7 HOH HOH . O 6 HOH A 60 960 63 HOH HOH . O 6 HOH A 61 961 73 HOH HOH . O 6 HOH A 62 962 31 HOH HOH . O 6 HOH A 63 963 91 HOH HOH . O 6 HOH A 64 964 242 HOH HOH . O 6 HOH A 65 965 117 HOH HOH . O 6 HOH A 66 966 62 HOH HOH . O 6 HOH A 67 967 14 HOH HOH . O 6 HOH A 68 968 168 HOH HOH . O 6 HOH A 69 969 274 HOH HOH . O 6 HOH A 70 970 100 HOH HOH . O 6 HOH A 71 971 58 HOH HOH . O 6 HOH A 72 972 131 HOH HOH . O 6 HOH A 73 973 145 HOH HOH . O 6 HOH A 74 974 18 HOH HOH . O 6 HOH A 75 975 61 HOH HOH . O 6 HOH A 76 976 281 HOH HOH . O 6 HOH A 77 977 80 HOH HOH . O 6 HOH A 78 978 13 HOH HOH . O 6 HOH A 79 979 183 HOH HOH . O 6 HOH A 80 980 138 HOH HOH . O 6 HOH A 81 981 136 HOH HOH . O 6 HOH A 82 982 173 HOH HOH . O 6 HOH A 83 983 160 HOH HOH . O 6 HOH A 84 984 45 HOH HOH . O 6 HOH A 85 985 25 HOH HOH . O 6 HOH A 86 986 35 HOH HOH . O 6 HOH A 87 987 209 HOH HOH . O 6 HOH A 88 988 72 HOH HOH . O 6 HOH A 89 989 81 HOH HOH . O 6 HOH A 90 990 96 HOH HOH . O 6 HOH A 91 991 16 HOH HOH . O 6 HOH A 92 992 53 HOH HOH . O 6 HOH A 93 993 162 HOH HOH . O 6 HOH A 94 994 42 HOH HOH . O 6 HOH A 95 995 126 HOH HOH . O 6 HOH A 96 996 113 HOH HOH . O 6 HOH A 97 997 268 HOH HOH . O 6 HOH A 98 998 270 HOH HOH . O 6 HOH A 99 999 88 HOH HOH . O 6 HOH A 100 1000 115 HOH HOH . O 6 HOH A 101 1001 120 HOH HOH . O 6 HOH A 102 1002 130 HOH HOH . O 6 HOH A 103 1003 227 HOH HOH . O 6 HOH A 104 1004 272 HOH HOH . O 6 HOH A 105 1005 38 HOH HOH . O 6 HOH A 106 1006 83 HOH HOH . O 6 HOH A 107 1007 95 HOH HOH . O 6 HOH A 108 1008 41 HOH HOH . O 6 HOH A 109 1009 186 HOH HOH . O 6 HOH A 110 1010 4 HOH HOH . O 6 HOH A 111 1011 141 HOH HOH . O 6 HOH A 112 1012 182 HOH HOH . O 6 HOH A 113 1013 143 HOH HOH . O 6 HOH A 114 1014 139 HOH HOH . O 6 HOH A 115 1015 22 HOH HOH . O 6 HOH A 116 1016 30 HOH HOH . O 6 HOH A 117 1017 109 HOH HOH . O 6 HOH A 118 1018 119 HOH HOH . O 6 HOH A 119 1019 271 HOH HOH . O 6 HOH A 120 1020 79 HOH HOH . O 6 HOH A 121 1021 153 HOH HOH . O 6 HOH A 122 1022 102 HOH HOH . O 6 HOH A 123 1023 57 HOH HOH . O 6 HOH A 124 1024 192 HOH HOH . O 6 HOH A 125 1025 169 HOH HOH . O 6 HOH A 126 1026 121 HOH HOH . O 6 HOH A 127 1027 98 HOH HOH . O 6 HOH A 128 1028 266 HOH HOH . O 6 HOH A 129 1029 36 HOH HOH . O 6 HOH A 130 1030 154 HOH HOH . O 6 HOH A 131 1031 196 HOH HOH . O 6 HOH A 132 1032 255 HOH HOH . O 6 HOH A 133 1033 46 HOH HOH . O 6 HOH A 134 1034 210 HOH HOH . O 6 HOH A 135 1035 123 HOH HOH . O 6 HOH A 136 1036 282 HOH HOH . O 6 HOH A 137 1037 1 HOH HOH . O 6 HOH A 138 1038 181 HOH HOH . O 6 HOH A 139 1039 161 HOH HOH . O 6 HOH A 140 1040 19 HOH HOH . O 6 HOH A 141 1041 47 HOH HOH . O 6 HOH A 142 1042 229 HOH HOH . O 6 HOH A 143 1043 155 HOH HOH . O 6 HOH A 144 1044 251 HOH HOH . O 6 HOH A 145 1045 249 HOH HOH . O 6 HOH A 146 1046 180 HOH HOH . O 6 HOH A 147 1047 68 HOH HOH . O 6 HOH A 148 1048 212 HOH HOH . O 6 HOH A 149 1049 189 HOH HOH . O 6 HOH A 150 1050 44 HOH HOH . O 6 HOH A 151 1051 55 HOH HOH . O 6 HOH A 152 1052 204 HOH HOH . O 6 HOH A 153 1053 211 HOH HOH . O 6 HOH A 154 1054 247 HOH HOH . O 6 HOH A 155 1055 78 HOH HOH . O 6 HOH A 156 1056 256 HOH HOH . O 6 HOH A 157 1057 184 HOH HOH . O 6 HOH A 158 1058 262 HOH HOH . O 6 HOH A 159 1059 267 HOH HOH . O 6 HOH A 160 1060 252 HOH HOH . O 6 HOH A 161 1061 280 HOH HOH . O 6 HOH A 162 1062 60 HOH HOH . O 6 HOH A 163 1063 279 HOH HOH . O 6 HOH A 164 1064 165 HOH HOH . O 6 HOH A 165 1065 236 HOH HOH . O 6 HOH A 166 1066 214 HOH HOH . O 6 HOH A 167 1067 265 HOH HOH . O 6 HOH A 168 1068 269 HOH HOH . O 6 HOH A 169 1069 132 HOH HOH . O 6 HOH A 170 1070 111 HOH HOH . O 6 HOH A 171 1071 114 HOH HOH . O 6 HOH A 172 1072 216 HOH HOH . O 6 HOH A 173 1073 259 HOH HOH . O 6 HOH A 174 1074 159 HOH HOH . O 6 HOH A 175 1075 233 HOH HOH . O 6 HOH A 176 1076 278 HOH HOH . O 6 HOH A 177 1077 248 HOH HOH . O 6 HOH A 178 1078 232 HOH HOH . O 6 HOH A 179 1079 224 HOH HOH . O 6 HOH A 180 1080 235 HOH HOH . O 6 HOH A 181 1081 156 HOH HOH . O 6 HOH A 182 1082 241 HOH HOH . O 6 HOH A 183 1083 158 HOH HOH . O 6 HOH A 184 1084 277 HOH HOH . O 6 HOH A 185 1085 254 HOH HOH . O 6 HOH A 186 1086 217 HOH HOH . O 6 HOH A 187 1087 223 HOH HOH . O 6 HOH A 188 1088 221 HOH HOH . O 6 HOH A 189 1089 240 HOH HOH . O 6 HOH A 190 1090 205 HOH HOH . P 6 HOH B 1 901 86 HOH HOH . P 6 HOH B 2 902 178 HOH HOH . P 6 HOH B 3 903 26 HOH HOH . P 6 HOH B 4 904 152 HOH HOH . P 6 HOH B 5 905 6 HOH HOH . P 6 HOH B 6 906 51 HOH HOH . P 6 HOH B 7 907 48 HOH HOH . P 6 HOH B 8 908 245 HOH HOH . P 6 HOH B 9 909 70 HOH HOH . P 6 HOH B 10 910 260 HOH HOH . P 6 HOH B 11 911 54 HOH HOH . P 6 HOH B 12 912 166 HOH HOH . P 6 HOH B 13 913 104 HOH HOH . P 6 HOH B 14 914 74 HOH HOH . P 6 HOH B 15 915 24 HOH HOH . P 6 HOH B 16 916 163 HOH HOH . P 6 HOH B 17 917 244 HOH HOH . P 6 HOH B 18 918 167 HOH HOH . P 6 HOH B 19 919 52 HOH HOH . P 6 HOH B 20 920 134 HOH HOH . P 6 HOH B 21 921 200 HOH HOH . P 6 HOH B 22 922 29 HOH HOH . P 6 HOH B 23 923 246 HOH HOH . P 6 HOH B 24 924 21 HOH HOH . P 6 HOH B 25 925 230 HOH HOH . P 6 HOH B 26 926 135 HOH HOH . P 6 HOH B 27 927 77 HOH HOH . P 6 HOH B 28 928 250 HOH HOH . P 6 HOH B 29 929 273 HOH HOH . P 6 HOH B 30 930 234 HOH HOH . P 6 HOH B 31 931 75 HOH HOH . P 6 HOH B 32 932 33 HOH HOH . P 6 HOH B 33 933 9 HOH HOH . P 6 HOH B 34 934 99 HOH HOH . P 6 HOH B 35 935 67 HOH HOH . P 6 HOH B 36 936 50 HOH HOH . P 6 HOH B 37 937 39 HOH HOH . P 6 HOH B 38 938 191 HOH HOH . P 6 HOH B 39 939 11 HOH HOH . P 6 HOH B 40 940 199 HOH HOH . P 6 HOH B 41 941 137 HOH HOH . P 6 HOH B 42 942 27 HOH HOH . P 6 HOH B 43 943 37 HOH HOH . P 6 HOH B 44 944 8 HOH HOH . P 6 HOH B 45 945 59 HOH HOH . P 6 HOH B 46 946 253 HOH HOH . P 6 HOH B 47 947 198 HOH HOH . P 6 HOH B 48 948 69 HOH HOH . P 6 HOH B 49 949 122 HOH HOH . P 6 HOH B 50 950 175 HOH HOH . P 6 HOH B 51 951 174 HOH HOH . P 6 HOH B 52 952 193 HOH HOH . P 6 HOH B 53 953 202 HOH HOH . P 6 HOH B 54 954 110 HOH HOH . P 6 HOH B 55 955 275 HOH HOH . P 6 HOH B 56 956 28 HOH HOH . P 6 HOH B 57 957 12 HOH HOH . P 6 HOH B 58 958 93 HOH HOH . P 6 HOH B 59 959 5 HOH HOH . P 6 HOH B 60 960 179 HOH HOH . P 6 HOH B 61 961 20 HOH HOH . P 6 HOH B 62 962 144 HOH HOH . P 6 HOH B 63 963 23 HOH HOH . P 6 HOH B 64 964 261 HOH HOH . P 6 HOH B 65 965 206 HOH HOH . P 6 HOH B 66 966 208 HOH HOH . P 6 HOH B 67 967 85 HOH HOH . P 6 HOH B 68 968 239 HOH HOH . P 6 HOH B 69 969 218 HOH HOH . P 6 HOH B 70 970 172 HOH HOH . P 6 HOH B 71 971 2 HOH HOH . P 6 HOH B 72 972 220 HOH HOH . P 6 HOH B 73 973 225 HOH HOH . P 6 HOH B 74 974 207 HOH HOH . P 6 HOH B 75 975 194 HOH HOH . P 6 HOH B 76 976 222 HOH HOH . P 6 HOH B 77 977 228 HOH HOH . P 6 HOH B 78 978 231 HOH HOH . P 6 HOH B 79 979 219 HOH HOH . P 6 HOH B 80 980 263 HOH HOH . P 6 HOH B 81 981 258 HOH HOH . P 6 HOH B 82 982 106 HOH HOH . P 6 HOH B 83 983 276 HOH HOH . P 6 HOH B 84 984 237 HOH HOH . P 6 HOH B 85 985 164 HOH HOH . P 6 HOH B 86 986 150 HOH HOH . P 6 HOH B 87 987 76 HOH HOH . P 6 HOH B 88 988 257 HOH HOH . P 6 HOH B 89 989 197 HOH HOH . P 6 HOH B 90 990 185 HOH HOH . P 6 HOH B 91 991 238 HOH HOH . P 6 HOH B 92 992 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 -54.536 30.086 -105.594 1 58.24 ? C1 GOL 805 A 1 HETATM 2 O O1 GOL . . . G 3 -53.221 29.634 -105.239 1 58.32 ? O1 GOL 805 A 1 HETATM 3 C C2 GOL . . . G 3 -55.652 29.643 -104.631 1 58.06 ? C2 GOL 805 A 1 HETATM 4 O O2 GOL . . . G 3 -56.703 29.062 -105.424 1 59.62 ? O2 GOL 805 A 1 HETATM 5 C C3 GOL . . . G 3 -55.251 28.69 -103.475 1 58.07 ? C3 GOL 805 A 1 HETATM 6 O O3 GOL . . . G 3 -55.415 27.282 -103.767 1 52.87 ? O3 GOL 805 A 1 # _model_server_stats.io_time_ms 135 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #