data_5OMQ # _model_server_result.job_id F9_-Hgk35U3LQ7cW0vKKhQ _model_server_result.datetime_utc '2024-12-04 06:08:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5omq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":801}' # _entry.id 5OMQ # _exptl.entry_id 5OMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OMQ _cell.length_a 66.793 _cell.length_b 93.678 _cell.length_c 158.205 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 404 A ASP 404 1_555 F MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc2 A OD1 ASP 404 A ASP 404 1_555 G MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc3 A OD1 ASP 404 A ASP 404 1_555 H MN MN . A MN 805 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.137 ? metalc ? metalc4 A O PHE 405 A PHE 405 1_555 H MN MN . A MN 805 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.064 ? metalc ? metalc5 A OD1 ASP 542 A ASP 542 1_555 F MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc6 A OD2 ASP 542 A ASP 542 1_555 H MN MN . A MN 805 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.232 ? metalc ? metalc7 A OE1 GLU 580 A GLU 580 1_555 G MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc8 F MG MG . A MG 803 1_555 I O2A DTP . A DTP 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc9 F MG MG . A MG 803 1_555 J O HOH . A HOH 951 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc10 F MG MG . A MG 803 1_555 J O HOH . A HOH 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc11 G MG MG . A MG 804 1_555 I O3G DTP . A DTP 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc12 G MG MG . A MG 804 1_555 J O HOH . A HOH 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc13 G MG MG . A MG 804 1_555 J O HOH . A HOH 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc14 G MG MG . A MG 804 1_555 J O HOH . A HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc15 H MN MN . A MN 805 1_555 I O3G DTP . A DTP 806 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc16 H MN MN . A MN 805 1_555 I O2B DTP . A DTP 806 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc17 H MN MN . A MN 805 1_555 I O2A DTP . A DTP 806 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.236 ? hydrog WATSON-CRICK hydrog1 B N1 DG 5 T DG 5 1_555 C N3 DC 12 P DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 5 T DG 5 1_555 C O2 DC 12 P DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 5 T DG 5 1_555 C N4 DC 12 P DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 6 T DT 6 1_555 C N1 DA 11 P DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 6 T DT 6 1_555 C N6 DA 11 P DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DG 7 T DG 7 1_555 C N3 DC 10 P DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N2 DG 7 T DG 7 1_555 C O2 DC 10 P DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B O6 DG 7 T DG 7 1_555 C N4 DC 10 P DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N1 DG 8 T DG 8 1_555 C N3 DC 9 P DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N2 DG 8 T DG 8 1_555 C O2 DC 9 P DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O6 DG 8 T DG 8 1_555 C N4 DC 9 P DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DC 9 T DC 9 1_555 C N1 DG 8 P DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 DC 9 T DC 9 1_555 C O6 DG 8 P DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 DC 9 T DC 9 1_555 C N2 DG 8 P DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DC 10 T DC 10 1_555 C N1 DG 7 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N4 DC 10 T DC 10 1_555 C O6 DG 7 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O2 DC 10 T DC 10 1_555 C N2 DG 7 P DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N1 DG 11 T DG 11 1_555 C N3 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N2 DG 11 T DG 11 1_555 C O2 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O6 DG 11 T DG 11 1_555 C N4 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DT 12 T DT 12 1_555 C N1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B O4 DT 12 T DT 12 1_555 C N6 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N1 DG 13 T DG 13 1_555 C N3 DC 4 P DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N2 DG 13 T DG 13 1_555 C O2 DC 4 P DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O6 DG 13 T DG 13 1_555 C N4 DC 4 P DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N1 DG 14 T DG 14 1_555 C N3 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N2 DG 14 T DG 14 1_555 C O2 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B O6 DG 14 T DG 14 1_555 C N4 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N3 DT 15 T DT 15 1_555 C N1 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O4 DT 15 T DT 15 1_555 C N6 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 B N3 DC 16 T DC 16 1_555 C N1 DG 1 P DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 B N4 DC 16 T DC 16 1_555 C O6 DG 1 P DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 B O2 DC 16 T DC 16 1_555 C N2 DG 1 P DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 326 n n C1 C2 GOL sing 327 n n C1 H11 GOL sing 328 n n C1 H12 GOL sing 329 n n O1 HO1 GOL sing 330 n n C2 O2 GOL sing 331 n n C2 C3 GOL sing 332 n n C2 H2 GOL sing 333 n n O2 HO2 GOL sing 334 n n C3 O3 GOL sing 335 n n C3 H31 GOL sing 336 n n C3 H32 GOL sing 337 n n O3 HO3 GOL sing 338 n n # _atom_sites.entry_id 5OMQ _atom_sites.fract_transf_matrix[1][1] 0.014972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GOL A 1 801 1 GOL GOL . E 5 PGE A 1 802 1 PGE PGE . F 6 MG A 1 803 2 MG MG . G 6 MG A 1 804 3 MG MG . H 7 MN A 1 805 4 MN MN . I 8 DTP A 1 806 1 DTP DTP . J 9 HOH A 1 901 92 HOH HOH . J 9 HOH A 2 902 128 HOH HOH . J 9 HOH A 3 903 99 HOH HOH . J 9 HOH A 4 904 68 HOH HOH . J 9 HOH A 5 905 74 HOH HOH . J 9 HOH A 6 906 18 HOH HOH . J 9 HOH A 7 907 87 HOH HOH . J 9 HOH A 8 908 16 HOH HOH . J 9 HOH A 9 909 10 HOH HOH . J 9 HOH A 10 910 17 HOH HOH . J 9 HOH A 11 911 56 HOH HOH . J 9 HOH A 12 912 7 HOH HOH . J 9 HOH A 13 913 2 HOH HOH . J 9 HOH A 14 914 103 HOH HOH . J 9 HOH A 15 915 30 HOH HOH . J 9 HOH A 16 916 90 HOH HOH . J 9 HOH A 17 917 22 HOH HOH . J 9 HOH A 18 918 19 HOH HOH . J 9 HOH A 19 919 28 HOH HOH . J 9 HOH A 20 920 27 HOH HOH . J 9 HOH A 21 921 34 HOH HOH . J 9 HOH A 22 922 133 HOH HOH . J 9 HOH A 23 923 120 HOH HOH . J 9 HOH A 24 924 130 HOH HOH . J 9 HOH A 25 925 8 HOH HOH . J 9 HOH A 26 926 75 HOH HOH . J 9 HOH A 27 927 23 HOH HOH . J 9 HOH A 28 928 116 HOH HOH . J 9 HOH A 29 929 132 HOH HOH . J 9 HOH A 30 930 111 HOH HOH . J 9 HOH A 31 931 72 HOH HOH . J 9 HOH A 32 932 108 HOH HOH . J 9 HOH A 33 933 3 HOH HOH . J 9 HOH A 34 934 125 HOH HOH . J 9 HOH A 35 935 135 HOH HOH . J 9 HOH A 36 936 121 HOH HOH . J 9 HOH A 37 937 134 HOH HOH . J 9 HOH A 38 938 131 HOH HOH . J 9 HOH A 39 939 129 HOH HOH . J 9 HOH A 40 940 11 HOH HOH . J 9 HOH A 41 941 136 HOH HOH . J 9 HOH A 42 942 48 HOH HOH . J 9 HOH A 43 943 49 HOH HOH . J 9 HOH A 44 944 100 HOH HOH . J 9 HOH A 45 945 25 HOH HOH . J 9 HOH A 46 946 6 HOH HOH . J 9 HOH A 47 947 61 HOH HOH . J 9 HOH A 48 948 113 HOH HOH . J 9 HOH A 49 949 123 HOH HOH . J 9 HOH A 50 950 124 HOH HOH . J 9 HOH A 51 951 106 HOH HOH . J 9 HOH A 52 952 13 HOH HOH . J 9 HOH A 53 953 40 HOH HOH . J 9 HOH A 54 954 46 HOH HOH . J 9 HOH A 55 955 53 HOH HOH . J 9 HOH A 56 956 83 HOH HOH . J 9 HOH A 57 957 94 HOH HOH . J 9 HOH A 58 958 60 HOH HOH . J 9 HOH A 59 959 63 HOH HOH . J 9 HOH A 60 960 105 HOH HOH . J 9 HOH A 61 961 67 HOH HOH . J 9 HOH A 62 962 76 HOH HOH . J 9 HOH A 63 963 41 HOH HOH . J 9 HOH A 64 964 119 HOH HOH . J 9 HOH A 65 965 71 HOH HOH . J 9 HOH A 66 966 80 HOH HOH . J 9 HOH A 67 967 65 HOH HOH . J 9 HOH A 68 968 52 HOH HOH . J 9 HOH A 69 969 58 HOH HOH . J 9 HOH A 70 970 33 HOH HOH . J 9 HOH A 71 971 122 HOH HOH . J 9 HOH A 72 972 55 HOH HOH . J 9 HOH A 73 973 81 HOH HOH . K 9 HOH T 1 101 98 HOH HOH . K 9 HOH T 2 102 39 HOH HOH . K 9 HOH T 3 103 82 HOH HOH . K 9 HOH T 4 104 118 HOH HOH . K 9 HOH T 5 105 44 HOH HOH . K 9 HOH T 6 106 127 HOH HOH . K 9 HOH T 7 107 20 HOH HOH . K 9 HOH T 8 108 21 HOH HOH . K 9 HOH T 9 109 47 HOH HOH . K 9 HOH T 10 110 62 HOH HOH . L 9 HOH P 1 101 73 HOH HOH . L 9 HOH P 2 102 69 HOH HOH . L 9 HOH P 3 103 4 HOH HOH . L 9 HOH P 4 104 101 HOH HOH . L 9 HOH P 5 105 126 HOH HOH . L 9 HOH P 6 106 14 HOH HOH . L 9 HOH P 7 107 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 81.587 102.662 35.575 1 60.74 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . D 4 81.268 103.908 36.136 1 57.93 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . D 4 82.893 102.841 34.744 1 62.6 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . D 4 83.894 101.946 35.12 1 62.17 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . D 4 82.469 102.631 33.282 1 65.04 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . D 4 82.368 103.906 32.773 1 70.29 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #