data_5OMY # _model_server_result.job_id wD5qB4BpM3PnoLpCcwdigQ _model_server_result.datetime_utc '2024-10-13 01:20:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5omy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5OMY # _exptl.entry_id 5OMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.45 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(3-methylbut-2-enoxy)-5-propan-2-yl-7,8-dihydro-6~{H}-indeno[1,2-b]indole-9,10-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OMY _cell.length_a 72.698 _cell.length_b 72.698 _cell.length_c 132.887 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H25 N O3' _chem_comp.formula_weight 363.45 _chem_comp.id 9YE _chem_comp.mon_nstd_flag . _chem_comp.name 4-(3-methylbut-2-enoxy)-5-propan-2-yl-7,8-dihydro-6~{H}-indeno[1,2-b]indole-9,10-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C21 9YE sing 1 n n C21 C22 9YE sing 2 n n C21 C20 9YE doub 3 n n C20 C16 9YE sing 4 n n C16 O3 9YE sing 5 n n C18 C17 9YE sing 6 n n C19 C17 9YE sing 7 n n C17 N1 9YE sing 8 n n O3 C4 9YE sing 9 n n N1 C10 9YE sing 10 n y N1 C7 9YE sing 11 n y C4 C3 9YE doub 12 n y C4 C5 9YE sing 13 n y C12 C10 9YE sing 14 n n C12 C13 9YE sing 15 n n C3 C2 9YE sing 16 n y C10 C11 9YE doub 17 n y C7 C5 9YE sing 18 n n C7 C8 9YE doub 19 n y C13 C14 9YE sing 20 n n C5 C6 9YE doub 21 n y C2 C1 9YE doub 22 n y C11 C8 9YE sing 23 n y C11 C15 9YE sing 24 n n C8 C9 9YE sing 25 n n C6 C1 9YE sing 26 n y C6 C9 9YE sing 27 n n C14 C15 9YE sing 28 n n C15 O2 9YE doub 29 n n C9 O1 9YE doub 30 n n C1 H1 9YE sing 31 n n C12 H2 9YE sing 32 n n C12 H3 9YE sing 33 n n C13 H4 9YE sing 34 n n C13 H5 9YE sing 35 n n C14 H6 9YE sing 36 n n C14 H7 9YE sing 37 n n C16 H8 9YE sing 38 n n C16 H9 9YE sing 39 n n C17 H10 9YE sing 40 n n C18 H11 9YE sing 41 n n C18 H12 9YE sing 42 n n C18 H13 9YE sing 43 n n C19 H14 9YE sing 44 n n C19 H15 9YE sing 45 n n C19 H16 9YE sing 46 n n C2 H17 9YE sing 47 n n C20 H18 9YE sing 48 n n C22 H19 9YE sing 49 n n C22 H20 9YE sing 50 n n C22 H21 9YE sing 51 n n C23 H22 9YE sing 52 n n C23 H23 9YE sing 53 n n C23 H24 9YE sing 54 n n C3 H25 9YE sing 55 n n # _atom_sites.entry_id 5OMY _atom_sites.fract_transf_matrix[1][1] 0.013756 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9YE A 1 401 1 9YE N16 . C 3 CL A 1 402 2 CL CL . D 3 CL A 1 403 3 CL CL . E 3 CL A 1 404 4 CL CL . F 3 CL A 1 405 5 CL CL . G 3 CL A 1 406 6 CL CL . H 4 HOH A 1 501 115 HOH HOH . H 4 HOH A 2 502 33 HOH HOH . H 4 HOH A 3 503 56 HOH HOH . H 4 HOH A 4 504 1 HOH HOH . H 4 HOH A 5 505 6 HOH HOH . H 4 HOH A 6 506 116 HOH HOH . H 4 HOH A 7 507 24 HOH HOH . H 4 HOH A 8 508 70 HOH HOH . H 4 HOH A 9 509 109 HOH HOH . H 4 HOH A 10 510 35 HOH HOH . H 4 HOH A 11 511 49 HOH HOH . H 4 HOH A 12 512 58 HOH HOH . H 4 HOH A 13 513 96 HOH HOH . H 4 HOH A 14 514 55 HOH HOH . H 4 HOH A 15 515 94 HOH HOH . H 4 HOH A 16 516 74 HOH HOH . H 4 HOH A 17 517 100 HOH HOH . H 4 HOH A 18 518 93 HOH HOH . H 4 HOH A 19 519 101 HOH HOH . H 4 HOH A 20 520 72 HOH HOH . H 4 HOH A 21 521 52 HOH HOH . H 4 HOH A 22 522 20 HOH HOH . H 4 HOH A 23 523 32 HOH HOH . H 4 HOH A 24 524 14 HOH HOH . H 4 HOH A 25 525 62 HOH HOH . H 4 HOH A 26 526 71 HOH HOH . H 4 HOH A 27 527 16 HOH HOH . H 4 HOH A 28 528 39 HOH HOH . H 4 HOH A 29 529 17 HOH HOH . H 4 HOH A 30 530 5 HOH HOH . H 4 HOH A 31 531 99 HOH HOH . H 4 HOH A 32 532 28 HOH HOH . H 4 HOH A 33 533 111 HOH HOH . H 4 HOH A 34 534 79 HOH HOH . H 4 HOH A 35 535 42 HOH HOH . H 4 HOH A 36 536 106 HOH HOH . H 4 HOH A 37 537 95 HOH HOH . H 4 HOH A 38 538 36 HOH HOH . H 4 HOH A 39 539 7 HOH HOH . H 4 HOH A 40 540 37 HOH HOH . H 4 HOH A 41 541 19 HOH HOH . H 4 HOH A 42 542 78 HOH HOH . H 4 HOH A 43 543 9 HOH HOH . H 4 HOH A 44 544 90 HOH HOH . H 4 HOH A 45 545 3 HOH HOH . H 4 HOH A 46 546 27 HOH HOH . H 4 HOH A 47 547 34 HOH HOH . H 4 HOH A 48 548 53 HOH HOH . H 4 HOH A 49 549 23 HOH HOH . H 4 HOH A 50 550 45 HOH HOH . H 4 HOH A 51 551 50 HOH HOH . H 4 HOH A 52 552 4 HOH HOH . H 4 HOH A 53 553 29 HOH HOH . H 4 HOH A 54 554 12 HOH HOH . H 4 HOH A 55 555 57 HOH HOH . H 4 HOH A 56 556 26 HOH HOH . H 4 HOH A 57 557 47 HOH HOH . H 4 HOH A 58 558 77 HOH HOH . H 4 HOH A 59 559 21 HOH HOH . H 4 HOH A 60 560 105 HOH HOH . H 4 HOH A 61 561 43 HOH HOH . H 4 HOH A 62 562 54 HOH HOH . H 4 HOH A 63 563 112 HOH HOH . H 4 HOH A 64 564 2 HOH HOH . H 4 HOH A 65 565 107 HOH HOH . H 4 HOH A 66 566 92 HOH HOH . H 4 HOH A 67 567 66 HOH HOH . H 4 HOH A 68 568 75 HOH HOH . H 4 HOH A 69 569 76 HOH HOH . H 4 HOH A 70 570 69 HOH HOH . H 4 HOH A 71 571 61 HOH HOH . H 4 HOH A 72 572 22 HOH HOH . H 4 HOH A 73 573 18 HOH HOH . H 4 HOH A 74 574 64 HOH HOH . H 4 HOH A 75 575 85 HOH HOH . H 4 HOH A 76 576 82 HOH HOH . H 4 HOH A 77 577 121 HOH HOH . H 4 HOH A 78 578 102 HOH HOH . H 4 HOH A 79 579 41 HOH HOH . H 4 HOH A 80 580 83 HOH HOH . H 4 HOH A 81 581 65 HOH HOH . H 4 HOH A 82 582 98 HOH HOH . H 4 HOH A 83 583 117 HOH HOH . H 4 HOH A 84 584 81 HOH HOH . H 4 HOH A 85 585 10 HOH HOH . H 4 HOH A 86 586 108 HOH HOH . H 4 HOH A 87 587 89 HOH HOH . H 4 HOH A 88 588 8 HOH HOH . H 4 HOH A 89 589 114 HOH HOH . H 4 HOH A 90 590 104 HOH HOH . H 4 HOH A 91 591 86 HOH HOH . H 4 HOH A 92 592 25 HOH HOH . H 4 HOH A 93 593 80 HOH HOH . H 4 HOH A 94 594 88 HOH HOH . H 4 HOH A 95 595 118 HOH HOH . H 4 HOH A 96 596 38 HOH HOH . H 4 HOH A 97 597 13 HOH HOH . H 4 HOH A 98 598 67 HOH HOH . H 4 HOH A 99 599 97 HOH HOH . H 4 HOH A 100 600 84 HOH HOH . H 4 HOH A 101 601 51 HOH HOH . H 4 HOH A 102 602 31 HOH HOH . H 4 HOH A 103 603 11 HOH HOH . H 4 HOH A 104 604 113 HOH HOH . H 4 HOH A 105 605 60 HOH HOH . H 4 HOH A 106 606 48 HOH HOH . H 4 HOH A 107 607 119 HOH HOH . H 4 HOH A 108 608 15 HOH HOH . H 4 HOH A 109 609 59 HOH HOH . H 4 HOH A 110 610 120 HOH HOH . H 4 HOH A 111 611 68 HOH HOH . H 4 HOH A 112 612 122 HOH HOH . H 4 HOH A 113 613 110 HOH HOH . H 4 HOH A 114 614 44 HOH HOH . H 4 HOH A 115 615 103 HOH HOH . H 4 HOH A 116 616 91 HOH HOH . H 4 HOH A 117 617 87 HOH HOH . H 4 HOH A 118 618 73 HOH HOH . H 4 HOH A 119 619 40 HOH HOH . H 4 HOH A 120 620 63 HOH HOH . H 4 HOH A 121 621 30 HOH HOH . H 4 HOH A 122 622 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9YE . . . B 2 -17.373 5.236 20.169 1 57.44 ? C1 9YE 401 A 1 HETATM 2 C C10 9YE . . . B 2 -20.351 0.845 18.001 1 66.08 ? C10 9YE 401 A 1 HETATM 3 C C11 9YE . . . B 2 -20.323 1.152 19.352 1 62.17 ? C11 9YE 401 A 1 HETATM 4 C C12 9YE . . . B 2 -21.135 -0.297 17.454 1 68.41 ? C12 9YE 401 A 1 HETATM 5 C C13 9YE . . . B 2 -22.333 -0.543 18.348 1 68.6 ? C13 9YE 401 A 1 HETATM 6 C C14 9YE . . . B 2 -21.942 -0.723 19.789 1 66.9 ? C14 9YE 401 A 1 HETATM 7 C C15 9YE . . . B 2 -21.048 0.366 20.34 1 65.41 ? C15 9YE 401 A 1 HETATM 8 C C16 9YE . . . B 2 -17.362 5.213 15.109 1 71.88 ? C16 9YE 401 A 1 HETATM 9 C C17 9YE . . . B 2 -19.283 1.852 15.845 1 73.17 ? C17 9YE 401 A 1 HETATM 10 C C18 9YE . . . B 2 -20.374 2.627 15.145 1 75.33 ? C18 9YE 401 A 1 HETATM 11 C C19 9YE . . . B 2 -18.965 0.507 15.211 1 73.81 ? C19 9YE 401 A 1 HETATM 12 C C2 9YE . . . B 2 -16.674 5.979 19.234 1 54.71 ? C2 9YE 401 A 1 HETATM 13 C C20 9YE . . . B 2 -17.327 4.486 13.81 1 78.35 ? C20 9YE 401 A 1 HETATM 14 C C21 9YE . . . B 2 -16.421 4.612 12.862 1 84.91 ? C21 9YE 401 A 1 HETATM 15 C C22 9YE . . . B 2 -15.382 5.692 12.88 1 86.23 ? C22 9YE 401 A 1 HETATM 16 C C23 9YE . . . B 2 -16.35 3.688 11.684 1 86.3 ? C23 9YE 401 A 1 HETATM 17 C C3 9YE . . . B 2 -16.708 5.668 17.89 1 53.38 ? C3 9YE 401 A 1 HETATM 18 C C4 9YE . . . B 2 -17.453 4.591 17.437 1 58.16 ? C4 9YE 401 A 1 HETATM 19 C C5 9YE . . . B 2 -18.17 3.818 18.359 1 61.15 ? C5 9YE 401 A 1 HETATM 20 C C6 9YE . . . B 2 -18.114 4.165 19.741 1 58.99 ? C6 9YE 401 A 1 HETATM 21 C C7 9YE . . . B 2 -19.022 2.659 18.231 1 64.28 ? C7 9YE 401 A 1 HETATM 22 C C8 9YE . . . B 2 -19.49 2.287 19.522 1 63.8 ? C8 9YE 401 A 1 HETATM 23 C C9 9YE . . . B 2 -18.941 3.222 20.525 1 62.89 ? C9 9YE 401 A 1 HETATM 24 N N1 9YE . . . B 2 -19.544 1.773 17.302 1 68.95 ? N1 9YE 401 A 1 HETATM 25 O O1 9YE . . . B 2 -19.103 3.256 21.732 1 67.48 ? O1 9YE 401 A 1 HETATM 26 O O2 9YE . . . B 2 -20.948 0.555 21.547 1 65.93 ? O2 9YE 401 A 1 HETATM 27 O O3 9YE . . . B 2 -17.522 4.21 16.121 1 63.37 ? O3 9YE 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #