data_5ON4
#
_model_server_result.job_id            4gZ_kpmS1nKDRGe4e6pw-Q 
_model_server_result.datetime_utc      '2024-11-16 14:49:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5on4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":603}' 
#
_entry.id    5ON4 
#
_exptl.entry_id    5ON4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5ON4 
_cell.length_a            86.69 
_cell.length_b            94.121 
_cell.length_c            129.545 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5ON4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C FE FE . A FE 601 1_555 D NAL 9YK . A 9YK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc2 C FE FE . A FE 601 1_555 D N 9YK . A 9YK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc3 C FE FE . A FE 601 1_555 D O 9YK . A 9YK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc4 C FE FE . A FE 601 1_555 D OAY 9YK . A 9YK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc5 C FE FE . A FE 601 1_555 E O3 GOL . A GOL 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? 
metalc ? metalc6 G FE FE . B FE 601 1_555 H OAY 9YK . B 9YK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc7 G FE FE . B FE 601 1_555 H N 9YK . B 9YK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc8 G FE FE . B FE 601 1_555 H O 9YK . B 9YK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc9 G FE FE . B FE 601 1_555 H NAL 9YK . B 9YK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc10 G FE FE . B FE 601 1_555 H OBA 9YK . B 9YK 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 173 n n 
C1 C2 GOL sing 174 n n 
C1 H11 GOL sing 175 n n 
C1 H12 GOL sing 176 n n 
O1 HO1 GOL sing 177 n n 
C2 O2 GOL sing 178 n n 
C2 C3 GOL sing 179 n n 
C2 H2 GOL sing 180 n n 
O2 HO2 GOL sing 181 n n 
C3 O3 GOL sing 182 n n 
C3 H31 GOL sing 183 n n 
C3 H32 GOL sing 184 n n 
O3 HO3 GOL sing 185 n n 
#
_atom_sites.entry_id                     5ON4 
_atom_sites.fract_transf_matrix[1][1]    0.011535 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010625 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007719 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE A 1 601 1 FE FE . 
D 3 9YK A 1 602 1 9YK BHZ . 
E 4 GOL A 1 603 1 GOL GOL . 
F 4 GOL A 1 604 4 GOL GOL . 
G 2 FE B 1 601 2 FE FE . 
H 3 9YK B 1 602 2 9YK BHZ . 
I 4 GOL B 1 603 2 GOL GOL . 
J 4 GOL B 1 604 3 GOL GOL . 
K 5 HOH A 1 701 6 HOH HOH . 
K 5 HOH A 2 702 55 HOH HOH . 
K 5 HOH A 3 703 81 HOH HOH . 
K 5 HOH A 4 704 38 HOH HOH . 
K 5 HOH A 5 705 24 HOH HOH . 
K 5 HOH A 6 706 37 HOH HOH . 
K 5 HOH A 7 707 88 HOH HOH . 
K 5 HOH A 8 708 80 HOH HOH . 
K 5 HOH A 9 709 53 HOH HOH . 
K 5 HOH A 10 710 54 HOH HOH . 
K 5 HOH A 11 711 36 HOH HOH . 
K 5 HOH A 12 712 10 HOH HOH . 
K 5 HOH A 13 713 17 HOH HOH . 
K 5 HOH A 14 714 83 HOH HOH . 
K 5 HOH A 15 715 8 HOH HOH . 
K 5 HOH A 16 716 15 HOH HOH . 
K 5 HOH A 17 717 86 HOH HOH . 
K 5 HOH A 18 718 71 HOH HOH . 
K 5 HOH A 19 719 42 HOH HOH . 
K 5 HOH A 20 720 13 HOH HOH . 
K 5 HOH A 21 721 67 HOH HOH . 
K 5 HOH A 22 722 63 HOH HOH . 
K 5 HOH A 23 723 74 HOH HOH . 
K 5 HOH A 24 724 47 HOH HOH . 
K 5 HOH A 25 725 2 HOH HOH . 
K 5 HOH A 26 726 61 HOH HOH . 
K 5 HOH A 27 727 7 HOH HOH . 
K 5 HOH A 28 728 79 HOH HOH . 
K 5 HOH A 29 729 62 HOH HOH . 
K 5 HOH A 30 730 11 HOH HOH . 
K 5 HOH A 31 731 3 HOH HOH . 
K 5 HOH A 32 732 43 HOH HOH . 
K 5 HOH A 33 733 21 HOH HOH . 
K 5 HOH A 34 734 31 HOH HOH . 
K 5 HOH A 35 735 27 HOH HOH . 
K 5 HOH A 36 736 32 HOH HOH . 
K 5 HOH A 37 737 20 HOH HOH . 
K 5 HOH A 38 738 89 HOH HOH . 
K 5 HOH A 39 739 69 HOH HOH . 
K 5 HOH A 40 740 25 HOH HOH . 
K 5 HOH A 41 741 85 HOH HOH . 
K 5 HOH A 42 742 33 HOH HOH . 
K 5 HOH A 43 743 58 HOH HOH . 
K 5 HOH A 44 744 59 HOH HOH . 
K 5 HOH A 45 745 40 HOH HOH . 
K 5 HOH A 46 746 70 HOH HOH . 
K 5 HOH A 47 747 48 HOH HOH . 
K 5 HOH A 48 748 23 HOH HOH . 
K 5 HOH A 49 749 41 HOH HOH . 
K 5 HOH A 50 750 26 HOH HOH . 
K 5 HOH A 51 751 39 HOH HOH . 
K 5 HOH A 52 752 60 HOH HOH . 
K 5 HOH A 53 753 66 HOH HOH . 
L 5 HOH B 1 701 73 HOH HOH . 
L 5 HOH B 2 702 77 HOH HOH . 
L 5 HOH B 3 703 19 HOH HOH . 
L 5 HOH B 4 704 52 HOH HOH . 
L 5 HOH B 5 705 44 HOH HOH . 
L 5 HOH B 6 706 16 HOH HOH . 
L 5 HOH B 7 707 78 HOH HOH . 
L 5 HOH B 8 708 90 HOH HOH . 
L 5 HOH B 9 709 28 HOH HOH . 
L 5 HOH B 10 710 18 HOH HOH . 
L 5 HOH B 11 711 34 HOH HOH . 
L 5 HOH B 12 712 14 HOH HOH . 
L 5 HOH B 13 713 49 HOH HOH . 
L 5 HOH B 14 714 84 HOH HOH . 
L 5 HOH B 15 715 5 HOH HOH . 
L 5 HOH B 16 716 50 HOH HOH . 
L 5 HOH B 17 717 12 HOH HOH . 
L 5 HOH B 18 718 1 HOH HOH . 
L 5 HOH B 19 719 65 HOH HOH . 
L 5 HOH B 20 720 30 HOH HOH . 
L 5 HOH B 21 721 57 HOH HOH . 
L 5 HOH B 22 722 22 HOH HOH . 
L 5 HOH B 23 723 64 HOH HOH . 
L 5 HOH B 24 724 9 HOH HOH . 
L 5 HOH B 25 725 82 HOH HOH . 
L 5 HOH B 26 726 4 HOH HOH . 
L 5 HOH B 27 727 87 HOH HOH . 
L 5 HOH B 28 728 75 HOH HOH . 
L 5 HOH B 29 729 51 HOH HOH . 
L 5 HOH B 30 730 76 HOH HOH . 
L 5 HOH B 31 731 56 HOH HOH . 
L 5 HOH B 32 732 35 HOH HOH . 
L 5 HOH B 33 733 45 HOH HOH . 
L 5 HOH B 34 734 68 HOH HOH . 
L 5 HOH B 35 735 46 HOH HOH . 
L 5 HOH B 36 736 29 HOH HOH . 
L 5 HOH B 37 737 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -1.227 1.405 37.467 1 76.62 ? C1 GOL 603 A 1 
HETATM 2 O O1 GOL . . . E 4 -1.075 2.093 36.245 1 70.18 ? O1 GOL 603 A 1 
HETATM 3 C C2 GOL . . . E 4 -0.194 1.902 38.473 1 65.22 ? C2 GOL 603 A 1 
HETATM 4 O O2 GOL . . . E 4 0.643 2.852 37.857 1 81.34 ? O2 GOL 603 A 1 
HETATM 5 C C3 GOL . . . E 4 0.654 0.738 38.97 1 77.41 ? C3 GOL 603 A 1 
HETATM 6 O O3 GOL . . . E 4 1.263 0.084 37.879 1 84.98 ? O3 GOL 603 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#