data_5ONL # _model_server_result.job_id 8r5nuK-KP0IH1klVts5D2Q _model_server_result.datetime_utc '2025-01-10 22:35:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5onl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5ONL # _exptl.entry_id 5ONL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.042 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'fluoroacetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5ONL _cell.length_a 38.612 _cell.length_b 47.284 _cell.length_c 99.893 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ONL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H3 F O2' _chem_comp.formula_weight 78.042 _chem_comp.id FAH _chem_comp.mon_nstd_flag . _chem_comp.name 'fluoroacetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C FAH doub 86 n n OXT C FAH sing 87 n n C CH3 FAH sing 88 n n CH3 F FAH sing 89 n n CH3 HH3 FAH sing 90 n n CH3 HH3A FAH sing 91 n n OXT HOXT FAH sing 92 n n # _atom_sites.entry_id 5ONL _atom_sites.fract_transf_matrix[1][1] 0.025899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 3 010 A 1 302 1 010 010 . D 4 FAH A 1 303 1 FAH FAH . E 5 FLC A 1 304 1 FLC FLC . F 6 HOH A 1 401 196 HOH HOH . F 6 HOH A 2 402 206 HOH HOH . F 6 HOH A 3 403 113 HOH HOH . F 6 HOH A 4 404 153 HOH HOH . F 6 HOH A 5 405 186 HOH HOH . F 6 HOH A 6 406 188 HOH HOH . F 6 HOH A 7 407 176 HOH HOH . F 6 HOH A 8 408 213 HOH HOH . F 6 HOH A 9 409 109 HOH HOH . F 6 HOH A 10 410 59 HOH HOH . F 6 HOH A 11 411 54 HOH HOH . F 6 HOH A 12 412 69 HOH HOH . F 6 HOH A 13 413 10 HOH HOH . F 6 HOH A 14 414 16 HOH HOH . F 6 HOH A 15 415 82 HOH HOH . F 6 HOH A 16 416 102 HOH HOH . F 6 HOH A 17 417 48 HOH HOH . F 6 HOH A 18 418 133 HOH HOH . F 6 HOH A 19 419 4 HOH HOH . F 6 HOH A 20 420 91 HOH HOH . F 6 HOH A 21 421 100 HOH HOH . F 6 HOH A 22 422 173 HOH HOH . F 6 HOH A 23 423 68 HOH HOH . F 6 HOH A 24 424 39 HOH HOH . F 6 HOH A 25 425 199 HOH HOH . F 6 HOH A 26 426 114 HOH HOH . F 6 HOH A 27 427 93 HOH HOH . F 6 HOH A 28 428 179 HOH HOH . F 6 HOH A 29 429 78 HOH HOH . F 6 HOH A 30 430 17 HOH HOH . F 6 HOH A 31 431 98 HOH HOH . F 6 HOH A 32 432 184 HOH HOH . F 6 HOH A 33 433 80 HOH HOH . F 6 HOH A 34 434 105 HOH HOH . F 6 HOH A 35 435 34 HOH HOH . F 6 HOH A 36 436 35 HOH HOH . F 6 HOH A 37 437 92 HOH HOH . F 6 HOH A 38 438 86 HOH HOH . F 6 HOH A 39 439 166 HOH HOH . F 6 HOH A 40 440 209 HOH HOH . F 6 HOH A 41 441 205 HOH HOH . F 6 HOH A 42 442 32 HOH HOH . F 6 HOH A 43 443 183 HOH HOH . F 6 HOH A 44 444 135 HOH HOH . F 6 HOH A 45 445 115 HOH HOH . F 6 HOH A 46 446 104 HOH HOH . F 6 HOH A 47 447 58 HOH HOH . F 6 HOH A 48 448 110 HOH HOH . F 6 HOH A 49 449 191 HOH HOH . F 6 HOH A 50 450 74 HOH HOH . F 6 HOH A 51 451 88 HOH HOH . F 6 HOH A 52 452 193 HOH HOH . F 6 HOH A 53 453 41 HOH HOH . F 6 HOH A 54 454 164 HOH HOH . F 6 HOH A 55 455 161 HOH HOH . F 6 HOH A 56 456 141 HOH HOH . F 6 HOH A 57 457 13 HOH HOH . F 6 HOH A 58 458 120 HOH HOH . F 6 HOH A 59 459 28 HOH HOH . F 6 HOH A 60 460 202 HOH HOH . F 6 HOH A 61 461 8 HOH HOH . F 6 HOH A 62 462 117 HOH HOH . F 6 HOH A 63 463 37 HOH HOH . F 6 HOH A 64 464 1 HOH HOH . F 6 HOH A 65 465 21 HOH HOH . F 6 HOH A 66 466 57 HOH HOH . F 6 HOH A 67 467 154 HOH HOH . F 6 HOH A 68 468 33 HOH HOH . F 6 HOH A 69 469 185 HOH HOH . F 6 HOH A 70 470 90 HOH HOH . F 6 HOH A 71 471 23 HOH HOH . F 6 HOH A 72 472 51 HOH HOH . F 6 HOH A 73 473 42 HOH HOH . F 6 HOH A 74 474 50 HOH HOH . F 6 HOH A 75 475 5 HOH HOH . F 6 HOH A 76 476 49 HOH HOH . F 6 HOH A 77 477 20 HOH HOH . F 6 HOH A 78 478 2 HOH HOH . F 6 HOH A 79 479 197 HOH HOH . F 6 HOH A 80 480 18 HOH HOH . F 6 HOH A 81 481 63 HOH HOH . F 6 HOH A 82 482 87 HOH HOH . F 6 HOH A 83 483 159 HOH HOH . F 6 HOH A 84 484 25 HOH HOH . F 6 HOH A 85 485 83 HOH HOH . F 6 HOH A 86 486 3 HOH HOH . F 6 HOH A 87 487 40 HOH HOH . F 6 HOH A 88 488 45 HOH HOH . F 6 HOH A 89 489 15 HOH HOH . F 6 HOH A 90 490 158 HOH HOH . F 6 HOH A 91 491 7 HOH HOH . F 6 HOH A 92 492 97 HOH HOH . F 6 HOH A 93 493 19 HOH HOH . F 6 HOH A 94 494 12 HOH HOH . F 6 HOH A 95 495 170 HOH HOH . F 6 HOH A 96 496 95 HOH HOH . F 6 HOH A 97 497 99 HOH HOH . F 6 HOH A 98 498 180 HOH HOH . F 6 HOH A 99 499 165 HOH HOH . F 6 HOH A 100 500 11 HOH HOH . F 6 HOH A 101 501 177 HOH HOH . F 6 HOH A 102 502 46 HOH HOH . F 6 HOH A 103 503 119 HOH HOH . F 6 HOH A 104 504 9 HOH HOH . F 6 HOH A 105 505 89 HOH HOH . F 6 HOH A 106 506 156 HOH HOH . F 6 HOH A 107 507 71 HOH HOH . F 6 HOH A 108 508 81 HOH HOH . F 6 HOH A 109 509 108 HOH HOH . F 6 HOH A 110 510 6 HOH HOH . F 6 HOH A 111 511 62 HOH HOH . F 6 HOH A 112 512 27 HOH HOH . F 6 HOH A 113 513 26 HOH HOH . F 6 HOH A 114 514 121 HOH HOH . F 6 HOH A 115 515 147 HOH HOH . F 6 HOH A 116 516 65 HOH HOH . F 6 HOH A 117 517 107 HOH HOH . F 6 HOH A 118 518 125 HOH HOH . F 6 HOH A 119 519 70 HOH HOH . F 6 HOH A 120 520 194 HOH HOH . F 6 HOH A 121 521 76 HOH HOH . F 6 HOH A 122 522 31 HOH HOH . F 6 HOH A 123 523 24 HOH HOH . F 6 HOH A 124 524 79 HOH HOH . F 6 HOH A 125 525 181 HOH HOH . F 6 HOH A 126 526 61 HOH HOH . F 6 HOH A 127 527 116 HOH HOH . F 6 HOH A 128 528 128 HOH HOH . F 6 HOH A 129 529 38 HOH HOH . F 6 HOH A 130 530 160 HOH HOH . F 6 HOH A 131 531 67 HOH HOH . F 6 HOH A 132 532 142 HOH HOH . F 6 HOH A 133 533 55 HOH HOH . F 6 HOH A 134 534 144 HOH HOH . F 6 HOH A 135 535 77 HOH HOH . F 6 HOH A 136 536 122 HOH HOH . F 6 HOH A 137 537 146 HOH HOH . F 6 HOH A 138 538 124 HOH HOH . F 6 HOH A 139 539 30 HOH HOH . F 6 HOH A 140 540 129 HOH HOH . F 6 HOH A 141 541 101 HOH HOH . F 6 HOH A 142 542 56 HOH HOH . F 6 HOH A 143 543 127 HOH HOH . F 6 HOH A 144 544 155 HOH HOH . F 6 HOH A 145 545 143 HOH HOH . F 6 HOH A 146 546 150 HOH HOH . F 6 HOH A 147 547 29 HOH HOH . F 6 HOH A 148 548 162 HOH HOH . F 6 HOH A 149 549 171 HOH HOH . F 6 HOH A 150 550 111 HOH HOH . F 6 HOH A 151 551 130 HOH HOH . F 6 HOH A 152 552 134 HOH HOH . F 6 HOH A 153 553 178 HOH HOH . F 6 HOH A 154 554 168 HOH HOH . F 6 HOH A 155 555 123 HOH HOH . F 6 HOH A 156 556 72 HOH HOH . F 6 HOH A 157 557 172 HOH HOH . F 6 HOH A 158 558 53 HOH HOH . F 6 HOH A 159 559 151 HOH HOH . F 6 HOH A 160 560 138 HOH HOH . F 6 HOH A 161 561 175 HOH HOH . F 6 HOH A 162 562 85 HOH HOH . F 6 HOH A 163 563 208 HOH HOH . F 6 HOH A 164 564 163 HOH HOH . F 6 HOH A 165 565 137 HOH HOH . F 6 HOH A 166 566 195 HOH HOH . F 6 HOH A 167 567 140 HOH HOH . F 6 HOH A 168 568 152 HOH HOH . F 6 HOH A 169 569 126 HOH HOH . F 6 HOH A 170 570 131 HOH HOH . F 6 HOH A 171 571 207 HOH HOH . F 6 HOH A 172 572 106 HOH HOH . F 6 HOH A 173 573 44 HOH HOH . F 6 HOH A 174 574 204 HOH HOH . F 6 HOH A 175 575 36 HOH HOH . F 6 HOH A 176 576 201 HOH HOH . F 6 HOH A 177 577 52 HOH HOH . F 6 HOH A 178 578 198 HOH HOH . F 6 HOH A 179 579 43 HOH HOH . F 6 HOH A 180 580 94 HOH HOH . F 6 HOH A 181 581 169 HOH HOH . F 6 HOH A 182 582 60 HOH HOH . F 6 HOH A 183 583 192 HOH HOH . F 6 HOH A 184 584 174 HOH HOH . F 6 HOH A 185 585 64 HOH HOH . F 6 HOH A 186 586 182 HOH HOH . F 6 HOH A 187 587 149 HOH HOH . F 6 HOH A 188 588 47 HOH HOH . F 6 HOH A 189 589 203 HOH HOH . F 6 HOH A 190 590 96 HOH HOH . F 6 HOH A 191 591 190 HOH HOH . F 6 HOH A 192 592 136 HOH HOH . F 6 HOH A 193 593 112 HOH HOH . F 6 HOH A 194 594 139 HOH HOH . F 6 HOH A 195 595 84 HOH HOH . F 6 HOH A 196 596 200 HOH HOH . F 6 HOH A 197 597 167 HOH HOH . F 6 HOH A 198 598 73 HOH HOH . F 6 HOH A 199 599 145 HOH HOH . F 6 HOH A 200 600 75 HOH HOH . F 6 HOH A 201 601 157 HOH HOH . F 6 HOH A 202 602 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FAH . A . D 4 9.393 59.476 15.169 0.5 21.93 ? C FAH 303 A 1 HETATM 2 C C FAH . B . D 4 8.411 58.483 14.398 0.5 25.06 ? C FAH 303 A 1 HETATM 3 F F FAH . A . D 4 11.228 58.335 14.342 0.5 20.14 ? F FAH 303 A 1 HETATM 4 F F FAH . B . D 4 10.75 59.02 14.054 0.5 22.4 ? F FAH 303 A 1 HETATM 5 O O FAH . A . D 4 9.502 60.646 15.582 0.5 22.58 ? O FAH 303 A 1 HETATM 6 O O FAH . B . D 4 8.234 58.39 13.185 0.5 20.77 ? O FAH 303 A 1 HETATM 7 C CH3 FAH . A . D 4 10.166 59.082 13.927 0.5 22.18 ? CH3 FAH 303 A 1 HETATM 8 C CH3 FAH . B . D 4 9.653 59.295 14.843 0.5 23.61 ? CH3 FAH 303 A 1 HETATM 9 O OXT FAH . A . D 4 8.654 58.584 15.702 0.5 26.09 ? OXT FAH 303 A 1 HETATM 10 O OXT FAH . B . D 4 7.591 58.002 15.242 0.5 23.75 ? OXT FAH 303 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 10 #