data_5ONO # _model_server_result.job_id A4PDDe7CAz7--AeIrYt2kg _model_server_result.datetime_utc '2024-11-20 02:46:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ono # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5ONO # _exptl.entry_id 5ONO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ONO _cell.length_a 71.418 _cell.length_b 71.418 _cell.length_c 68.838 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ONO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H10 N2 O2' _chem_comp.formula_weight 142.156 _chem_comp.id 4CS _chem_comp.mon_nstd_flag . _chem_comp.name '(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ECTOINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 4CS doub 1 n n C OXT 4CS sing 2 n n C CA 4CS sing 3 n n OXT HOXT 4CS sing 4 n n CA CB 4CS sing 5 n n CA N 4CS sing 6 n n CA HA 4CS sing 7 n n CB CAD 4CS sing 8 n n CB HB1 4CS sing 9 n n CB HB2 4CS sing 10 n n CAD NAG 4CS sing 11 n n CAD HAD1 4CS sing 12 n n CAD HAD2 4CS sing 13 n n NAG CAI 4CS sing 14 n n NAG HNAG 4CS sing 15 n n CAI CAA 4CS sing 16 n n CAI N 4CS doub 17 n n CAA HAA1 4CS sing 18 n n CAA HAA2 4CS sing 19 n n CAA HAA3 4CS sing 20 n n # _atom_sites.entry_id 5ONO _atom_sites.fract_transf_matrix[1][1] 0.014002 _atom_sites.fract_transf_matrix[1][2] 0.008084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 201 1 FE FE . C 3 4CS A 1 202 1 4CS 4CS . D 4 HOH A 1 301 13 HOH HOH . D 4 HOH A 2 302 25 HOH HOH . D 4 HOH A 3 303 41 HOH HOH . D 4 HOH A 4 304 24 HOH HOH . D 4 HOH A 5 305 1 HOH HOH . D 4 HOH A 6 306 7 HOH HOH . D 4 HOH A 7 307 19 HOH HOH . D 4 HOH A 8 308 31 HOH HOH . D 4 HOH A 9 309 6 HOH HOH . D 4 HOH A 10 310 9 HOH HOH . D 4 HOH A 11 311 16 HOH HOH . D 4 HOH A 12 312 29 HOH HOH . D 4 HOH A 13 313 22 HOH HOH . D 4 HOH A 14 314 11 HOH HOH . D 4 HOH A 15 315 42 HOH HOH . D 4 HOH A 16 316 38 HOH HOH . D 4 HOH A 17 317 3 HOH HOH . D 4 HOH A 18 318 40 HOH HOH . D 4 HOH A 19 319 21 HOH HOH . D 4 HOH A 20 320 23 HOH HOH . D 4 HOH A 21 321 15 HOH HOH . D 4 HOH A 22 322 30 HOH HOH . D 4 HOH A 23 323 12 HOH HOH . D 4 HOH A 24 324 4 HOH HOH . D 4 HOH A 25 325 18 HOH HOH . D 4 HOH A 26 326 35 HOH HOH . D 4 HOH A 27 327 17 HOH HOH . D 4 HOH A 28 328 2 HOH HOH . D 4 HOH A 29 329 27 HOH HOH . D 4 HOH A 30 330 10 HOH HOH . D 4 HOH A 31 331 37 HOH HOH . D 4 HOH A 32 332 14 HOH HOH . D 4 HOH A 33 333 5 HOH HOH . D 4 HOH A 34 334 20 HOH HOH . D 4 HOH A 35 335 33 HOH HOH . D 4 HOH A 36 336 28 HOH HOH . D 4 HOH A 37 337 32 HOH HOH . D 4 HOH A 38 338 34 HOH HOH . D 4 HOH A 39 339 8 HOH HOH . D 4 HOH A 40 340 36 HOH HOH . D 4 HOH A 41 341 39 HOH HOH . D 4 HOH A 42 342 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O 4CS . . . C 3 16.426 80.902 70.963 1 55.31 ? O 4CS 202 A 1 HETATM 2 C C 4CS . . . C 3 15.719 81.305 71.944 1 55.75 ? C 4CS 202 A 1 HETATM 3 O OXT 4CS . . . C 3 16.139 82.117 72.813 1 52.23 ? OXT 4CS 202 A 1 HETATM 4 C CA 4CS . . . C 3 14.33 80.835 72.082 1 60.34 ? CA 4CS 202 A 1 HETATM 5 C CB 4CS . . . C 3 13.437 82.064 71.52 1 61.57 ? CB 4CS 202 A 1 HETATM 6 C CAD 4CS . . . C 3 12.235 81.719 71.503 1 70.11 ? CAD 4CS 202 A 1 HETATM 7 N NAG 4CS . . . C 3 11.759 81.443 72.868 1 59.29 ? NAG 4CS 202 A 1 HETATM 8 C CAI 4CS . . . C 3 12.557 80.889 73.762 1 34.52 ? CAI 4CS 202 A 1 HETATM 9 C CAA 4CS . . . C 3 12.047 80.585 75.126 1 17.55 ? CAA 4CS 202 A 1 HETATM 10 N N 4CS . . . C 3 13.996 80.543 73.371 1 60.41 ? N 4CS 202 A 1 HETATM 11 H HA 4CS . . . C 3 14.34 80.057 71.493 1 72.4 ? HA 4CS 202 A 1 HETATM 12 H HB1 4CS . . . C 3 13.698 82.186 70.587 1 73.89 ? HB1 4CS 202 A 1 HETATM 13 H HB2 4CS . . . C 3 13.506 82.776 72.184 1 73.89 ? HB2 4CS 202 A 1 HETATM 14 H HAD1 4CS . . . C 3 11.736 82.5 71.198 1 84.14 ? HAD1 4CS 202 A 1 HETATM 15 H HAD2 4CS . . . C 3 12.208 80.865 71.031 1 84.14 ? HAD2 4CS 202 A 1 HETATM 16 H HNAG 4CS . . . C 3 10.899 81.643 73.094 1 71.15 ? HNAG 4CS 202 A 1 HETATM 17 H HAA1 4CS . . . C 3 11.909 81.418 75.615 1 21.06 ? HAA1 4CS 202 A 1 HETATM 18 H HAA2 4CS . . . C 3 12.696 80.032 75.601 1 21.06 ? HAA2 4CS 202 A 1 HETATM 19 H HAA3 4CS . . . C 3 11.2 80.104 75.057 1 21.06 ? HAA3 4CS 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #