data_5OO6
#
_model_server_result.job_id            oNBVQdE_r3hHq7Hp1sCVHA 
_model_server_result.datetime_utc      '2024-10-19 21:24:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oo6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":201}' 
#
_entry.id    5OO6 
#
_exptl.entry_id    5OO6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              539.223 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.3 
_cell.angle_gamma         90.02 
_cell.entry_id            5OO6 
_cell.length_a            70.52 
_cell.length_b            112.99 
_cell.length_c            270.98 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OO6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
PISA trimeric 3 author_and_software_defined_assembly 3 
PISA trimeric 3 author_and_software_defined_assembly 4 
PISA trimeric 3 author_and_software_defined_assembly 5 
PISA trimeric 3 author_and_software_defined_assembly 6 
PISA trimeric 3 author_and_software_defined_assembly 7 
PISA trimeric 3 author_and_software_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,Q,Y 1 1 
C,D,R,Z 2 1 
E,F,S,AA 3 1 
G,H,T,BA 4 1 
I,J,U,CA 5 1 
K,L,V,DA 6 1 
M,N,W,EA 7 1 
O,P,X,FA 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
? 4 DA N N 
? 4 EA N N 
? 4 FA N N 
#
_chem_comp.formula           'C11 H20 N5 O14 P3' 
_chem_comp.formula_weight    539.223 
_chem_comp.id                MGT 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G MGT doub 235 n n 
PG O2G MGT sing 236 n n 
PG O3G MGT sing 237 n n 
PG O3B MGT sing 238 n n 
O2G HOG2 MGT sing 239 n n 
O3G HOG3 MGT sing 240 n n 
O3B PB MGT sing 241 n n 
PB O1B MGT doub 242 n n 
PB O2B MGT sing 243 n n 
PB O3A MGT sing 244 n n 
O2B HOB2 MGT sing 245 n n 
O3A PA MGT sing 246 n n 
PA O1A MGT doub 247 n n 
PA O2A MGT sing 248 n n 
PA O5' MGT sing 249 n n 
O2A HOA2 MGT sing 250 n n 
O5' C5' MGT sing 251 n n 
C5' C4' MGT sing 252 n n 
C5' "H5'1" MGT sing 253 n n 
C5' "H5'2" MGT sing 254 n n 
C4' O4' MGT sing 255 n n 
C4' C3' MGT sing 256 n n 
C4' H4' MGT sing 257 n n 
O4' C1' MGT sing 258 n n 
C3' O3' MGT sing 259 n n 
C3' C2' MGT sing 260 n n 
C3' H3' MGT sing 261 n n 
O3' HO3' MGT sing 262 n n 
C2' O2' MGT sing 263 n n 
C2' C1' MGT sing 264 n n 
C2' H2' MGT sing 265 n n 
O2' HO2' MGT sing 266 n n 
C1' N9 MGT sing 267 n n 
C1' H1' MGT sing 268 n n 
N9 C8 MGT sing 269 n n 
N9 C4 MGT sing 270 n n 
C8 N7 MGT sing 271 n n 
C8 H81 MGT sing 272 n n 
C8 H82 MGT sing 273 n n 
N7 CM7 MGT sing 274 n n 
N7 C5 MGT sing 275 n n 
CM7 HM71 MGT sing 276 n n 
CM7 HM72 MGT sing 277 n n 
CM7 HM73 MGT sing 278 n n 
C5 C6 MGT sing 279 n n 
C5 C4 MGT doub 280 n n 
C6 O6 MGT doub 281 n n 
C6 N1 MGT sing 282 n n 
N1 C2 MGT sing 283 n n 
N1 HN1 MGT sing 284 n n 
C2 N2 MGT sing 285 n n 
C2 N3 MGT doub 286 n n 
N2 HN21 MGT sing 287 n n 
N2 HN22 MGT sing 288 n n 
N3 C4 MGT sing 289 n n 
#
_atom_sites.entry_id                     5OO6 
_atom_sites.fract_transf_matrix[1][1]    0.01418 
_atom_sites.fract_transf_matrix[1][2]    0.000005 
_atom_sites.fract_transf_matrix[1][3]    0.000074 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 4 MGT B 1 201 180 MGT MGT . 
Z 4 MGT E 1 201 180 MGT MGT . 
AA 4 MGT H 1 201 180 MGT MGT . 
BA 4 MGT K 1 201 180 MGT MGT . 
CA 4 MGT N 1 201 180 MGT MGT . 
DA 4 MGT Q 1 201 180 MGT MGT . 
EA 4 MGT T 1 201 180 MGT MGT . 
FA 4 MGT W 1 201 180 MGT MGT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG MGT . . . Y 4 -166.78 -157.209 45.977 1 69.72 ? PG MGT 201 B 1 
HETATM 2 O O1G MGT . . . Y 4 -166.852 -158.53 46.713 1 67.36 ? O1G MGT 201 B 1 
HETATM 3 O O2G MGT . . . Y 4 -168.156 -156.614 45.745 1 68.51 ? O2G MGT 201 B 1 
HETATM 4 O O3G MGT . . . Y 4 -165.893 -157.292 44.75 1 66.25 ? O3G MGT 201 B 1 
HETATM 5 O O3B MGT . . . Y 4 -165.955 -156.19 46.957 1 63.17 ? O3B MGT 201 B 1 
HETATM 6 P PB MGT . . . Y 4 -166.522 -154.822 47.614 1 60.52 ? PB MGT 201 B 1 
HETATM 7 O O1B MGT . . . Y 4 -167.237 -154.012 46.577 1 62.02 ? O1B MGT 201 B 1 
HETATM 8 O O2B MGT . . . Y 4 -167.287 -155.183 48.861 1 66.49 ? O2B MGT 201 B 1 
HETATM 9 O O3A MGT . . . Y 4 -165.311 -153.884 48.107 1 57.69 ? O3A MGT 201 B 1 
HETATM 10 P PA MGT . . . Y 4 -163.762 -154.046 47.716 1 57.01 ? PA MGT 201 B 1 
HETATM 11 O O1A MGT . . . Y 4 -162.968 -154.555 48.9 1 54.12 ? O1A MGT 201 B 1 
HETATM 12 O O2A MGT . . . Y 4 -163.628 -154.748 46.382 1 60.49 ? O2A MGT 201 B 1 
HETATM 13 O O5' MGT . . . Y 4 -163.361 -152.521 47.402 1 54.45 ? O5' MGT 201 B 1 
HETATM 14 C C5' MGT . . . Y 4 -163.507 -151.439 48.318 1 49.69 ? C5' MGT 201 B 1 
HETATM 15 C C4' MGT . . . Y 4 -163.968 -150.138 47.635 1 45.37 ? C4' MGT 201 B 1 
HETATM 16 O O4' MGT . . . Y 4 -163.958 -150.225 46.195 1 45.2 ? O4' MGT 201 B 1 
HETATM 17 C C3' MGT . . . Y 4 -165.392 -149.8 48.019 1 41.54 ? C3' MGT 201 B 1 
HETATM 18 O O3' MGT . . . Y 4 -165.595 -148.386 47.989 1 37 ? O3' MGT 201 B 1 
HETATM 19 C C2' MGT . . . Y 4 -166.162 -150.512 46.939 1 41.67 ? C2' MGT 201 B 1 
HETATM 20 O O2' MGT . . . Y 4 -167.512 -150.045 46.875 1 41.85 ? O2' MGT 201 B 1 
HETATM 21 C C1' MGT . . . Y 4 -165.313 -150.161 45.714 1 42.74 ? C1' MGT 201 B 1 
HETATM 22 N N9 MGT . . . Y 4 -165.63 -151.029 44.534 1 40.38 ? N9 MGT 201 B 1 
HETATM 23 C C8 MGT . . . Y 4 -165.037 -152.371 44.502 1 39.97 ? C8 MGT 201 B 1 
HETATM 24 N N7 MGT . . . Y 4 -165.622 -152.81 43.23 1 38.4 ? N7 MGT 201 B 1 
HETATM 25 C CM7 MGT . . . Y 4 -165.266 -154.192 42.803 1 37.58 ? CM7 MGT 201 B 1 
HETATM 26 C C5 MGT . . . Y 4 -166.392 -151.908 42.645 1 38.84 ? C5 MGT 201 B 1 
HETATM 27 C C6 MGT . . . Y 4 -167.164 -151.921 41.39 1 40.16 ? C6 MGT 201 B 1 
HETATM 28 O O6 MGT . . . Y 4 -167.187 -152.915 40.622 1 42.98 ? O6 MGT 201 B 1 
HETATM 29 N N1 MGT . . . Y 4 -167.839 -150.79 41.123 1 39.56 ? N1 MGT 201 B 1 
HETATM 30 C C2 MGT . . . Y 4 -167.823 -149.71 41.946 1 39.86 ? C2 MGT 201 B 1 
HETATM 31 N N2 MGT . . . Y 4 -168.531 -148.615 41.6 1 42.41 ? N2 MGT 201 B 1 
HETATM 32 N N3 MGT . . . Y 4 -167.131 -149.651 43.112 1 38.51 ? N3 MGT 201 B 1 
HETATM 33 C C4 MGT . . . Y 4 -166.409 -150.71 43.507 1 38.61 ? C4 MGT 201 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    304 
_model_server_stats.query_time_ms           377 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           33 
#