data_5OOC
#
_model_server_result.job_id            Z9stoDxlmrRX1_viffWquQ 
_model_server_result.datetime_utc      '2025-07-12 10:34:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ooc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":401}' 
#
_entry.id    5OOC 
#
_exptl.entry_id    5OOC 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OOC 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OOC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 J N N 
? 2 M N N 
? 2 P N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C GLU 72 B GLU 72 1_555 B N HIC 73 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 B C HIC 73 B HIC 73 1_555 B N GLY 74 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 C C GLU 72 C GLU 72 1_555 C N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 C C HIC 73 C HIC 73 1_555 C N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 E C GLU 72 E GLU 72 1_555 E N HIC 73 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 E C HIC 73 E HIC 73 1_555 E N GLY 74 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 F O2B ADP . A ADP 401 1_555 H MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc2 J O2B ADP . B ADP 401 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc3 M O2B ADP . C ADP 401 1_555 N MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc4 P O2B ADP . D ADP 401 1_555 Q MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc5 S O2B ADP . E ADP 401 1_555 T MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 104 n n 
PB O2B ADP sing 105 n n 
PB O3B ADP sing 106 n n 
PB O3A ADP sing 107 n n 
O2B HOB2 ADP sing 108 n n 
O3B HOB3 ADP sing 109 n n 
PA O1A ADP doub 110 n n 
PA O2A ADP sing 111 n n 
PA O3A ADP sing 112 n n 
PA O5' ADP sing 113 n n 
O2A HOA2 ADP sing 114 n n 
O5' C5' ADP sing 115 n n 
C5' C4' ADP sing 116 n n 
C5' "H5'1" ADP sing 117 n n 
C5' "H5'2" ADP sing 118 n n 
C4' O4' ADP sing 119 n n 
C4' C3' ADP sing 120 n n 
C4' H4' ADP sing 121 n n 
O4' C1' ADP sing 122 n n 
C3' O3' ADP sing 123 n n 
C3' C2' ADP sing 124 n n 
C3' H3' ADP sing 125 n n 
O3' HO3' ADP sing 126 n n 
C2' O2' ADP sing 127 n n 
C2' C1' ADP sing 128 n n 
C2' H2' ADP sing 129 n n 
O2' HO2' ADP sing 130 n n 
C1' N9 ADP sing 131 n n 
C1' H1' ADP sing 132 n n 
N9 C8 ADP sing 133 n y 
N9 C4 ADP sing 134 n y 
C8 N7 ADP doub 135 n y 
C8 H8 ADP sing 136 n n 
N7 C5 ADP sing 137 n y 
C5 C6 ADP sing 138 n y 
C5 C4 ADP doub 139 n y 
C6 N6 ADP sing 140 n n 
C6 N1 ADP doub 141 n y 
N6 HN61 ADP sing 142 n n 
N6 HN62 ADP sing 143 n n 
N1 C2 ADP sing 144 n y 
C2 N3 ADP doub 145 n y 
C2 H2 ADP sing 146 n n 
N3 C4 ADP sing 147 n y 
#
_atom_sites.entry_id                     5OOC 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 ADP A 1 401 376 ADP ADP . 
G 3 9ZK A 1 402 377 9ZK JAS . 
H 4 MG A 1 403 378 MG MG . 
I 3 9ZK A 1 404 377 9ZK JAS . 
J 2 ADP B 1 401 376 ADP ADP . 
K 4 MG B 1 402 378 MG MG . 
L 3 9ZK B 1 403 377 9ZK JAS . 
M 2 ADP C 1 401 376 ADP ADP . 
N 4 MG C 1 402 378 MG MG . 
O 3 9ZK C 1 403 377 9ZK JAS . 
P 2 ADP D 1 401 376 ADP ADP . 
Q 4 MG D 1 402 378 MG MG . 
R 3 9ZK D 1 403 377 9ZK JAS . 
S 2 ADP E 1 401 376 ADP ADP . 
T 4 MG E 1 402 378 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . M 2 161.671 143.921 153.781 1 53.78 ? PB ADP 401 C 1 
HETATM 2 O O1B ADP . . . M 2 162.746 143.384 152.903 1 53.1 ? O1B ADP 401 C 1 
HETATM 3 O O2B ADP . . . M 2 162.214 144.392 155.164 1 49.16 ? O2B ADP 401 C 1 
HETATM 4 O O3B ADP . . . M 2 160.439 143.044 153.846 1 53.18 ? O3B ADP 401 C 1 
HETATM 5 P PA ADP . . . M 2 162.035 146.47 153.536 1 46.98 ? PA ADP 401 C 1 
HETATM 6 O O1A ADP . . . M 2 163.474 146.156 153.462 1 48.6 ? O1A ADP 401 C 1 
HETATM 7 O O2A ADP . . . M 2 161.548 146.961 154.876 1 49.65 ? O2A ADP 401 C 1 
HETATM 8 O O3A ADP . . . M 2 161.285 145.223 153.125 1 47.5 ? O3A ADP 401 C 1 
HETATM 9 O O5' ADP . . . M 2 161.688 147.591 152.498 1 47.49 ? O5' ADP 401 C 1 
HETATM 10 C C5' ADP . . . M 2 160.937 147.198 151.384 1 47.14 ? C5' ADP 401 C 1 
HETATM 11 C C4' ADP . . . M 2 159.907 148.216 150.988 1 46.33 ? C4' ADP 401 C 1 
HETATM 12 O O4' ADP . . . M 2 160.075 149.466 151.561 1 49.52 ? O4' ADP 401 C 1 
HETATM 13 C C3' ADP . . . M 2 160.045 148.609 149.581 1 47.54 ? C3' ADP 401 C 1 
HETATM 14 O O3' ADP . . . M 2 159.848 147.522 148.711 1 50.35 ? O3' ADP 401 C 1 
HETATM 15 C C2' ADP . . . M 2 159.009 149.66 149.528 1 48.17 ? C2' ADP 401 C 1 
HETATM 16 O O2' ADP . . . M 2 157.67 149.157 149.658 1 48.19 ? O2' ADP 401 C 1 
HETATM 17 C C1' ADP . . . M 2 159.408 150.413 150.744 1 48.28 ? C1' ADP 401 C 1 
HETATM 18 N N9 ADP . . . M 2 160.349 151.417 150.284 1 49.1 ? N9 ADP 401 C 1 
HETATM 19 C C8 ADP . . . M 2 161.545 151.18 149.8 1 50.13 ? C8 ADP 401 C 1 
HETATM 20 N N7 ADP . . . M 2 162.172 152.319 149.45 1 50.49 ? N7 ADP 401 C 1 
HETATM 21 C C5 ADP . . . M 2 161.339 153.294 149.725 1 48.33 ? C5 ADP 401 C 1 
HETATM 22 C C6 ADP . . . M 2 161.339 154.727 149.604 1 51.06 ? C6 ADP 401 C 1 
HETATM 23 N N6 ADP . . . M 2 162.347 155.429 149.098 1 53.62 ? N6 ADP 401 C 1 
HETATM 24 N N1 ADP . . . M 2 160.283 155.367 150.003 1 50.22 ? N1 ADP 401 C 1 
HETATM 25 C C2 ADP . . . M 2 159.262 154.741 150.488 1 49.38 ? C2 ADP 401 C 1 
HETATM 26 N N3 ADP . . . M 2 159.167 153.447 150.628 1 48.27 ? N3 ADP 401 C 1 
HETATM 27 C C4 ADP . . . M 2 160.156 152.689 150.27 1 46.97 ? C4 ADP 401 C 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    58 
_model_server_stats.query_time_ms           367 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#