data_5OOE # _model_server_result.job_id j2u8DsZAfHaZBVsTR4LAMw _model_server_result.datetime_utc '2025-02-26 19:47:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ooe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5OOE # _exptl.entry_id 5OOE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OOE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C GLU 72 B GLU 72 1_555 B N HIC 73 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C HIC 73 B HIC 73 1_555 B N GLY 74 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C GLU 72 C GLU 72 1_555 C N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C HIC 73 C HIC 73 1_555 C N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 E C GLU 72 E GLU 72 1_555 E N HIC 73 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 E C HIC 73 E HIC 73 1_555 E N GLY 74 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 F O1G ANP . A ANP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc2 F O1B ANP . A ANP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 H O1G ANP . B ANP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc4 H O1B ANP . B ANP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc5 J O1G ANP . C ANP 401 1_555 K MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc6 J O1B ANP . C ANP 401 1_555 K MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc7 L O1G ANP . D ANP 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc8 L O1B ANP . D ANP 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc9 N O1G ANP . E ANP 401 1_555 O MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc10 N O1B ANP . E ANP 401 1_555 O MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OOE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ANP A 1 401 376 ANP ANP . G 3 MG A 1 402 377 MG MG . H 2 ANP B 1 401 376 ANP ANP . I 3 MG B 1 402 377 MG MG . J 2 ANP C 1 401 376 ANP ANP . K 3 MG C 1 402 377 MG MG . L 2 ANP D 1 401 376 ANP ANP . M 3 MG D 1 402 377 MG MG . N 2 ANP E 1 401 376 ANP ANP . O 3 MG E 1 402 377 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 2 134.425 151.918 92.246 1 39.34 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . F 2 133.857 152.678 90.974 1 37.51 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . F 2 133.931 150.439 92.249 1 38.16 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . F 2 135.998 151.974 92.284 1 37.96 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . F 2 132.893 153.721 93.682 1 35.27 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . F 2 132.269 154.177 92.316 1 40.55 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . F 2 131.674 153.575 94.588 1 37.26 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . F 2 133.84 152.42 93.669 1 33.23 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . F 2 133.211 156.176 94.745 1 29.51 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . F 2 133.363 157.038 93.48 1 35.89 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . F 2 131.69 156 95.025 1 32.44 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . F 2 133.773 154.821 94.268 1 32.88 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . F 2 134.022 156.61 96.059 1 38.44 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . F 2 135.062 157.562 96.069 1 38.3 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . F 2 136.33 157.088 96.757 1 39.93 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . F 2 137.257 158.186 96.732 1 40.48 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . F 2 136.192 156.768 98.243 1 35.83 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . F 2 137.332 156.036 98.694 1 38.11 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . F 2 136.247 158.152 98.875 1 38.11 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . F 2 137.037 158.192 100.055 1 43.12 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . F 2 136.961 159.023 97.862 1 36.97 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . F 2 136.096 160.122 97.551 1 37.2 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . F 2 134.772 160.07 97.795 1 40.99 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . F 2 134.313 161.237 98.115 1 42.87 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . F 2 135.332 162.104 98.1 1 40.74 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . F 2 135.446 163.455 98.364 1 41.94 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . F 2 134.33 164.175 98.739 1 44.69 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . F 2 136.631 164.025 98.253 1 38.1 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . F 2 137.683 163.33 97.904 1 37.08 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . F 2 137.621 162.053 97.654 1 36.31 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . F 2 136.476 161.41 97.739 1 36.77 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #