data_5OOE # _model_server_result.job_id 0cVxUjdroxDdt2AwgRm3sQ _model_server_result.datetime_utc '2025-02-26 19:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ooe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 5OOE # _exptl.entry_id 5OOE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OOE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C GLU 72 B GLU 72 1_555 B N HIC 73 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C HIC 73 B HIC 73 1_555 B N GLY 74 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C GLU 72 C GLU 72 1_555 C N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C HIC 73 C HIC 73 1_555 C N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 E C GLU 72 E GLU 72 1_555 E N HIC 73 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 E C HIC 73 E HIC 73 1_555 E N GLY 74 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 F O1G ANP . A ANP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc2 F O1B ANP . A ANP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 H O1G ANP . B ANP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc4 H O1B ANP . B ANP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc5 J O1G ANP . C ANP 401 1_555 K MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc6 J O1B ANP . C ANP 401 1_555 K MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc7 L O1G ANP . D ANP 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc8 L O1B ANP . D ANP 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc9 N O1G ANP . E ANP 401 1_555 O MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc10 N O1B ANP . E ANP 401 1_555 O MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OOE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ANP A 1 401 376 ANP ANP . G 3 MG A 1 402 377 MG MG . H 2 ANP B 1 401 376 ANP ANP . I 3 MG B 1 402 377 MG MG . J 2 ANP C 1 401 376 ANP ANP . K 3 MG C 1 402 377 MG MG . L 2 ANP D 1 401 376 ANP ANP . M 3 MG D 1 402 377 MG MG . N 2 ANP E 1 401 376 ANP ANP . O 3 MG E 1 402 377 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . J 2 134.143 144.657 147.04 1 38.69 ? PG ANP 401 C 1 HETATM 2 O O1G ANP . . . J 2 133.299 145.082 145.765 1 36.98 ? O1G ANP 401 C 1 HETATM 3 O O2G ANP . . . J 2 134.367 143.114 147.042 1 39.69 ? O2G ANP 401 C 1 HETATM 4 O O3G ANP . . . J 2 135.523 145.413 147.081 1 37.73 ? O3G ANP 401 C 1 HETATM 5 P PB ANP . . . J 2 131.96 145.58 148.469 1 29.05 ? PB ANP 401 C 1 HETATM 6 O O1B ANP . . . J 2 131.203 145.708 147.101 1 39.65 ? O1B ANP 401 C 1 HETATM 7 O O2B ANP . . . J 2 130.934 144.902 149.372 1 34.48 ? O2B ANP 401 C 1 HETATM 8 N N3B ANP . . . J 2 133.391 144.843 148.46 1 31.61 ? N3B ANP 401 C 1 HETATM 9 P PA ANP . . . J 2 131.139 147.915 149.53 1 28.59 ? PA ANP 401 C 1 HETATM 10 O O1A ANP . . . J 2 130.891 148.755 148.265 1 32.79 ? O1A ANP 401 C 1 HETATM 11 O O2A ANP . . . J 2 129.858 147.075 149.806 1 29.26 ? O2A ANP 401 C 1 HETATM 12 O O3A ANP . . . J 2 132.251 146.957 149.056 1 29.76 ? O3A ANP 401 C 1 HETATM 13 O O5' ANP . . . J 2 131.665 148.667 150.847 1 33.53 ? O5' ANP 401 C 1 HETATM 14 C C5' ANP . . . J 2 132.166 149.985 150.859 1 35.54 ? C5' ANP 401 C 1 HETATM 15 C C4' ANP . . . J 2 133.51 150.131 151.55 1 35.3 ? C4' ANP 401 C 1 HETATM 16 O O4' ANP . . . J 2 133.846 151.528 151.527 1 40.2 ? O4' ANP 401 C 1 HETATM 17 C C3' ANP . . . J 2 133.526 149.782 153.037 1 31.13 ? C3' ANP 401 C 1 HETATM 18 O O3' ANP . . . J 2 134.873 149.639 153.491 1 37.89 ? O3' ANP 401 C 1 HETATM 19 C C2' ANP . . . J 2 132.953 151.043 153.667 1 32.97 ? C2' ANP 401 C 1 HETATM 20 O O2' ANP . . . J 2 133.637 151.434 154.85 1 41.17 ? O2' ANP 401 C 1 HETATM 21 C C1' ANP . . . J 2 133.202 152.143 152.655 1 34.97 ? C1' ANP 401 C 1 HETATM 22 N N9 ANP . . . J 2 131.937 152.736 152.341 1 35 ? N9 ANP 401 C 1 HETATM 23 C C8 ANP . . . J 2 130.776 152.095 152.581 1 37.53 ? C8 ANP 401 C 1 HETATM 24 N N7 ANP . . . J 2 129.842 152.932 152.899 1 38.87 ? N7 ANP 401 C 1 HETATM 25 C C5 ANP . . . J 2 130.362 154.164 152.886 1 36.67 ? C5 ANP 401 C 1 HETATM 26 C C6 ANP . . . J 2 129.856 155.422 153.149 1 38.68 ? C6 ANP 401 C 1 HETATM 27 N N6 ANP . . . J 2 128.535 155.564 153.52 1 43.45 ? N6 ANP 401 C 1 HETATM 28 N N1 ANP . . . J 2 130.661 156.463 153.04 1 35.44 ? N1 ANP 401 C 1 HETATM 29 C C2 ANP . . . J 2 131.913 156.314 152.695 1 32.7 ? C2 ANP 401 C 1 HETATM 30 N N3 ANP . . . J 2 132.432 155.147 152.446 1 32.76 ? N3 ANP 401 C 1 HETATM 31 C C4 ANP . . . J 2 131.698 154.057 152.529 1 32.73 ? C4 ANP 401 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #