data_5OOE # _model_server_result.job_id KNk3JsUA6rDWz82xSQ6DCA _model_server_result.datetime_utc '2025-02-26 19:41:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ooe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":401}' # _entry.id 5OOE # _exptl.entry_id 5OOE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OOE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C GLU 72 B GLU 72 1_555 B N HIC 73 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C HIC 73 B HIC 73 1_555 B N GLY 74 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 C C GLU 72 C GLU 72 1_555 C N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C HIC 73 C HIC 73 1_555 C N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 E C GLU 72 E GLU 72 1_555 E N HIC 73 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 E C HIC 73 E HIC 73 1_555 E N GLY 74 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 F O1G ANP . A ANP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc2 F O1B ANP . A ANP 401 1_555 G MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 H O1G ANP . B ANP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc4 H O1B ANP . B ANP 401 1_555 I MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc5 J O1G ANP . C ANP 401 1_555 K MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc6 J O1B ANP . C ANP 401 1_555 K MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc7 L O1G ANP . D ANP 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc8 L O1B ANP . D ANP 401 1_555 M MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc9 N O1G ANP . E ANP 401 1_555 O MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc10 N O1B ANP . E ANP 401 1_555 O MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5OOE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ANP A 1 401 376 ANP ANP . G 3 MG A 1 402 377 MG MG . H 2 ANP B 1 401 376 ANP ANP . I 3 MG B 1 402 377 MG MG . J 2 ANP C 1 401 376 ANP ANP . K 3 MG C 1 402 377 MG MG . L 2 ANP D 1 401 376 ANP ANP . M 3 MG D 1 402 377 MG MG . N 2 ANP E 1 401 376 ANP ANP . O 3 MG E 1 402 377 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . L 2 162.401 153.67 174.54 1 43.75 ? PG ANP 401 D 1 HETATM 2 O O1G ANP . . . L 2 163.32 153.469 173.262 1 44.54 ? O1G ANP 401 D 1 HETATM 3 O O2G ANP . . . L 2 161.827 155.121 174.561 1 41.17 ? O2G ANP 401 D 1 HETATM 4 O O3G ANP . . . L 2 161.232 152.616 174.568 1 41.15 ? O3G ANP 401 D 1 HETATM 5 P PB ANP . . . L 2 164.738 153.258 175.964 1 35.61 ? PB ANP 401 D 1 HETATM 6 O O1B ANP . . . L 2 165.505 153.326 174.596 1 42 ? O1B ANP 401 D 1 HETATM 7 O O2B ANP . . . L 2 165.58 154.143 176.878 1 38.09 ? O2B ANP 401 D 1 HETATM 8 N N3B ANP . . . L 2 163.176 153.645 175.96 1 38.48 ? N3B ANP 401 D 1 HETATM 9 P PA ANP . . . L 2 166.076 151.161 176.997 1 32.37 ? PA ANP 401 D 1 HETATM 10 O O1A ANP . . . L 2 166.511 150.418 175.723 1 36.7 ? O1A ANP 401 D 1 HETATM 11 O O2A ANP . . . L 2 167.128 152.271 177.288 1 36.71 ? O2A ANP 401 D 1 HETATM 12 O O3A ANP . . . L 2 164.773 151.843 176.532 1 35.07 ? O3A ANP 401 D 1 HETATM 13 O O5' ANP . . . L 2 165.738 150.291 178.303 1 39.32 ? O5' ANP 401 D 1 HETATM 14 C C5' ANP . . . L 2 165.554 148.893 178.297 1 39.08 ? C5' ANP 401 D 1 HETATM 15 C C4' ANP . . . L 2 164.28 148.432 178.982 1 40.13 ? C4' ANP 401 D 1 HETATM 16 O O4' ANP . . . L 2 164.276 146.996 178.94 1 40.67 ? O4' ANP 401 D 1 HETATM 17 C C3' ANP . . . L 2 164.184 148.748 180.473 1 34.44 ? C3' ANP 401 D 1 HETATM 18 O O3' ANP . . . L 2 162.841 148.571 180.925 1 36.23 ? O3' ANP 401 D 1 HETATM 19 C C2' ANP . . . L 2 165.033 147.646 181.089 1 40.57 ? C2' ANP 401 D 1 HETATM 20 O O2' ANP . . . L 2 164.458 147.093 182.265 1 45.78 ? O2' ANP 401 D 1 HETATM 21 C C1' ANP . . . L 2 165.045 146.532 180.063 1 37.36 ? C1' ANP 401 D 1 HETATM 22 N N9 ANP . . . L 2 166.412 146.25 179.744 1 36.79 ? N9 ANP 401 D 1 HETATM 23 C C8 ANP . . . L 2 167.394 147.138 179.996 1 40.7 ? C8 ANP 401 D 1 HETATM 24 N N7 ANP . . . L 2 168.496 146.536 180.306 1 43.03 ? N7 ANP 401 D 1 HETATM 25 C C5 ANP . . . L 2 168.274 145.217 180.276 1 40.26 ? C5 ANP 401 D 1 HETATM 26 C C6 ANP . . . L 2 169.056 144.106 180.524 1 40.81 ? C6 ANP 401 D 1 HETATM 27 N N6 ANP . . . L 2 170.375 144.268 180.897 1 44.79 ? N6 ANP 401 D 1 HETATM 28 N N1 ANP . . . L 2 168.514 142.909 180.4 1 35.58 ? N1 ANP 401 D 1 HETATM 29 C C2 ANP . . . L 2 167.261 142.77 180.053 1 35.79 ? C2 ANP 401 D 1 HETATM 30 N N3 ANP . . . L 2 166.486 143.789 179.817 1 34.97 ? N3 ANP 401 D 1 HETATM 31 C C4 ANP . . . L 2 166.95 145.018 179.916 1 34.07 ? C4 ANP 401 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #