data_5OOG # _model_server_result.job_id ddNLIOl2qBzLlrkdBmdmKg _model_server_result.datetime_utc '2024-11-25 08:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5OOG # _exptl.entry_id 5OOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OOG _cell.length_a 40.261 _cell.length_b 49.474 _cell.length_c 107.612 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 168 n n C1 C2 GOL sing 169 n n C1 H11 GOL sing 170 n n C1 H12 GOL sing 171 n n O1 HO1 GOL sing 172 n n C2 O2 GOL sing 173 n n C2 C3 GOL sing 174 n n C2 H2 GOL sing 175 n n O2 HO2 GOL sing 176 n n C3 O3 GOL sing 177 n n C3 H31 GOL sing 178 n n C3 H32 GOL sing 179 n n O3 HO3 GOL sing 180 n n # _atom_sites.entry_id 5OOG _atom_sites.fract_transf_matrix[1][1] 0.024838 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A0B A 1 601 1 A0B XXX . C 3 GOL A 1 602 600 GOL GOL . D 4 PO4 A 1 603 602 PO4 PO4 . E 5 NAP A 1 604 500 NAP NAP . F 6 HOH A 1 701 229 HOH HOH . F 6 HOH A 2 702 294 HOH HOH . F 6 HOH A 3 703 180 HOH HOH . F 6 HOH A 4 704 203 HOH HOH . F 6 HOH A 5 705 227 HOH HOH . F 6 HOH A 6 706 266 HOH HOH . F 6 HOH A 7 707 275 HOH HOH . F 6 HOH A 8 708 56 HOH HOH . F 6 HOH A 9 709 165 HOH HOH . F 6 HOH A 10 710 43 HOH HOH . F 6 HOH A 11 711 152 HOH HOH . F 6 HOH A 12 712 76 HOH HOH . F 6 HOH A 13 713 126 HOH HOH . F 6 HOH A 14 714 54 HOH HOH . F 6 HOH A 15 715 67 HOH HOH . F 6 HOH A 16 716 148 HOH HOH . F 6 HOH A 17 717 195 HOH HOH . F 6 HOH A 18 718 238 HOH HOH . F 6 HOH A 19 719 53 HOH HOH . F 6 HOH A 20 720 72 HOH HOH . F 6 HOH A 21 721 121 HOH HOH . F 6 HOH A 22 722 239 HOH HOH . F 6 HOH A 23 723 204 HOH HOH . F 6 HOH A 24 724 259 HOH HOH . F 6 HOH A 25 725 105 HOH HOH . F 6 HOH A 26 726 112 HOH HOH . F 6 HOH A 27 727 71 HOH HOH . F 6 HOH A 28 728 26 HOH HOH . F 6 HOH A 29 729 57 HOH HOH . F 6 HOH A 30 730 75 HOH HOH . F 6 HOH A 31 731 50 HOH HOH . F 6 HOH A 32 732 111 HOH HOH . F 6 HOH A 33 733 202 HOH HOH . F 6 HOH A 34 734 41 HOH HOH . F 6 HOH A 35 735 155 HOH HOH . F 6 HOH A 36 736 21 HOH HOH . F 6 HOH A 37 737 115 HOH HOH . F 6 HOH A 38 738 32 HOH HOH . F 6 HOH A 39 739 265 HOH HOH . F 6 HOH A 40 740 124 HOH HOH . F 6 HOH A 41 741 48 HOH HOH . F 6 HOH A 42 742 298 HOH HOH . F 6 HOH A 43 743 8 HOH HOH . F 6 HOH A 44 744 243 HOH HOH . F 6 HOH A 45 745 86 HOH HOH . F 6 HOH A 46 746 55 HOH HOH . F 6 HOH A 47 747 213 HOH HOH . F 6 HOH A 48 748 94 HOH HOH . F 6 HOH A 49 749 102 HOH HOH . F 6 HOH A 50 750 120 HOH HOH . F 6 HOH A 51 751 302 HOH HOH . F 6 HOH A 52 752 11 HOH HOH . F 6 HOH A 53 753 272 HOH HOH . F 6 HOH A 54 754 66 HOH HOH . F 6 HOH A 55 755 230 HOH HOH . F 6 HOH A 56 756 15 HOH HOH . F 6 HOH A 57 757 42 HOH HOH . F 6 HOH A 58 758 205 HOH HOH . F 6 HOH A 59 759 260 HOH HOH . F 6 HOH A 60 760 262 HOH HOH . F 6 HOH A 61 761 216 HOH HOH . F 6 HOH A 62 762 24 HOH HOH . F 6 HOH A 63 763 3 HOH HOH . F 6 HOH A 64 764 46 HOH HOH . F 6 HOH A 65 765 117 HOH HOH . F 6 HOH A 66 766 59 HOH HOH . F 6 HOH A 67 767 77 HOH HOH . F 6 HOH A 68 768 85 HOH HOH . F 6 HOH A 69 769 31 HOH HOH . F 6 HOH A 70 770 211 HOH HOH . F 6 HOH A 71 771 100 HOH HOH . F 6 HOH A 72 772 68 HOH HOH . F 6 HOH A 73 773 81 HOH HOH . F 6 HOH A 74 774 190 HOH HOH . F 6 HOH A 75 775 197 HOH HOH . F 6 HOH A 76 776 74 HOH HOH . F 6 HOH A 77 777 169 HOH HOH . F 6 HOH A 78 778 63 HOH HOH . F 6 HOH A 79 779 12 HOH HOH . F 6 HOH A 80 780 37 HOH HOH . F 6 HOH A 81 781 61 HOH HOH . F 6 HOH A 82 782 69 HOH HOH . F 6 HOH A 83 783 62 HOH HOH . F 6 HOH A 84 784 40 HOH HOH . F 6 HOH A 85 785 14 HOH HOH . F 6 HOH A 86 786 245 HOH HOH . F 6 HOH A 87 787 98 HOH HOH . F 6 HOH A 88 788 45 HOH HOH . F 6 HOH A 89 789 13 HOH HOH . F 6 HOH A 90 790 70 HOH HOH . F 6 HOH A 91 791 118 HOH HOH . F 6 HOH A 92 792 9 HOH HOH . F 6 HOH A 93 793 142 HOH HOH . F 6 HOH A 94 794 122 HOH HOH . F 6 HOH A 95 795 116 HOH HOH . F 6 HOH A 96 796 20 HOH HOH . F 6 HOH A 97 797 159 HOH HOH . F 6 HOH A 98 798 194 HOH HOH . F 6 HOH A 99 799 301 HOH HOH . F 6 HOH A 100 800 136 HOH HOH . F 6 HOH A 101 801 175 HOH HOH . F 6 HOH A 102 802 35 HOH HOH . F 6 HOH A 103 803 39 HOH HOH . F 6 HOH A 104 804 177 HOH HOH . F 6 HOH A 105 805 236 HOH HOH . F 6 HOH A 106 806 267 HOH HOH . F 6 HOH A 107 807 264 HOH HOH . F 6 HOH A 108 808 38 HOH HOH . F 6 HOH A 109 809 27 HOH HOH . F 6 HOH A 110 810 16 HOH HOH . F 6 HOH A 111 811 130 HOH HOH . F 6 HOH A 112 812 19 HOH HOH . F 6 HOH A 113 813 65 HOH HOH . F 6 HOH A 114 814 7 HOH HOH . F 6 HOH A 115 815 145 HOH HOH . F 6 HOH A 116 816 225 HOH HOH . F 6 HOH A 117 817 164 HOH HOH . F 6 HOH A 118 818 60 HOH HOH . F 6 HOH A 119 819 123 HOH HOH . F 6 HOH A 120 820 160 HOH HOH . F 6 HOH A 121 821 22 HOH HOH . F 6 HOH A 122 822 36 HOH HOH . F 6 HOH A 123 823 79 HOH HOH . F 6 HOH A 124 824 18 HOH HOH . F 6 HOH A 125 825 2 HOH HOH . F 6 HOH A 126 826 109 HOH HOH . F 6 HOH A 127 827 6 HOH HOH . F 6 HOH A 128 828 210 HOH HOH . F 6 HOH A 129 829 23 HOH HOH . F 6 HOH A 130 830 233 HOH HOH . F 6 HOH A 131 831 114 HOH HOH . F 6 HOH A 132 832 1 HOH HOH . F 6 HOH A 133 833 166 HOH HOH . F 6 HOH A 134 834 153 HOH HOH . F 6 HOH A 135 835 51 HOH HOH . F 6 HOH A 136 836 4 HOH HOH . F 6 HOH A 137 837 34 HOH HOH . F 6 HOH A 138 838 270 HOH HOH . F 6 HOH A 139 839 101 HOH HOH . F 6 HOH A 140 840 82 HOH HOH . F 6 HOH A 141 841 108 HOH HOH . F 6 HOH A 142 842 33 HOH HOH . F 6 HOH A 143 843 87 HOH HOH . F 6 HOH A 144 844 171 HOH HOH . F 6 HOH A 145 845 170 HOH HOH . F 6 HOH A 146 846 5 HOH HOH . F 6 HOH A 147 847 84 HOH HOH . F 6 HOH A 148 848 49 HOH HOH . F 6 HOH A 149 849 271 HOH HOH . F 6 HOH A 150 850 220 HOH HOH . F 6 HOH A 151 851 135 HOH HOH . F 6 HOH A 152 852 151 HOH HOH . F 6 HOH A 153 853 64 HOH HOH . F 6 HOH A 154 854 80 HOH HOH . F 6 HOH A 155 855 129 HOH HOH . F 6 HOH A 156 856 249 HOH HOH . F 6 HOH A 157 857 144 HOH HOH . F 6 HOH A 158 858 149 HOH HOH . F 6 HOH A 159 859 83 HOH HOH . F 6 HOH A 160 860 10 HOH HOH . F 6 HOH A 161 861 131 HOH HOH . F 6 HOH A 162 862 52 HOH HOH . F 6 HOH A 163 863 209 HOH HOH . F 6 HOH A 164 864 17 HOH HOH . F 6 HOH A 165 865 208 HOH HOH . F 6 HOH A 166 866 172 HOH HOH . F 6 HOH A 167 867 28 HOH HOH . F 6 HOH A 168 868 47 HOH HOH . F 6 HOH A 169 869 278 HOH HOH . F 6 HOH A 170 870 137 HOH HOH . F 6 HOH A 171 871 217 HOH HOH . F 6 HOH A 172 872 232 HOH HOH . F 6 HOH A 173 873 286 HOH HOH . F 6 HOH A 174 874 226 HOH HOH . F 6 HOH A 175 875 285 HOH HOH . F 6 HOH A 176 876 30 HOH HOH . F 6 HOH A 177 877 25 HOH HOH . F 6 HOH A 178 878 44 HOH HOH . F 6 HOH A 179 879 158 HOH HOH . F 6 HOH A 180 880 234 HOH HOH . F 6 HOH A 181 881 247 HOH HOH . F 6 HOH A 182 882 58 HOH HOH . F 6 HOH A 183 883 297 HOH HOH . F 6 HOH A 184 884 29 HOH HOH . F 6 HOH A 185 885 257 HOH HOH . F 6 HOH A 186 886 277 HOH HOH . F 6 HOH A 187 887 215 HOH HOH . F 6 HOH A 188 888 167 HOH HOH . F 6 HOH A 189 889 246 HOH HOH . F 6 HOH A 190 890 188 HOH HOH . F 6 HOH A 191 891 140 HOH HOH . F 6 HOH A 192 892 73 HOH HOH . F 6 HOH A 193 893 273 HOH HOH . F 6 HOH A 194 894 113 HOH HOH . F 6 HOH A 195 895 258 HOH HOH . F 6 HOH A 196 896 125 HOH HOH . F 6 HOH A 197 897 250 HOH HOH . F 6 HOH A 198 898 269 HOH HOH . F 6 HOH A 199 899 187 HOH HOH . F 6 HOH A 200 900 255 HOH HOH . F 6 HOH A 201 901 295 HOH HOH . F 6 HOH A 202 902 200 HOH HOH . F 6 HOH A 203 903 214 HOH HOH . F 6 HOH A 204 904 251 HOH HOH . F 6 HOH A 205 905 296 HOH HOH . F 6 HOH A 206 906 305 HOH HOH . F 6 HOH A 207 907 221 HOH HOH . F 6 HOH A 208 908 127 HOH HOH . F 6 HOH A 209 909 206 HOH HOH . F 6 HOH A 210 910 254 HOH HOH . F 6 HOH A 211 911 99 HOH HOH . F 6 HOH A 212 912 154 HOH HOH . F 6 HOH A 213 913 289 HOH HOH . F 6 HOH A 214 914 231 HOH HOH . F 6 HOH A 215 915 143 HOH HOH . F 6 HOH A 216 916 304 HOH HOH . F 6 HOH A 217 917 97 HOH HOH . F 6 HOH A 218 918 132 HOH HOH . F 6 HOH A 219 919 241 HOH HOH . F 6 HOH A 220 920 128 HOH HOH . F 6 HOH A 221 921 237 HOH HOH . F 6 HOH A 222 922 306 HOH HOH . F 6 HOH A 223 923 179 HOH HOH . F 6 HOH A 224 924 212 HOH HOH . F 6 HOH A 225 925 290 HOH HOH . F 6 HOH A 226 926 78 HOH HOH . F 6 HOH A 227 927 181 HOH HOH . F 6 HOH A 228 928 96 HOH HOH . F 6 HOH A 229 929 189 HOH HOH . F 6 HOH A 230 930 191 HOH HOH . F 6 HOH A 231 931 183 HOH HOH . F 6 HOH A 232 932 292 HOH HOH . F 6 HOH A 233 933 110 HOH HOH . F 6 HOH A 234 934 89 HOH HOH . F 6 HOH A 235 935 284 HOH HOH . F 6 HOH A 236 936 139 HOH HOH . F 6 HOH A 237 937 235 HOH HOH . F 6 HOH A 238 938 192 HOH HOH . F 6 HOH A 239 939 274 HOH HOH . F 6 HOH A 240 940 244 HOH HOH . F 6 HOH A 241 941 282 HOH HOH . F 6 HOH A 242 942 103 HOH HOH . F 6 HOH A 243 943 119 HOH HOH . F 6 HOH A 244 944 283 HOH HOH . F 6 HOH A 245 945 106 HOH HOH . F 6 HOH A 246 946 242 HOH HOH . F 6 HOH A 247 947 196 HOH HOH . F 6 HOH A 248 948 141 HOH HOH . F 6 HOH A 249 949 107 HOH HOH . F 6 HOH A 250 950 228 HOH HOH . F 6 HOH A 251 951 248 HOH HOH . F 6 HOH A 252 952 162 HOH HOH . F 6 HOH A 253 953 300 HOH HOH . F 6 HOH A 254 954 174 HOH HOH . F 6 HOH A 255 955 134 HOH HOH . F 6 HOH A 256 956 133 HOH HOH . F 6 HOH A 257 957 146 HOH HOH . F 6 HOH A 258 958 92 HOH HOH . F 6 HOH A 259 959 288 HOH HOH . F 6 HOH A 260 960 240 HOH HOH . F 6 HOH A 261 961 95 HOH HOH . F 6 HOH A 262 962 293 HOH HOH . F 6 HOH A 263 963 104 HOH HOH . F 6 HOH A 264 964 176 HOH HOH . F 6 HOH A 265 965 261 HOH HOH . F 6 HOH A 266 966 90 HOH HOH . F 6 HOH A 267 967 93 HOH HOH . F 6 HOH A 268 968 303 HOH HOH . F 6 HOH A 269 969 138 HOH HOH . F 6 HOH A 270 970 186 HOH HOH . F 6 HOH A 271 971 163 HOH HOH . F 6 HOH A 272 972 156 HOH HOH . F 6 HOH A 273 973 161 HOH HOH . F 6 HOH A 274 974 222 HOH HOH . F 6 HOH A 275 975 178 HOH HOH . F 6 HOH A 276 976 280 HOH HOH . F 6 HOH A 277 977 263 HOH HOH . F 6 HOH A 278 978 201 HOH HOH . F 6 HOH A 279 979 185 HOH HOH . F 6 HOH A 280 980 207 HOH HOH . F 6 HOH A 281 981 88 HOH HOH . F 6 HOH A 282 982 219 HOH HOH . F 6 HOH A 283 983 276 HOH HOH . F 6 HOH A 284 984 182 HOH HOH . F 6 HOH A 285 985 157 HOH HOH . F 6 HOH A 286 986 193 HOH HOH . F 6 HOH A 287 987 256 HOH HOH . F 6 HOH A 288 988 147 HOH HOH . F 6 HOH A 289 989 279 HOH HOH . F 6 HOH A 290 990 198 HOH HOH . F 6 HOH A 291 991 150 HOH HOH . F 6 HOH A 292 992 224 HOH HOH . F 6 HOH A 293 993 199 HOH HOH . F 6 HOH A 294 994 168 HOH HOH . F 6 HOH A 295 995 91 HOH HOH . F 6 HOH A 296 996 173 HOH HOH . F 6 HOH A 297 997 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 25.661 -15.703 21.722 0.61 10.79 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . C 3 24.771 -15.914 22.827 0.61 14.97 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . C 3 27.066 -16.107 22.159 0.61 13.63 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . C 3 27.087 -17.5 22.493 0.61 14.55 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . C 3 28.052 -15.866 21.044 0.61 14.69 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . C 3 29.35 -15.945 21.617 0.61 20.29 ? O3 GOL 602 A 1 HETATM 7 H H11 GOL . . . C 3 25.648 -14.652 21.426 0.61 12.94 ? H11 GOL 602 A 1 HETATM 8 H H12 GOL . . . C 3 25.347 -16.307 20.868 0.61 12.94 ? H12 GOL 602 A 1 HETATM 9 H HO1 GOL . . . C 3 23.873 -15.663 22.57 0.61 17.97 ? HO1 GOL 602 A 1 HETATM 10 H H2 GOL . . . C 3 27.357 -15.505 23.031 0.61 16.36 ? H2 GOL 602 A 1 HETATM 11 H HO2 GOL . . . C 3 26.84 -18.021 21.716 0.61 17.46 ? HO2 GOL 602 A 1 HETATM 12 H H31 GOL . . . C 3 27.891 -14.88 20.603 0.61 17.63 ? H31 GOL 602 A 1 HETATM 13 H H32 GOL . . . C 3 27.935 -16.622 20.265 0.61 17.63 ? H32 GOL 602 A 1 HETATM 14 H HO3 GOL . . . C 3 30.015 -15.794 20.932 0.61 24.35 ? HO3 GOL 602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #