data_5OON # _model_server_result.job_id rSqjhPsMD_bBtPMfybrGoQ _model_server_result.datetime_utc '2024-11-27 22:57:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 5OON # _exptl.entry_id 5OON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OON _cell.length_a 113.26 _cell.length_b 145 _cell.length_c 40.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OON _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 147 A CYS 138 1_555 C HG HG . A HG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.972 ? metalc ? metalc2 A O CYS 171 A CYS 162 1_555 B HG HG . A HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc3 A SG CYS 171 A CYS 162 1_555 B HG HG . A HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc4 A SG CYS 174 A CYS 165 1_555 B HG HG . A HG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 5OON _atom_sites.fract_transf_matrix[1][1] 0.008829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HG A 1 301 1 HG HG . C 2 HG A 1 302 2 HG HG . D 3 TRS A 1 303 1 TRS TRS . E 4 OLC A 1 304 2 OLC OLC . F 4 OLC A 1 305 3 OLC OLC . G 5 HOH A 1 401 5 HOH HOH . G 5 HOH A 2 402 3 HOH HOH . G 5 HOH A 3 403 7 HOH HOH . G 5 HOH A 4 404 2 HOH HOH . G 5 HOH A 5 405 6 HOH HOH . G 5 HOH A 6 406 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . E 4 29.058 25.81 11.833 0.93 53.04 ? C18 OLC 304 A 1 HETATM 2 C C10 OLC . . . E 4 22.578 21.69 7.69 0.93 45.12 ? C10 OLC 304 A 1 HETATM 3 C C9 OLC . . . E 4 21.492 21.104 7.141 0.93 42.09 ? C9 OLC 304 A 1 HETATM 4 C C17 OLC . . . E 4 28.991 25.155 10.467 0.93 43.35 ? C17 OLC 304 A 1 HETATM 5 C C11 OLC . . . E 4 22.458 22.645 8.863 0.93 43.35 ? C11 OLC 304 A 1 HETATM 6 C C8 OLC . . . E 4 20.116 21.399 7.697 0.93 46.55 ? C8 OLC 304 A 1 HETATM 7 C C24 OLC . . . E 4 10.035 24.735 6.79 0.93 84.45 ? C24 OLC 304 A 1 HETATM 8 C C16 OLC . . . E 4 27.607 25.338 9.887 0.93 47.87 ? C16 OLC 304 A 1 HETATM 9 C C12 OLC . . . E 4 23.65 22.438 9.772 0.93 44.17 ? C12 OLC 304 A 1 HETATM 10 C C7 OLC . . . E 4 19.289 22.131 6.665 0.93 55.1 ? C7 OLC 304 A 1 HETATM 11 C C15 OLC . . . E 4 26.577 24.612 10.732 0.93 50.3 ? C15 OLC 304 A 1 HETATM 12 C C13 OLC . . . E 4 24.271 23.749 10.205 0.93 45.02 ? C13 OLC 304 A 1 HETATM 13 C C6 OLC . . . E 4 17.913 22.41 7.233 0.93 54.78 ? C6 OLC 304 A 1 HETATM 14 C C14 OLC . . . E 4 25.738 23.736 9.817 0.93 50.13 ? C14 OLC 304 A 1 HETATM 15 C C5 OLC . . . E 4 17.826 23.854 7.664 0.93 58.8 ? C5 OLC 304 A 1 HETATM 16 C C4 OLC . . . E 4 17.393 24.712 6.496 0.93 63.42 ? C4 OLC 304 A 1 HETATM 17 C C3 OLC . . . E 4 15.94 25.087 6.678 0.93 66.27 ? C3 OLC 304 A 1 HETATM 18 C C2 OLC . . . E 4 15.736 26.507 6.204 0.93 68.38 ? C2 OLC 304 A 1 HETATM 19 C C21 OLC . . . E 4 12.246 25.806 6.57 0.93 78.58 ? C21 OLC 304 A 1 HETATM 20 C C1 OLC . . . E 4 14.292 26.672 5.794 0.93 77.15 ? C1 OLC 304 A 1 HETATM 21 C C22 OLC . . . E 4 11.1 25.181 5.814 0.93 78.02 ? C22 OLC 304 A 1 HETATM 22 O O19 OLC . . . E 4 13.87 27.745 5.408 0.93 79.86 ? O19 OLC 304 A 1 HETATM 23 O O25 OLC . . . E 4 8.876 25.515 6.596 0.93 92.34 ? O25 OLC 304 A 1 HETATM 24 O O23 OLC . . . E 4 10.558 26.138 4.933 0.93 84.52 ? O23 OLC 304 A 1 HETATM 25 O O20 OLC . . . E 4 13.439 25.563 5.866 0.93 78.84 ? O20 OLC 304 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #