data_5OOP # _model_server_result.job_id PZ_OCXYrUGqy9ZDw24yFKw _model_server_result.datetime_utc '2024-11-22 10:59:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5OOP # _exptl.entry_id 5OOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.35 _cell.angle_gamma 90 _cell.entry_id 5OOP _cell.length_a 45.07 _cell.length_b 65.897 _cell.length_c 54.642 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5OOP _atom_sites.fract_transf_matrix[1][1] 0.022188 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004455 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 301 1272 ANP ANP . C 3 HOH A 1 401 2043 HOH HOH . C 3 HOH A 2 402 2098 HOH HOH . C 3 HOH A 3 403 2036 HOH HOH . C 3 HOH A 4 404 2168 HOH HOH . C 3 HOH A 5 405 2029 HOH HOH . C 3 HOH A 6 406 2151 HOH HOH . C 3 HOH A 7 407 2169 HOH HOH . C 3 HOH A 8 408 2196 HOH HOH . C 3 HOH A 9 409 2144 HOH HOH . C 3 HOH A 10 410 2180 HOH HOH . C 3 HOH A 11 411 2138 HOH HOH . C 3 HOH A 12 412 2132 HOH HOH . C 3 HOH A 13 413 2097 HOH HOH . C 3 HOH A 14 414 2113 HOH HOH . C 3 HOH A 15 415 2165 HOH HOH . C 3 HOH A 16 416 2079 HOH HOH . C 3 HOH A 17 417 2039 HOH HOH . C 3 HOH A 18 418 2120 HOH HOH . C 3 HOH A 19 419 2104 HOH HOH . C 3 HOH A 20 420 2088 HOH HOH . C 3 HOH A 21 421 2170 HOH HOH . C 3 HOH A 22 422 2014 HOH HOH . C 3 HOH A 23 423 2002 HOH HOH . C 3 HOH A 24 424 2019 HOH HOH . C 3 HOH A 25 425 2162 HOH HOH . C 3 HOH A 26 426 2049 HOH HOH . C 3 HOH A 27 427 2035 HOH HOH . C 3 HOH A 28 428 2004 HOH HOH . C 3 HOH A 29 429 2060 HOH HOH . C 3 HOH A 30 430 2177 HOH HOH . C 3 HOH A 31 431 2003 HOH HOH . C 3 HOH A 32 432 2143 HOH HOH . C 3 HOH A 33 433 2176 HOH HOH . C 3 HOH A 34 434 2058 HOH HOH . C 3 HOH A 35 435 2062 HOH HOH . C 3 HOH A 36 436 2066 HOH HOH . C 3 HOH A 37 437 2072 HOH HOH . C 3 HOH A 38 438 2147 HOH HOH . C 3 HOH A 39 439 2122 HOH HOH . C 3 HOH A 40 440 2152 HOH HOH . C 3 HOH A 41 441 2061 HOH HOH . C 3 HOH A 42 442 2050 HOH HOH . C 3 HOH A 43 443 2158 HOH HOH . C 3 HOH A 44 444 2056 HOH HOH . C 3 HOH A 45 445 2022 HOH HOH . C 3 HOH A 46 446 2068 HOH HOH . C 3 HOH A 47 447 2112 HOH HOH . C 3 HOH A 48 448 2047 HOH HOH . C 3 HOH A 49 449 2178 HOH HOH . C 3 HOH A 50 450 2198 HOH HOH . C 3 HOH A 51 451 2100 HOH HOH . C 3 HOH A 52 452 2082 HOH HOH . C 3 HOH A 53 453 2096 HOH HOH . C 3 HOH A 54 454 2052 HOH HOH . C 3 HOH A 55 455 2218 HOH HOH . C 3 HOH A 56 456 2148 HOH HOH . C 3 HOH A 57 457 2012 HOH HOH . C 3 HOH A 58 458 2197 HOH HOH . C 3 HOH A 59 459 2092 HOH HOH . C 3 HOH A 60 460 2217 HOH HOH . C 3 HOH A 61 461 2076 HOH HOH . C 3 HOH A 62 462 2051 HOH HOH . C 3 HOH A 63 463 2001 HOH HOH . C 3 HOH A 64 464 2171 HOH HOH . C 3 HOH A 65 465 2013 HOH HOH . C 3 HOH A 66 466 2034 HOH HOH . C 3 HOH A 67 467 2210 HOH HOH . C 3 HOH A 68 468 2139 HOH HOH . C 3 HOH A 69 469 2077 HOH HOH . C 3 HOH A 70 470 2046 HOH HOH . C 3 HOH A 71 471 2048 HOH HOH . C 3 HOH A 72 472 2065 HOH HOH . C 3 HOH A 73 473 2025 HOH HOH . C 3 HOH A 74 474 2028 HOH HOH . C 3 HOH A 75 475 2118 HOH HOH . C 3 HOH A 76 476 2173 HOH HOH . C 3 HOH A 77 477 2222 HOH HOH . C 3 HOH A 78 478 2160 HOH HOH . C 3 HOH A 79 479 2015 HOH HOH . C 3 HOH A 80 480 2093 HOH HOH . C 3 HOH A 81 481 2123 HOH HOH . C 3 HOH A 82 482 2074 HOH HOH . C 3 HOH A 83 483 2114 HOH HOH . C 3 HOH A 84 484 2045 HOH HOH . C 3 HOH A 85 485 2140 HOH HOH . C 3 HOH A 86 486 2124 HOH HOH . C 3 HOH A 87 487 2117 HOH HOH . C 3 HOH A 88 488 2026 HOH HOH . C 3 HOH A 89 489 2181 HOH HOH . C 3 HOH A 90 490 2128 HOH HOH . C 3 HOH A 91 491 2099 HOH HOH . C 3 HOH A 92 492 2091 HOH HOH . C 3 HOH A 93 493 2102 HOH HOH . C 3 HOH A 94 494 2156 HOH HOH . C 3 HOH A 95 495 2107 HOH HOH . C 3 HOH A 96 496 2037 HOH HOH . C 3 HOH A 97 497 2055 HOH HOH . C 3 HOH A 98 498 2085 HOH HOH . C 3 HOH A 99 499 2157 HOH HOH . C 3 HOH A 100 500 2182 HOH HOH . C 3 HOH A 101 501 2109 HOH HOH . C 3 HOH A 102 502 2032 HOH HOH . C 3 HOH A 103 503 2038 HOH HOH . C 3 HOH A 104 504 2073 HOH HOH . C 3 HOH A 105 505 2166 HOH HOH . C 3 HOH A 106 506 2164 HOH HOH . C 3 HOH A 107 507 2054 HOH HOH . C 3 HOH A 108 508 2064 HOH HOH . C 3 HOH A 109 509 2071 HOH HOH . C 3 HOH A 110 510 2116 HOH HOH . C 3 HOH A 111 511 2111 HOH HOH . C 3 HOH A 112 512 2119 HOH HOH . C 3 HOH A 113 513 2078 HOH HOH . C 3 HOH A 114 514 2030 HOH HOH . C 3 HOH A 115 515 2084 HOH HOH . C 3 HOH A 116 516 2041 HOH HOH . C 3 HOH A 117 517 2172 HOH HOH . C 3 HOH A 118 518 2095 HOH HOH . C 3 HOH A 119 519 2010 HOH HOH . C 3 HOH A 120 520 2191 HOH HOH . C 3 HOH A 121 521 2133 HOH HOH . C 3 HOH A 122 522 2089 HOH HOH . C 3 HOH A 123 523 2103 HOH HOH . C 3 HOH A 124 524 2006 HOH HOH . C 3 HOH A 125 525 2069 HOH HOH . C 3 HOH A 126 526 2201 HOH HOH . C 3 HOH A 127 527 2121 HOH HOH . C 3 HOH A 128 528 2192 HOH HOH . C 3 HOH A 129 529 2075 HOH HOH . C 3 HOH A 130 530 2081 HOH HOH . C 3 HOH A 131 531 2057 HOH HOH . C 3 HOH A 132 532 2193 HOH HOH . C 3 HOH A 133 533 2011 HOH HOH . C 3 HOH A 134 534 2134 HOH HOH . C 3 HOH A 135 535 2067 HOH HOH . C 3 HOH A 136 536 2131 HOH HOH . C 3 HOH A 137 537 2040 HOH HOH . C 3 HOH A 138 538 2146 HOH HOH . C 3 HOH A 139 539 2137 HOH HOH . C 3 HOH A 140 540 2063 HOH HOH . C 3 HOH A 141 541 2161 HOH HOH . C 3 HOH A 142 542 2053 HOH HOH . C 3 HOH A 143 543 2005 HOH HOH . C 3 HOH A 144 544 2110 HOH HOH . C 3 HOH A 145 545 2216 HOH HOH . C 3 HOH A 146 546 2130 HOH HOH . C 3 HOH A 147 547 2213 HOH HOH . C 3 HOH A 148 548 2189 HOH HOH . C 3 HOH A 149 549 2017 HOH HOH . C 3 HOH A 150 550 2087 HOH HOH . C 3 HOH A 151 551 2215 HOH HOH . C 3 HOH A 152 552 2159 HOH HOH . C 3 HOH A 153 553 2044 HOH HOH . C 3 HOH A 154 554 2008 HOH HOH . C 3 HOH A 155 555 2203 HOH HOH . C 3 HOH A 156 556 2221 HOH HOH . C 3 HOH A 157 557 2155 HOH HOH . C 3 HOH A 158 558 2115 HOH HOH . C 3 HOH A 159 559 2194 HOH HOH . C 3 HOH A 160 560 2059 HOH HOH . C 3 HOH A 161 561 2174 HOH HOH . C 3 HOH A 162 562 2141 HOH HOH . C 3 HOH A 163 563 2219 HOH HOH . C 3 HOH A 164 564 2090 HOH HOH . C 3 HOH A 165 565 2007 HOH HOH . C 3 HOH A 166 566 2186 HOH HOH . C 3 HOH A 167 567 2211 HOH HOH . C 3 HOH A 168 568 2184 HOH HOH . C 3 HOH A 169 569 2127 HOH HOH . C 3 HOH A 170 570 2200 HOH HOH . C 3 HOH A 171 571 2202 HOH HOH . C 3 HOH A 172 572 2101 HOH HOH . C 3 HOH A 173 573 2033 HOH HOH . C 3 HOH A 174 574 2009 HOH HOH . C 3 HOH A 175 575 2129 HOH HOH . C 3 HOH A 176 576 2204 HOH HOH . C 3 HOH A 177 577 2183 HOH HOH . C 3 HOH A 178 578 2031 HOH HOH . C 3 HOH A 179 579 2070 HOH HOH . C 3 HOH A 180 580 2175 HOH HOH . C 3 HOH A 181 581 2199 HOH HOH . C 3 HOH A 182 582 2163 HOH HOH . C 3 HOH A 183 583 2220 HOH HOH . C 3 HOH A 184 584 2027 HOH HOH . C 3 HOH A 185 585 2153 HOH HOH . C 3 HOH A 186 586 2206 HOH HOH . C 3 HOH A 187 587 2179 HOH HOH . C 3 HOH A 188 588 2167 HOH HOH . C 3 HOH A 189 589 2023 HOH HOH . C 3 HOH A 190 590 2016 HOH HOH . C 3 HOH A 191 591 2214 HOH HOH . C 3 HOH A 192 592 2024 HOH HOH . C 3 HOH A 193 593 2106 HOH HOH . C 3 HOH A 194 594 2135 HOH HOH . C 3 HOH A 195 595 2108 HOH HOH . C 3 HOH A 196 596 2105 HOH HOH . C 3 HOH A 197 597 2086 HOH HOH . C 3 HOH A 198 598 2142 HOH HOH . C 3 HOH A 199 599 2195 HOH HOH . C 3 HOH A 200 600 2126 HOH HOH . C 3 HOH A 201 601 2212 HOH HOH . C 3 HOH A 202 602 2149 HOH HOH . C 3 HOH A 203 603 2020 HOH HOH . C 3 HOH A 204 604 2205 HOH HOH . C 3 HOH A 205 605 2188 HOH HOH . C 3 HOH A 206 606 2136 HOH HOH . C 3 HOH A 207 607 2150 HOH HOH . C 3 HOH A 208 608 2187 HOH HOH . C 3 HOH A 209 609 2080 HOH HOH . C 3 HOH A 210 610 2094 HOH HOH . C 3 HOH A 211 611 2125 HOH HOH . C 3 HOH A 212 612 2190 HOH HOH . C 3 HOH A 213 613 2018 HOH HOH . C 3 HOH A 214 614 2154 HOH HOH . C 3 HOH A 215 615 2145 HOH HOH . C 3 HOH A 216 616 2083 HOH HOH . C 3 HOH A 217 617 2042 HOH HOH . C 3 HOH A 218 618 2185 HOH HOH . C 3 HOH A 219 619 2208 HOH HOH . C 3 HOH A 220 620 2207 HOH HOH . C 3 HOH A 221 621 2021 HOH HOH . C 3 HOH A 222 622 2209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 9.131 -10.657 11.558 1 91.2 ? PG ANP 301 A 1 HETATM 2 O O1G ANP . . . B 2 9.648 -10.196 10.214 1 100.29 ? O1G ANP 301 A 1 HETATM 3 O O2G ANP . . . B 2 8.814 -12.128 11.698 1 97.13 ? O2G ANP 301 A 1 HETATM 4 O O3G ANP . . . B 2 9.981 -10.179 12.727 1 81 ? O3G ANP 301 A 1 HETATM 5 P PB ANP . . . B 2 6.549 -10.124 12.931 1 80.04 ? PB ANP 301 A 1 HETATM 6 O O1B ANP . . . B 2 5.043 -10.357 12.786 1 75.92 ? O1B ANP 301 A 1 HETATM 7 O O2B ANP . . . B 2 7.335 -11.243 13.541 1 97.06 ? O2B ANP 301 A 1 HETATM 8 N N3B ANP . . . B 2 7.519 -9.978 11.509 1 75.49 ? N3B ANP 301 A 1 HETATM 9 P PA ANP . . . B 2 7.755 -8.559 14.972 1 63.51 ? PA ANP 301 A 1 HETATM 10 O O1A ANP . . . B 2 8.546 -7.262 14.941 1 60.76 ? O1A ANP 301 A 1 HETATM 11 O O2A ANP . . . B 2 8.597 -9.803 15.189 1 79.71 ? O2A ANP 301 A 1 HETATM 12 O O3A ANP . . . B 2 6.73 -8.702 13.736 1 81.38 ? O3A ANP 301 A 1 HETATM 13 O O5' ANP . . . B 2 6.651 -8.712 16.118 1 60.01 ? O5' ANP 301 A 1 HETATM 14 C C5' ANP . . . B 2 5.406 -9.394 16.099 1 59.78 ? C5' ANP 301 A 1 HETATM 15 C C4' ANP . . . B 2 4.287 -8.526 16.669 1 58.33 ? C4' ANP 301 A 1 HETATM 16 O O4' ANP . . . B 2 4.545 -7.897 17.945 1 45.75 ? O4' ANP 301 A 1 HETATM 17 C C3' ANP . . . B 2 3.986 -7.352 15.737 1 58.51 ? C3' ANP 301 A 1 HETATM 18 O O3' ANP . . . B 2 3.199 -7.72 14.607 1 71.72 ? O3' ANP 301 A 1 HETATM 19 C C2' ANP . . . B 2 3.233 -6.393 16.62 1 50.13 ? C2' ANP 301 A 1 HETATM 20 O O2' ANP . . . B 2 1.862 -6.688 16.69 1 53.57 ? O2' ANP 301 A 1 HETATM 21 C C1' ANP . . . B 2 3.839 -6.628 17.982 1 42.48 ? C1' ANP 301 A 1 HETATM 22 N N9 ANP . . . B 2 4.815 -5.57 18.128 1 32.95 ? N9 ANP 301 A 1 HETATM 23 C C8 ANP . . . B 2 6.012 -5.503 17.534 1 32.8 ? C8 ANP 301 A 1 HETATM 24 N N7 ANP . . . B 2 6.711 -4.438 17.919 1 34.03 ? N7 ANP 301 A 1 HETATM 25 C C5 ANP . . . B 2 5.879 -3.769 18.751 1 27.87 ? C5 ANP 301 A 1 HETATM 26 C C6 ANP . . . B 2 6.019 -2.503 19.431 1 26.4 ? C6 ANP 301 A 1 HETATM 27 N N6 ANP . . . B 2 7.18 -1.813 19.284 1 31.84 ? N6 ANP 301 A 1 HETATM 28 N N1 ANP . . . B 2 5.004 -2.147 20.189 1 30.69 ? N1 ANP 301 A 1 HETATM 29 C C2 ANP . . . B 2 3.853 -2.909 20.329 1 33.35 ? C2 ANP 301 A 1 HETATM 30 N N3 ANP . . . B 2 3.647 -4.078 19.643 1 32.49 ? N3 ANP 301 A 1 HETATM 31 C C4 ANP . . . B 2 4.64 -4.501 18.888 1 29.73 ? C4 ANP 301 A 1 # _model_server_stats.io_time_ms 141 _model_server_stats.parse_time_ms 139 _model_server_stats.create_model_time_ms 96 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #