data_5OP2 # _model_server_result.job_id VFedK7GgTiy3Xe-RNg0Fsg _model_server_result.datetime_utc '2025-03-04 22:16:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5op2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5OP2 # _exptl.entry_id 5OP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-methylpiperazin-1-yl)-2-phenylmethoxy-~{N}-pyridin-3-yl-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.3 _cell.angle_gamma 90 _cell.entry_id 5OP2 _cell.length_a 45.13 _cell.length_b 66.08 _cell.length_c 55.18 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H26 N4 O2' _chem_comp.formula_weight 402.489 _chem_comp.id A0Q _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-methylpiperazin-1-yl)-2-phenylmethoxy-~{N}-pyridin-3-yl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 A0Q doub 1 n y C21 C20 A0Q sing 2 n y C22 C23 A0Q sing 3 n y C20 C9 A0Q doub 4 n y C23 C24 A0Q doub 5 n y C9 C24 A0Q sing 6 n y C9 C8 A0Q sing 7 n n C8 O7 A0Q sing 8 n n O7 C3 A0Q sing 9 n n N18 C19 A0Q doub 10 n y N18 C17 A0Q sing 11 n y C19 C14 A0Q sing 12 n y C17 C16 A0Q doub 13 n y C4 C3 A0Q doub 14 n y C4 C5 A0Q sing 15 n y C3 C2 A0Q sing 16 n y C14 N12 A0Q sing 17 n n C14 C15 A0Q doub 18 n y N12 C11 A0Q sing 19 n n C16 C15 A0Q sing 20 n y C5 C6 A0Q doub 21 n y C2 C11 A0Q sing 22 n n C2 C1 A0Q doub 23 n y C11 O13 A0Q doub 24 n n C6 C1 A0Q sing 25 n y C6 N10 A0Q sing 26 n n N10 C29 A0Q sing 27 n n N10 C25 A0Q sing 28 n n C29 C28 A0Q sing 29 n n C28 N27 A0Q sing 30 n n C25 C26 A0Q sing 31 n n C26 N27 A0Q sing 32 n n N27 C30 A0Q sing 33 n n C1 H1 A0Q sing 34 n n C4 H2 A0Q sing 35 n n C5 H3 A0Q sing 36 n n C8 H4 A0Q sing 37 n n C8 H5 A0Q sing 38 n n N12 H6 A0Q sing 39 n n C15 H7 A0Q sing 40 n n C16 H8 A0Q sing 41 n n C17 H9 A0Q sing 42 n n C19 H10 A0Q sing 43 n n C20 H11 A0Q sing 44 n n C21 H12 A0Q sing 45 n n C22 H13 A0Q sing 46 n n C23 H14 A0Q sing 47 n n C24 H15 A0Q sing 48 n n C25 H16 A0Q sing 49 n n C25 H17 A0Q sing 50 n n C26 H18 A0Q sing 51 n n C26 H19 A0Q sing 52 n n C28 H21 A0Q sing 53 n n C28 H22 A0Q sing 54 n n C29 H23 A0Q sing 55 n n C29 H24 A0Q sing 56 n n C30 H25 A0Q sing 57 n n C30 H26 A0Q sing 58 n n C30 H27 A0Q sing 59 n n # _atom_sites.entry_id 5OP2 _atom_sites.fract_transf_matrix[1][1] 0.022158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003628 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A0Q A 1 301 1272 A0Q UNL . C 3 CL A 1 302 1273 CL CL . D 3 CL A 1 303 1274 CL CL . E 4 HOH A 1 401 2168 HOH HOH . E 4 HOH A 2 402 2114 HOH HOH . E 4 HOH A 3 403 2177 HOH HOH . E 4 HOH A 4 404 2129 HOH HOH . E 4 HOH A 5 405 2198 HOH HOH . E 4 HOH A 6 406 2137 HOH HOH . E 4 HOH A 7 407 2130 HOH HOH . E 4 HOH A 8 408 2118 HOH HOH . E 4 HOH A 9 409 2011 HOH HOH . E 4 HOH A 10 410 2134 HOH HOH . E 4 HOH A 11 411 2135 HOH HOH . E 4 HOH A 12 412 2121 HOH HOH . E 4 HOH A 13 413 2169 HOH HOH . E 4 HOH A 14 414 2108 HOH HOH . E 4 HOH A 15 415 2138 HOH HOH . E 4 HOH A 16 416 2059 HOH HOH . E 4 HOH A 17 417 2126 HOH HOH . E 4 HOH A 18 418 2093 HOH HOH . E 4 HOH A 19 419 2096 HOH HOH . E 4 HOH A 20 420 2110 HOH HOH . E 4 HOH A 21 421 2156 HOH HOH . E 4 HOH A 22 422 2132 HOH HOH . E 4 HOH A 23 423 2040 HOH HOH . E 4 HOH A 24 424 2190 HOH HOH . E 4 HOH A 25 425 2106 HOH HOH . E 4 HOH A 26 426 2073 HOH HOH . E 4 HOH A 27 427 2028 HOH HOH . E 4 HOH A 28 428 2099 HOH HOH . E 4 HOH A 29 429 2074 HOH HOH . E 4 HOH A 30 430 2160 HOH HOH . E 4 HOH A 31 431 2010 HOH HOH . E 4 HOH A 32 432 2071 HOH HOH . E 4 HOH A 33 433 2075 HOH HOH . E 4 HOH A 34 434 2127 HOH HOH . E 4 HOH A 35 435 2043 HOH HOH . E 4 HOH A 36 436 2078 HOH HOH . E 4 HOH A 37 437 2022 HOH HOH . E 4 HOH A 38 438 2151 HOH HOH . E 4 HOH A 39 439 2003 HOH HOH . E 4 HOH A 40 440 2002 HOH HOH . E 4 HOH A 41 441 2087 HOH HOH . E 4 HOH A 42 442 2188 HOH HOH . E 4 HOH A 43 443 2020 HOH HOH . E 4 HOH A 44 444 2145 HOH HOH . E 4 HOH A 45 445 2076 HOH HOH . E 4 HOH A 46 446 2085 HOH HOH . E 4 HOH A 47 447 2113 HOH HOH . E 4 HOH A 48 448 2052 HOH HOH . E 4 HOH A 49 449 2176 HOH HOH . E 4 HOH A 50 450 2150 HOH HOH . E 4 HOH A 51 451 2152 HOH HOH . E 4 HOH A 52 452 2026 HOH HOH . E 4 HOH A 53 453 2030 HOH HOH . E 4 HOH A 54 454 2018 HOH HOH . E 4 HOH A 55 455 2089 HOH HOH . E 4 HOH A 56 456 2092 HOH HOH . E 4 HOH A 57 457 2083 HOH HOH . E 4 HOH A 58 458 2119 HOH HOH . E 4 HOH A 59 459 2088 HOH HOH . E 4 HOH A 60 460 2050 HOH HOH . E 4 HOH A 61 461 2149 HOH HOH . E 4 HOH A 62 462 2066 HOH HOH . E 4 HOH A 63 463 2164 HOH HOH . E 4 HOH A 64 464 2098 HOH HOH . E 4 HOH A 65 465 2033 HOH HOH . E 4 HOH A 66 466 2069 HOH HOH . E 4 HOH A 67 467 2116 HOH HOH . E 4 HOH A 68 468 2148 HOH HOH . E 4 HOH A 69 469 2128 HOH HOH . E 4 HOH A 70 470 2029 HOH HOH . E 4 HOH A 71 471 2051 HOH HOH . E 4 HOH A 72 472 2117 HOH HOH . E 4 HOH A 73 473 2112 HOH HOH . E 4 HOH A 74 474 2079 HOH HOH . E 4 HOH A 75 475 2111 HOH HOH . E 4 HOH A 76 476 2171 HOH HOH . E 4 HOH A 77 477 2097 HOH HOH . E 4 HOH A 78 478 2021 HOH HOH . E 4 HOH A 79 479 2086 HOH HOH . E 4 HOH A 80 480 2046 HOH HOH . E 4 HOH A 81 481 2139 HOH HOH . E 4 HOH A 82 482 2044 HOH HOH . E 4 HOH A 83 483 2143 HOH HOH . E 4 HOH A 84 484 2016 HOH HOH . E 4 HOH A 85 485 2065 HOH HOH . E 4 HOH A 86 486 2163 HOH HOH . E 4 HOH A 87 487 2012 HOH HOH . E 4 HOH A 88 488 2101 HOH HOH . E 4 HOH A 89 489 2063 HOH HOH . E 4 HOH A 90 490 2161 HOH HOH . E 4 HOH A 91 491 2014 HOH HOH . E 4 HOH A 92 492 2031 HOH HOH . E 4 HOH A 93 493 2042 HOH HOH . E 4 HOH A 94 494 2142 HOH HOH . E 4 HOH A 95 495 2041 HOH HOH . E 4 HOH A 96 496 2167 HOH HOH . E 4 HOH A 97 497 2060 HOH HOH . E 4 HOH A 98 498 2125 HOH HOH . E 4 HOH A 99 499 2141 HOH HOH . E 4 HOH A 100 500 2103 HOH HOH . E 4 HOH A 101 501 2062 HOH HOH . E 4 HOH A 102 502 2153 HOH HOH . E 4 HOH A 103 503 2048 HOH HOH . E 4 HOH A 104 504 2077 HOH HOH . E 4 HOH A 105 505 2194 HOH HOH . E 4 HOH A 106 506 2165 HOH HOH . E 4 HOH A 107 507 2123 HOH HOH . E 4 HOH A 108 508 2009 HOH HOH . E 4 HOH A 109 509 2036 HOH HOH . E 4 HOH A 110 510 2008 HOH HOH . E 4 HOH A 111 511 2155 HOH HOH . E 4 HOH A 112 512 2189 HOH HOH . E 4 HOH A 113 513 2045 HOH HOH . E 4 HOH A 114 514 2070 HOH HOH . E 4 HOH A 115 515 2053 HOH HOH . E 4 HOH A 116 516 2027 HOH HOH . E 4 HOH A 117 517 2162 HOH HOH . E 4 HOH A 118 518 2019 HOH HOH . E 4 HOH A 119 519 2080 HOH HOH . E 4 HOH A 120 520 2094 HOH HOH . E 4 HOH A 121 521 2109 HOH HOH . E 4 HOH A 122 522 2131 HOH HOH . E 4 HOH A 123 523 2047 HOH HOH . E 4 HOH A 124 524 2055 HOH HOH . E 4 HOH A 125 525 2104 HOH HOH . E 4 HOH A 126 526 2147 HOH HOH . E 4 HOH A 127 527 2102 HOH HOH . E 4 HOH A 128 528 2170 HOH HOH . E 4 HOH A 129 529 2178 HOH HOH . E 4 HOH A 130 530 2035 HOH HOH . E 4 HOH A 131 531 2061 HOH HOH . E 4 HOH A 132 532 2056 HOH HOH . E 4 HOH A 133 533 2037 HOH HOH . E 4 HOH A 134 534 2173 HOH HOH . E 4 HOH A 135 535 2146 HOH HOH . E 4 HOH A 136 536 2186 HOH HOH . E 4 HOH A 137 537 2172 HOH HOH . E 4 HOH A 138 538 2090 HOH HOH . E 4 HOH A 139 539 2068 HOH HOH . E 4 HOH A 140 540 2120 HOH HOH . E 4 HOH A 141 541 2049 HOH HOH . E 4 HOH A 142 542 2091 HOH HOH . E 4 HOH A 143 543 2154 HOH HOH . E 4 HOH A 144 544 2095 HOH HOH . E 4 HOH A 145 545 2107 HOH HOH . E 4 HOH A 146 546 2058 HOH HOH . E 4 HOH A 147 547 2084 HOH HOH . E 4 HOH A 148 548 2158 HOH HOH . E 4 HOH A 149 549 2183 HOH HOH . E 4 HOH A 150 550 2082 HOH HOH . E 4 HOH A 151 551 2182 HOH HOH . E 4 HOH A 152 552 2006 HOH HOH . E 4 HOH A 153 553 2133 HOH HOH . E 4 HOH A 154 554 2105 HOH HOH . E 4 HOH A 155 555 2124 HOH HOH . E 4 HOH A 156 556 2057 HOH HOH . E 4 HOH A 157 557 2174 HOH HOH . E 4 HOH A 158 558 2122 HOH HOH . E 4 HOH A 159 559 2017 HOH HOH . E 4 HOH A 160 560 2115 HOH HOH . E 4 HOH A 161 561 2100 HOH HOH . E 4 HOH A 162 562 2140 HOH HOH . E 4 HOH A 163 563 2191 HOH HOH . E 4 HOH A 164 564 2187 HOH HOH . E 4 HOH A 165 565 2157 HOH HOH . E 4 HOH A 166 566 2023 HOH HOH . E 4 HOH A 167 567 2004 HOH HOH . E 4 HOH A 168 568 2197 HOH HOH . E 4 HOH A 169 569 2144 HOH HOH . E 4 HOH A 170 570 2136 HOH HOH . E 4 HOH A 171 571 2067 HOH HOH . E 4 HOH A 172 572 2001 HOH HOH . E 4 HOH A 173 573 2195 HOH HOH . E 4 HOH A 174 574 2081 HOH HOH . E 4 HOH A 175 575 2181 HOH HOH . E 4 HOH A 176 576 2175 HOH HOH . E 4 HOH A 177 577 2072 HOH HOH . E 4 HOH A 178 578 2180 HOH HOH . E 4 HOH A 179 579 2185 HOH HOH . E 4 HOH A 180 580 2015 HOH HOH . E 4 HOH A 181 581 2007 HOH HOH . E 4 HOH A 182 582 2184 HOH HOH . E 4 HOH A 183 583 2038 HOH HOH . E 4 HOH A 184 584 2199 HOH HOH . E 4 HOH A 185 585 2024 HOH HOH . E 4 HOH A 186 586 2032 HOH HOH . E 4 HOH A 187 587 2013 HOH HOH . E 4 HOH A 188 588 2034 HOH HOH . E 4 HOH A 189 589 2192 HOH HOH . E 4 HOH A 190 590 2193 HOH HOH . E 4 HOH A 191 591 2005 HOH HOH . E 4 HOH A 192 592 2039 HOH HOH . E 4 HOH A 193 593 2166 HOH HOH . E 4 HOH A 194 594 2025 HOH HOH . E 4 HOH A 195 595 2054 HOH HOH . E 4 HOH A 196 596 2064 HOH HOH . E 4 HOH A 197 597 2159 HOH HOH . E 4 HOH A 198 598 2179 HOH HOH . E 4 HOH A 199 599 2196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A0Q . . . B 2 0.98 -4.625 19.452 1 28.93 ? C1 A0Q 301 A 1 HETATM 2 C C2 A0Q . . . B 2 1.951 -4.948 18.548 1 29.51 ? C2 A0Q 301 A 1 HETATM 3 C C3 A0Q . . . B 2 1.582 -5.768 17.478 1 28.99 ? C3 A0Q 301 A 1 HETATM 4 C C4 A0Q . . . B 2 0.285 -6.225 17.385 1 32.6 ? C4 A0Q 301 A 1 HETATM 5 C C5 A0Q . . . B 2 -0.719 -5.877 18.316 1 31.98 ? C5 A0Q 301 A 1 HETATM 6 C C6 A0Q . . . B 2 -0.34 -5.061 19.376 1 34.22 ? C6 A0Q 301 A 1 HETATM 7 O O7 A0Q . . . B 2 2.539 -6.103 16.572 1 38.63 ? O7 A0Q 301 A 1 HETATM 8 C C8 A0Q . . . B 2 2.238 -7.036 15.434 1 37.92 ? C8 A0Q 301 A 1 HETATM 9 C C9 A0Q . . . B 2 3.663 -7.344 14.866 1 38.9 ? C9 A0Q 301 A 1 HETATM 10 N N10 A0Q . . . B 2 -1.266 -4.706 20.442 1 36.49 ? N10 A0Q 301 A 1 HETATM 11 C C11 A0Q . . . B 2 3.349 -4.443 18.774 1 29.79 ? C11 A0Q 301 A 1 HETATM 12 N N12 A0Q . . . B 2 4.397 -4.977 18.062 1 27.76 ? N12 A0Q 301 A 1 HETATM 13 O O13 A0Q . . . B 2 3.532 -3.555 19.604 1 30.74 ? O13 A0Q 301 A 1 HETATM 14 C C14 A0Q . . . B 2 5.719 -4.507 17.854 1 26.24 ? C14 A0Q 301 A 1 HETATM 15 C C15 A0Q . . . B 2 6.278 -3.449 18.487 1 26.56 ? C15 A0Q 301 A 1 HETATM 16 C C16 A0Q . . . B 2 7.557 -3.013 18.24 1 28.34 ? C16 A0Q 301 A 1 HETATM 17 C C17 A0Q . . . B 2 8.328 -3.661 17.283 1 30.1 ? C17 A0Q 301 A 1 HETATM 18 N N18 A0Q . . . B 2 7.798 -4.736 16.688 1 24.8 ? N18 A0Q 301 A 1 HETATM 19 C C19 A0Q . . . B 2 6.535 -5.142 16.903 1 27.69 ? C19 A0Q 301 A 1 HETATM 20 C C20 A0Q . . . B 2 4.211 -6.464 13.929 1 39.03 ? C20 A0Q 301 A 1 HETATM 21 C C21 A0Q . . . B 2 5.505 -6.67 13.417 1 40.99 ? C21 A0Q 301 A 1 HETATM 22 C C22 A0Q . . . B 2 6.273 -7.783 13.808 1 40.45 ? C22 A0Q 301 A 1 HETATM 23 C C23 A0Q . . . B 2 5.702 -8.661 14.758 1 42.23 ? C23 A0Q 301 A 1 HETATM 24 C C24 A0Q . . . B 2 4.413 -8.456 15.271 1 37.8 ? C24 A0Q 301 A 1 HETATM 25 C C25 A0Q . . . B 2 -0.678 -4.22 21.721 1 41.09 ? C25 A0Q 301 A 1 HETATM 26 C C26 A0Q . . . B 2 -1.718 -3.443 22.562 1 43.05 ? C26 A0Q 301 A 1 HETATM 27 N N27 A0Q . . . B 2 -2.926 -4.24 22.673 1 45.08 ? N27 A0Q 301 A 1 HETATM 28 C C28 A0Q . . . B 2 -3.53 -4.421 21.34 1 43.31 ? C28 A0Q 301 A 1 HETATM 29 C C29 A0Q . . . B 2 -2.631 -5.259 20.469 1 40.99 ? C29 A0Q 301 A 1 HETATM 30 C C30 A0Q . . . B 2 -3.844 -3.551 23.602 1 45.53 ? C30 A0Q 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #