data_5OP6 # _model_server_result.job_id g9AnFhUFYwS1pQD2dY8ynQ _model_server_result.datetime_utc '2024-11-27 21:05:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5op6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5OP6 # _exptl.entry_id 5OP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OP6 _cell.length_a 86.21 _cell.length_b 86.21 _cell.length_c 147.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 201 A HIS 199 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 A OD2 ASP 203 A ASP 201 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc3 A NE2 HIS 281 A HIS 279 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 B ZN ZN . A ZN 401 1_555 E O19 A0W . A A0W 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc5 B ZN ZN . A ZN 401 1_555 E O11 A0W . A A0W 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 186 n n C1 C2 GOL sing 187 n n C1 H11 GOL sing 188 n n C1 H12 GOL sing 189 n n O1 HO1 GOL sing 190 n n C2 O2 GOL sing 191 n n C2 C3 GOL sing 192 n n C2 H2 GOL sing 193 n n O2 HO2 GOL sing 194 n n C3 O3 GOL sing 195 n n C3 H31 GOL sing 196 n n C3 H32 GOL sing 197 n n O3 HO3 GOL sing 198 n n # _atom_sites.entry_id 5OP6 _atom_sites.fract_transf_matrix[1][1] 0.0116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 SO4 A 1 402 1 SO4 SO4 . D 3 SO4 A 1 403 1 SO4 SO4 . E 4 A0W A 1 404 1 A0W PNH . F 5 GOL A 1 405 1 GOL GOL . G 6 HOH A 1 501 137 HOH HOH . G 6 HOH A 2 502 11 HOH HOH . G 6 HOH A 3 503 79 HOH HOH . G 6 HOH A 4 504 125 HOH HOH . G 6 HOH A 5 505 9 HOH HOH . G 6 HOH A 6 506 105 HOH HOH . G 6 HOH A 7 507 15 HOH HOH . G 6 HOH A 8 508 138 HOH HOH . G 6 HOH A 9 509 129 HOH HOH . G 6 HOH A 10 510 141 HOH HOH . G 6 HOH A 11 511 139 HOH HOH . G 6 HOH A 12 512 136 HOH HOH . G 6 HOH A 13 513 140 HOH HOH . G 6 HOH A 14 514 68 HOH HOH . G 6 HOH A 15 515 51 HOH HOH . G 6 HOH A 16 516 1 HOH HOH . G 6 HOH A 17 517 3 HOH HOH . G 6 HOH A 18 518 5 HOH HOH . G 6 HOH A 19 519 99 HOH HOH . G 6 HOH A 20 520 98 HOH HOH . G 6 HOH A 21 521 130 HOH HOH . G 6 HOH A 22 522 134 HOH HOH . G 6 HOH A 23 523 102 HOH HOH . G 6 HOH A 24 524 142 HOH HOH . G 6 HOH A 25 525 39 HOH HOH . G 6 HOH A 26 526 2 HOH HOH . G 6 HOH A 27 527 4 HOH HOH . G 6 HOH A 28 528 8 HOH HOH . G 6 HOH A 29 529 120 HOH HOH . G 6 HOH A 30 530 144 HOH HOH . G 6 HOH A 31 531 131 HOH HOH . G 6 HOH A 32 532 7 HOH HOH . G 6 HOH A 33 533 14 HOH HOH . G 6 HOH A 34 534 62 HOH HOH . G 6 HOH A 35 535 145 HOH HOH . G 6 HOH A 36 536 26 HOH HOH . G 6 HOH A 37 537 116 HOH HOH . G 6 HOH A 38 538 115 HOH HOH . G 6 HOH A 39 539 67 HOH HOH . G 6 HOH A 40 540 44 HOH HOH . G 6 HOH A 41 541 25 HOH HOH . G 6 HOH A 42 542 143 HOH HOH . G 6 HOH A 43 543 124 HOH HOH . G 6 HOH A 44 544 146 HOH HOH . G 6 HOH A 45 545 132 HOH HOH . G 6 HOH A 46 546 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 -19.533 17.589 -3.172 0.8 83.93 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 5 -19.258 18.94 -3.469 0.8 81.78 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 5 -19.247 16.715 -4.389 0.8 84.16 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 5 -18.433 17.418 -5.299 0.8 82.82 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 5 -18.551 15.426 -3.963 0.8 84.13 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 5 -18.465 14.537 -5.055 0.8 85.03 ? O3 GOL 405 A 1 HETATM 7 H H11 GOL . . . F 5 -20.579 17.483 -2.882 0.8 100.72 ? H11 GOL 405 A 1 HETATM 8 H H12 GOL . . . F 5 -18.916 17.265 -2.334 0.8 100.72 ? H12 GOL 405 A 1 HETATM 9 H HO1 GOL . . . F 5 -19.507 19.5 -2.705 0.8 98.13 ? HO1 GOL 405 A 1 HETATM 10 H H2 GOL . . . F 5 -20.194 16.459 -4.863 0.8 100.99 ? H2 GOL 405 A 1 HETATM 11 H HO2 GOL . . . F 5 -17.574 17.627 -4.876 0.8 99.39 ? HO2 GOL 405 A 1 HETATM 12 H H31 GOL . . . F 5 -19.111 14.958 -3.153 0.8 100.96 ? H31 GOL 405 A 1 HETATM 13 H H32 GOL . . . F 5 -17.551 15.654 -3.596 0.8 100.96 ? H32 GOL 405 A 1 HETATM 14 H HO3 GOL . . . F 5 -18.025 13.709 -4.768 0.8 102.03 ? HO3 GOL 405 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #