data_5OP7
#
_model_server_result.job_id            v_ZJzH0X2z4d8UDZjb2q_Q 
_model_server_result.datetime_utc      '2024-11-13 06:20:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5op7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5OP7 
#
_exptl.entry_id    5OP7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.99 
_cell.angle_gamma         90 
_cell.entry_id            5OP7 
_cell.length_a            45.07 
_cell.length_b            65.62 
_cell.length_c            54.37 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OP7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D NA NA . A NA 303 1_555 E O HOH . A HOH 552 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc2 D NA NA . A NA 303 1_555 E O HOH . A HOH 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5OP7 
_atom_sites.fract_transf_matrix[1][1]    0.022188 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004712 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018803 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1K A 1 301 1271 A1K UNL . 
C 3 CL A 1 302 1272 CL CL . 
D 4 NA A 1 303 1273 NA NA . 
E 5 HOH A 1 401 2181 HOH HOH . 
E 5 HOH A 2 402 2120 HOH HOH . 
E 5 HOH A 3 403 2160 HOH HOH . 
E 5 HOH A 4 404 2180 HOH HOH . 
E 5 HOH A 5 405 2129 HOH HOH . 
E 5 HOH A 6 406 2023 HOH HOH . 
E 5 HOH A 7 407 2194 HOH HOH . 
E 5 HOH A 8 408 2190 HOH HOH . 
E 5 HOH A 9 409 2053 HOH HOH . 
E 5 HOH A 10 410 2042 HOH HOH . 
E 5 HOH A 11 411 2131 HOH HOH . 
E 5 HOH A 12 412 2029 HOH HOH . 
E 5 HOH A 13 413 2147 HOH HOH . 
E 5 HOH A 14 414 2033 HOH HOH . 
E 5 HOH A 15 415 2091 HOH HOH . 
E 5 HOH A 16 416 2046 HOH HOH . 
E 5 HOH A 17 417 2001 HOH HOH . 
E 5 HOH A 18 418 2059 HOH HOH . 
E 5 HOH A 19 419 2063 HOH HOH . 
E 5 HOH A 20 420 2017 HOH HOH . 
E 5 HOH A 21 421 2145 HOH HOH . 
E 5 HOH A 22 422 2066 HOH HOH . 
E 5 HOH A 23 423 2143 HOH HOH . 
E 5 HOH A 24 424 2149 HOH HOH . 
E 5 HOH A 25 425 2111 HOH HOH . 
E 5 HOH A 26 426 2015 HOH HOH . 
E 5 HOH A 27 427 2003 HOH HOH . 
E 5 HOH A 28 428 2176 HOH HOH . 
E 5 HOH A 29 429 2135 HOH HOH . 
E 5 HOH A 30 430 2154 HOH HOH . 
E 5 HOH A 31 431 2103 HOH HOH . 
E 5 HOH A 32 432 2034 HOH HOH . 
E 5 HOH A 33 433 2096 HOH HOH . 
E 5 HOH A 34 434 2153 HOH HOH . 
E 5 HOH A 35 435 2021 HOH HOH . 
E 5 HOH A 36 436 2151 HOH HOH . 
E 5 HOH A 37 437 2123 HOH HOH . 
E 5 HOH A 38 438 2192 HOH HOH . 
E 5 HOH A 39 439 2079 HOH HOH . 
E 5 HOH A 40 440 2142 HOH HOH . 
E 5 HOH A 41 441 2179 HOH HOH . 
E 5 HOH A 42 442 2080 HOH HOH . 
E 5 HOH A 43 443 2102 HOH HOH . 
E 5 HOH A 44 444 2045 HOH HOH . 
E 5 HOH A 45 445 2162 HOH HOH . 
E 5 HOH A 46 446 2085 HOH HOH . 
E 5 HOH A 47 447 2150 HOH HOH . 
E 5 HOH A 48 448 2070 HOH HOH . 
E 5 HOH A 49 449 2024 HOH HOH . 
E 5 HOH A 50 450 2058 HOH HOH . 
E 5 HOH A 51 451 2002 HOH HOH . 
E 5 HOH A 52 452 2094 HOH HOH . 
E 5 HOH A 53 453 2056 HOH HOH . 
E 5 HOH A 54 454 2121 HOH HOH . 
E 5 HOH A 55 455 2117 HOH HOH . 
E 5 HOH A 56 456 2018 HOH HOH . 
E 5 HOH A 57 457 2037 HOH HOH . 
E 5 HOH A 58 458 2086 HOH HOH . 
E 5 HOH A 59 459 2134 HOH HOH . 
E 5 HOH A 60 460 2088 HOH HOH . 
E 5 HOH A 61 461 2082 HOH HOH . 
E 5 HOH A 62 462 2078 HOH HOH . 
E 5 HOH A 63 463 2161 HOH HOH . 
E 5 HOH A 64 464 2132 HOH HOH . 
E 5 HOH A 65 465 2112 HOH HOH . 
E 5 HOH A 66 466 2155 HOH HOH . 
E 5 HOH A 67 467 2113 HOH HOH . 
E 5 HOH A 68 468 2141 HOH HOH . 
E 5 HOH A 69 469 2186 HOH HOH . 
E 5 HOH A 70 470 2172 HOH HOH . 
E 5 HOH A 71 471 2173 HOH HOH . 
E 5 HOH A 72 472 2148 HOH HOH . 
E 5 HOH A 73 473 2049 HOH HOH . 
E 5 HOH A 74 474 2038 HOH HOH . 
E 5 HOH A 75 475 2035 HOH HOH . 
E 5 HOH A 76 476 2140 HOH HOH . 
E 5 HOH A 77 477 2050 HOH HOH . 
E 5 HOH A 78 478 2032 HOH HOH . 
E 5 HOH A 79 479 2081 HOH HOH . 
E 5 HOH A 80 480 2174 HOH HOH . 
E 5 HOH A 81 481 2119 HOH HOH . 
E 5 HOH A 82 482 2156 HOH HOH . 
E 5 HOH A 83 483 2110 HOH HOH . 
E 5 HOH A 84 484 2116 HOH HOH . 
E 5 HOH A 85 485 2077 HOH HOH . 
E 5 HOH A 86 486 2157 HOH HOH . 
E 5 HOH A 87 487 2124 HOH HOH . 
E 5 HOH A 88 488 2069 HOH HOH . 
E 5 HOH A 89 489 2051 HOH HOH . 
E 5 HOH A 90 490 2158 HOH HOH . 
E 5 HOH A 91 491 2065 HOH HOH . 
E 5 HOH A 92 492 2006 HOH HOH . 
E 5 HOH A 93 493 2092 HOH HOH . 
E 5 HOH A 94 494 2052 HOH HOH . 
E 5 HOH A 95 495 2060 HOH HOH . 
E 5 HOH A 96 496 2054 HOH HOH . 
E 5 HOH A 97 497 2039 HOH HOH . 
E 5 HOH A 98 498 2163 HOH HOH . 
E 5 HOH A 99 499 2089 HOH HOH . 
E 5 HOH A 100 500 2064 HOH HOH . 
E 5 HOH A 101 501 2083 HOH HOH . 
E 5 HOH A 102 502 2055 HOH HOH . 
E 5 HOH A 103 503 2100 HOH HOH . 
E 5 HOH A 104 504 2105 HOH HOH . 
E 5 HOH A 105 505 2041 HOH HOH . 
E 5 HOH A 106 506 2185 HOH HOH . 
E 5 HOH A 107 507 2170 HOH HOH . 
E 5 HOH A 108 508 2125 HOH HOH . 
E 5 HOH A 109 509 2095 HOH HOH . 
E 5 HOH A 110 510 2126 HOH HOH . 
E 5 HOH A 111 511 2188 HOH HOH . 
E 5 HOH A 112 512 2197 HOH HOH . 
E 5 HOH A 113 513 2101 HOH HOH . 
E 5 HOH A 114 514 2067 HOH HOH . 
E 5 HOH A 115 515 2074 HOH HOH . 
E 5 HOH A 116 516 2014 HOH HOH . 
E 5 HOH A 117 517 2062 HOH HOH . 
E 5 HOH A 118 518 2144 HOH HOH . 
E 5 HOH A 119 519 2075 HOH HOH . 
E 5 HOH A 120 520 2152 HOH HOH . 
E 5 HOH A 121 521 2115 HOH HOH . 
E 5 HOH A 122 522 2061 HOH HOH . 
E 5 HOH A 123 523 2133 HOH HOH . 
E 5 HOH A 124 524 2013 HOH HOH . 
E 5 HOH A 125 525 2166 HOH HOH . 
E 5 HOH A 126 526 2047 HOH HOH . 
E 5 HOH A 127 527 2005 HOH HOH . 
E 5 HOH A 128 528 2071 HOH HOH . 
E 5 HOH A 129 529 2191 HOH HOH . 
E 5 HOH A 130 530 2122 HOH HOH . 
E 5 HOH A 131 531 2004 HOH HOH . 
E 5 HOH A 132 532 2196 HOH HOH . 
E 5 HOH A 133 533 2164 HOH HOH . 
E 5 HOH A 134 534 2073 HOH HOH . 
E 5 HOH A 135 535 2090 HOH HOH . 
E 5 HOH A 136 536 2193 HOH HOH . 
E 5 HOH A 137 537 2184 HOH HOH . 
E 5 HOH A 138 538 2130 HOH HOH . 
E 5 HOH A 139 539 2183 HOH HOH . 
E 5 HOH A 140 540 2187 HOH HOH . 
E 5 HOH A 141 541 2146 HOH HOH . 
E 5 HOH A 142 542 2177 HOH HOH . 
E 5 HOH A 143 543 2087 HOH HOH . 
E 5 HOH A 144 544 2136 HOH HOH . 
E 5 HOH A 145 545 2048 HOH HOH . 
E 5 HOH A 146 546 2019 HOH HOH . 
E 5 HOH A 147 547 2159 HOH HOH . 
E 5 HOH A 148 548 2044 HOH HOH . 
E 5 HOH A 149 549 2175 HOH HOH . 
E 5 HOH A 150 550 2137 HOH HOH . 
E 5 HOH A 151 551 2114 HOH HOH . 
E 5 HOH A 152 552 2189 HOH HOH . 
E 5 HOH A 153 553 2076 HOH HOH . 
E 5 HOH A 154 554 2128 HOH HOH . 
E 5 HOH A 155 555 2010 HOH HOH . 
E 5 HOH A 156 556 2171 HOH HOH . 
E 5 HOH A 157 557 2043 HOH HOH . 
E 5 HOH A 158 558 2097 HOH HOH . 
E 5 HOH A 159 559 2106 HOH HOH . 
E 5 HOH A 160 560 2027 HOH HOH . 
E 5 HOH A 161 561 2025 HOH HOH . 
E 5 HOH A 162 562 2022 HOH HOH . 
E 5 HOH A 163 563 2020 HOH HOH . 
E 5 HOH A 164 564 2012 HOH HOH . 
E 5 HOH A 165 565 2127 HOH HOH . 
E 5 HOH A 166 566 2026 HOH HOH . 
E 5 HOH A 167 567 2138 HOH HOH . 
E 5 HOH A 168 568 2182 HOH HOH . 
E 5 HOH A 169 569 2084 HOH HOH . 
E 5 HOH A 170 570 2007 HOH HOH . 
E 5 HOH A 171 571 2009 HOH HOH . 
E 5 HOH A 172 572 2072 HOH HOH . 
E 5 HOH A 173 573 2107 HOH HOH . 
E 5 HOH A 174 574 2165 HOH HOH . 
E 5 HOH A 175 575 2028 HOH HOH . 
E 5 HOH A 176 576 2178 HOH HOH . 
E 5 HOH A 177 577 2195 HOH HOH . 
E 5 HOH A 178 578 2104 HOH HOH . 
E 5 HOH A 179 579 2109 HOH HOH . 
E 5 HOH A 180 580 2016 HOH HOH . 
E 5 HOH A 181 581 2108 HOH HOH . 
E 5 HOH A 182 582 2011 HOH HOH . 
E 5 HOH A 183 583 2068 HOH HOH . 
E 5 HOH A 184 584 2036 HOH HOH . 
E 5 HOH A 185 585 2099 HOH HOH . 
E 5 HOH A 186 586 2168 HOH HOH . 
E 5 HOH A 187 587 2167 HOH HOH . 
E 5 HOH A 188 588 2139 HOH HOH . 
E 5 HOH A 189 589 2093 HOH HOH . 
E 5 HOH A 190 590 2098 HOH HOH . 
E 5 HOH A 191 591 2118 HOH HOH . 
E 5 HOH A 192 592 2169 HOH HOH . 
E 5 HOH A 193 593 2057 HOH HOH . 
E 5 HOH A 194 594 2040 HOH HOH . 
E 5 HOH A 195 595 2030 HOH HOH . 
E 5 HOH A 196 596 2008 HOH HOH . 
E 5 HOH A 197 597 2031 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -9.039 
_atom_site.Cartn_y               -10.828 
_atom_site.Cartn_z               5.884 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        55.47 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           303 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#