data_5OP8 # _model_server_result.job_id vmwxId1NttB5AEVUwJlmGg _model_server_result.datetime_utc '2024-11-24 19:04:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5op8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5OP8 # _exptl.entry_id 5OP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.303 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(6-morpholin-4-ylpyrimidin-4-yl)-4-(1,2,3-triazol-1-yl)-1~{H}-pyrazol-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OP8 _cell.length_a 86.18 _cell.length_b 86.18 _cell.length_c 148.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 200 A HIS 199 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc2 A OD2 ASP 202 A ASP 201 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc3 A NE2 HIS 280 A HIS 279 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc4 B ZN ZN . A ZN 401 1_555 C N10 A1H . A A1H 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 B ZN ZN . A ZN 401 1_555 C N13 A1H . A A1H 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? # _chem_comp.formula 'C13 H14 N8 O2' _chem_comp.formula_weight 314.303 _chem_comp.id A1H _chem_comp.mon_nstd_flag . _chem_comp.name 2-(6-morpholin-4-ylpyrimidin-4-yl)-4-(1,2,3-triazol-1-yl)-1~{H}-pyrazol-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C05 A1H doub 1 n y C06 N07 A1H sing 2 n y C05 N04 A1H sing 3 n y N07 N08 A1H doub 4 n y C09 C03 A1H doub 5 n n C09 N10 A1H sing 6 n n N04 N08 A1H sing 7 n y N04 C03 A1H sing 8 n n C03 C02 A1H sing 9 n n N10 N11 A1H sing 10 n n C02 N11 A1H sing 11 n n C02 O01 A1H doub 12 n n N11 C12 A1H sing 13 n n N13 C12 A1H sing 14 n y N13 C14 A1H doub 15 n y C12 C23 A1H doub 16 n y C14 N15 A1H sing 17 n y C23 C16 A1H sing 18 n y N15 C16 A1H doub 19 n y C16 N17 A1H sing 20 n n N17 C18 A1H sing 21 n n N17 C22 A1H sing 22 n n C18 C19 A1H sing 23 n n C22 C21 A1H sing 24 n n C19 O20 A1H sing 25 n n C21 O20 A1H sing 26 n n C05 H051 A1H sing 27 n n C06 H061 A1H sing 28 n n C09 H091 A1H sing 29 n n N10 H101 A1H sing 30 n n C14 H141 A1H sing 31 n n C18 H182 A1H sing 32 n n C18 H181 A1H sing 33 n n C19 H191 A1H sing 34 n n C19 H192 A1H sing 35 n n C21 H212 A1H sing 36 n n C21 H211 A1H sing 37 n n C22 H221 A1H sing 38 n n C22 H222 A1H sing 39 n n C23 H231 A1H sing 40 n n # _atom_sites.entry_id 5OP8 _atom_sites.fract_transf_matrix[1][1] 0.011604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 A1H A 1 402 1 A1H MTP . D 4 SO4 A 1 403 1 SO4 SO4 . E 4 SO4 A 1 404 1 SO4 SO4 . F 4 SO4 A 1 405 1 SO4 SO4 . G 5 GOL A 1 406 1 GOL GOL . H 5 GOL A 1 407 2 GOL GOL . I 6 HOH A 1 501 120 HOH HOH . I 6 HOH A 2 502 142 HOH HOH . I 6 HOH A 3 503 131 HOH HOH . I 6 HOH A 4 504 70 HOH HOH . I 6 HOH A 5 505 16 HOH HOH . I 6 HOH A 6 506 12 HOH HOH . I 6 HOH A 7 507 57 HOH HOH . I 6 HOH A 8 508 104 HOH HOH . I 6 HOH A 9 509 15 HOH HOH . I 6 HOH A 10 510 96 HOH HOH . I 6 HOH A 11 511 30 HOH HOH . I 6 HOH A 12 512 23 HOH HOH . I 6 HOH A 13 513 117 HOH HOH . I 6 HOH A 14 514 20 HOH HOH . I 6 HOH A 15 515 14 HOH HOH . I 6 HOH A 16 516 1 HOH HOH . I 6 HOH A 17 517 121 HOH HOH . I 6 HOH A 18 518 63 HOH HOH . I 6 HOH A 19 519 10 HOH HOH . I 6 HOH A 20 520 80 HOH HOH . I 6 HOH A 21 521 7 HOH HOH . I 6 HOH A 22 522 36 HOH HOH . I 6 HOH A 23 523 3 HOH HOH . I 6 HOH A 24 524 9 HOH HOH . I 6 HOH A 25 525 130 HOH HOH . I 6 HOH A 26 526 17 HOH HOH . I 6 HOH A 27 527 8 HOH HOH . I 6 HOH A 28 528 37 HOH HOH . I 6 HOH A 29 529 127 HOH HOH . I 6 HOH A 30 530 116 HOH HOH . I 6 HOH A 31 531 95 HOH HOH . I 6 HOH A 32 532 149 HOH HOH . I 6 HOH A 33 533 35 HOH HOH . I 6 HOH A 34 534 22 HOH HOH . I 6 HOH A 35 535 2 HOH HOH . I 6 HOH A 36 536 13 HOH HOH . I 6 HOH A 37 537 113 HOH HOH . I 6 HOH A 38 538 141 HOH HOH . I 6 HOH A 39 539 97 HOH HOH . I 6 HOH A 40 540 93 HOH HOH . I 6 HOH A 41 541 21 HOH HOH . I 6 HOH A 42 542 72 HOH HOH . I 6 HOH A 43 543 136 HOH HOH . I 6 HOH A 44 544 31 HOH HOH . I 6 HOH A 45 545 135 HOH HOH . I 6 HOH A 46 546 67 HOH HOH . I 6 HOH A 47 547 147 HOH HOH . I 6 HOH A 48 548 124 HOH HOH . I 6 HOH A 49 549 18 HOH HOH . I 6 HOH A 50 550 122 HOH HOH . I 6 HOH A 51 551 145 HOH HOH . I 6 HOH A 52 552 105 HOH HOH . I 6 HOH A 53 553 132 HOH HOH . I 6 HOH A 54 554 26 HOH HOH . I 6 HOH A 55 555 137 HOH HOH . I 6 HOH A 56 556 129 HOH HOH . I 6 HOH A 57 557 150 HOH HOH . I 6 HOH A 58 558 79 HOH HOH . I 6 HOH A 59 559 43 HOH HOH . I 6 HOH A 60 560 139 HOH HOH . I 6 HOH A 61 561 133 HOH HOH . I 6 HOH A 62 562 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 A1H . . . C 3 -18.955 22.633 -6.091 1 79.33 ? O01 A1H 402 A 1 HETATM 2 C C02 A1H . . . C 3 -18.368 22.066 -6.937 1 78.92 ? C02 A1H 402 A 1 HETATM 3 C C03 A1H . . . C 3 -18.082 22.573 -8.262 1 70.58 ? C03 A1H 402 A 1 HETATM 4 N N04 A1H . . . C 3 -18.456 23.884 -8.813 1 66.17 ? N04 A1H 402 A 1 HETATM 5 C C05 A1H . . . C 3 -19.157 24.101 -9.958 1 53.29 ? C05 A1H 402 A 1 HETATM 6 C C06 A1H . . . C 3 -19.284 25.474 -10.117 1 60.6 ? C06 A1H 402 A 1 HETATM 7 N N07 A1H . . . C 3 -18.693 26.044 -9.133 1 66.39 ? N07 A1H 402 A 1 HETATM 8 N N08 A1H . . . C 3 -18.157 25.026 -8.292 1 59.9 ? N08 A1H 402 A 1 HETATM 9 C C09 A1H . . . C 3 -17.336 21.555 -8.981 1 58.32 ? C09 A1H 402 A 1 HETATM 10 N N10 A1H . . . C 3 -17.172 20.45 -8.108 1 77.13 ? N10 A1H 402 A 1 HETATM 11 N N11 A1H . . . C 3 -17.809 20.755 -6.84 1 75.82 ? N11 A1H 402 A 1 HETATM 12 C C12 A1H . . . C 3 -17.837 19.889 -5.736 1 86.87 ? C12 A1H 402 A 1 HETATM 13 N N13 A1H . . . C 3 -17.094 18.704 -5.751 1 82.07 ? N13 A1H 402 A 1 HETATM 14 C C14 A1H . . . C 3 -17.118 17.889 -4.716 1 108.43 ? C14 A1H 402 A 1 HETATM 15 N N15 A1H . . . C 3 -17.836 18.163 -3.621 1 130.77 ? N15 A1H 402 A 1 HETATM 16 C C16 A1H . . . C 3 -18.602 19.322 -3.512 1 139.2 ? C16 A1H 402 A 1 HETATM 17 N N17 A1H . . . C 3 -19.359 19.598 -2.335 1 158.51 ? N17 A1H 402 A 1 HETATM 18 C C18 A1H . . . C 3 -20.457 18.777 -2.03 1 160.71 ? C18 A1H 402 A 1 HETATM 19 C C19 A1H . . . C 3 -20.834 18.861 -0.538 1 178.94 ? C19 A1H 402 A 1 HETATM 20 O O20 A1H . . . C 3 -20.958 20.205 -0.044 1 202.34 ? O20 A1H 402 A 1 HETATM 21 C C21 A1H . . . C 3 -19.989 21.123 -0.497 1 211.02 ? C21 A1H 402 A 1 HETATM 22 C C22 A1H . . . C 3 -19.579 20.938 -1.988 1 183.94 ? C22 A1H 402 A 1 HETATM 23 C C23 A1H . . . C 3 -18.615 20.227 -4.588 1 119.16 ? C23 A1H 402 A 1 HETATM 24 H H051 A1H . . . C 3 -19.531 23.376 -10.594 1 63.94 ? H051 A1H 402 A 1 HETATM 25 H H061 A1H . . . C 3 -19.751 25.935 -10.862 1 72.72 ? H061 A1H 402 A 1 HETATM 26 H H091 A1H . . . C 3 -17.018 21.618 -9.865 1 69.99 ? H091 A1H 402 A 1 HETATM 27 H H101 A1H . . . C 3 -16.739 19.673 -8.309 1 92.56 ? H101 A1H 402 A 1 HETATM 28 H H141 A1H . . . C 3 -16.584 17.047 -4.749 1 130.11 ? H141 A1H 402 A 1 HETATM 29 H H182 A1H . . . C 3 -20.234 17.852 -2.25 1 192.85 ? H182 A1H 402 A 1 HETATM 30 H H181 A1H . . . C 3 -21.244 19.062 -2.582 1 192.85 ? H181 A1H 402 A 1 HETATM 31 H H191 A1H . . . C 3 -20.118 18.383 0.005 1 214.73 ? H191 A1H 402 A 1 HETATM 32 H H192 A1H . . . C 3 -21.704 18.388 -0.4 1 214.73 ? H192 A1H 402 A 1 HETATM 33 H H212 A1H . . . C 3 -20.366 22.093 -0.368 1 253.22 ? H212 A1H 402 A 1 HETATM 34 H H211 A1H . . . C 3 -19.209 21.026 0.043 1 253.22 ? H211 A1H 402 A 1 HETATM 35 H H221 A1H . . . C 3 -20.295 21.302 -2.563 1 220.73 ? H221 A1H 402 A 1 HETATM 36 H H222 A1H . . . C 3 -18.744 21.449 -2.154 1 220.73 ? H222 A1H 402 A 1 HETATM 37 H H231 A1H . . . C 3 -19.173 21.103 -4.549 1 143 ? H231 A1H 402 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 520 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 37 #