data_5OPC # _model_server_result.job_id 68bafxTZxMKbXIY1pwIyxw _model_server_result.datetime_utc '2024-11-24 04:46:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5opc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":409}' # _entry.id 5OPC # _exptl.entry_id 5OPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OPC _cell.length_a 86.799 _cell.length_b 86.799 _cell.length_c 149.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -86.799 86.799 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 200 A HIS 199 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 A OD2 ASP 202 A ASP 201 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A NE2 HIS 280 A HIS 279 1_555 G ZN ZN . A ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 G ZN ZN . A ZN 406 1_555 M O10 A1Z . A A1Z 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc5 G ZN ZN . A ZN 406 1_555 M N11 A1Z . A A1Z 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 162 n n C1 C2 GOL sing 163 n n C1 H11 GOL sing 164 n n C1 H12 GOL sing 165 n n O1 HO1 GOL sing 166 n n C2 O2 GOL sing 167 n n C2 C3 GOL sing 168 n n C2 H2 GOL sing 169 n n O2 HO2 GOL sing 170 n n C3 O3 GOL sing 171 n n C3 H31 GOL sing 172 n n C3 H32 GOL sing 173 n n O3 HO3 GOL sing 174 n n # _atom_sites.entry_id 5OPC _atom_sites.fract_transf_matrix[1][1] 0.011521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 2 SO4 A 1 403 3 SO4 SO4 . E 2 SO4 A 1 404 4 SO4 SO4 . F 2 SO4 A 1 405 5 SO4 SO4 . G 3 ZN A 1 406 1 ZN ZN . H 4 GOL A 1 407 1 GOL GOL . I 4 GOL A 1 408 2 GOL GOL . J 4 GOL A 1 409 5 GOL GOL . K 4 GOL A 1 410 7 GOL GOL . L 4 GOL A 1 411 8 GOL GOL . M 5 A1Z A 1 412 1 A1Z AKB . N 6 HOH A 1 501 143 HOH HOH . N 6 HOH A 2 502 24 HOH HOH . N 6 HOH A 3 503 50 HOH HOH . N 6 HOH A 4 504 6 HOH HOH . N 6 HOH A 5 505 71 HOH HOH . N 6 HOH A 6 506 11 HOH HOH . N 6 HOH A 7 507 94 HOH HOH . N 6 HOH A 8 508 128 HOH HOH . N 6 HOH A 9 509 138 HOH HOH . N 6 HOH A 10 510 46 HOH HOH . N 6 HOH A 11 511 139 HOH HOH . N 6 HOH A 12 512 5 HOH HOH . N 6 HOH A 13 513 96 HOH HOH . N 6 HOH A 14 514 23 HOH HOH . N 6 HOH A 15 515 1 HOH HOH . N 6 HOH A 16 516 47 HOH HOH . N 6 HOH A 17 517 61 HOH HOH . N 6 HOH A 18 518 134 HOH HOH . N 6 HOH A 19 519 79 HOH HOH . N 6 HOH A 20 520 98 HOH HOH . N 6 HOH A 21 521 21 HOH HOH . N 6 HOH A 22 522 100 HOH HOH . N 6 HOH A 23 523 34 HOH HOH . N 6 HOH A 24 524 45 HOH HOH . N 6 HOH A 25 525 8 HOH HOH . N 6 HOH A 26 526 102 HOH HOH . N 6 HOH A 27 527 9 HOH HOH . N 6 HOH A 28 528 75 HOH HOH . N 6 HOH A 29 529 137 HOH HOH . N 6 HOH A 30 530 32 HOH HOH . N 6 HOH A 31 531 31 HOH HOH . N 6 HOH A 32 532 17 HOH HOH . N 6 HOH A 33 533 13 HOH HOH . N 6 HOH A 34 534 2 HOH HOH . N 6 HOH A 35 535 4 HOH HOH . N 6 HOH A 36 536 33 HOH HOH . N 6 HOH A 37 537 25 HOH HOH . N 6 HOH A 38 538 41 HOH HOH . N 6 HOH A 39 539 12 HOH HOH . N 6 HOH A 40 540 106 HOH HOH . N 6 HOH A 41 541 90 HOH HOH . N 6 HOH A 42 542 14 HOH HOH . N 6 HOH A 43 543 140 HOH HOH . N 6 HOH A 44 544 10 HOH HOH . N 6 HOH A 45 545 54 HOH HOH . N 6 HOH A 46 546 15 HOH HOH . N 6 HOH A 47 547 19 HOH HOH . N 6 HOH A 48 548 118 HOH HOH . N 6 HOH A 49 549 95 HOH HOH . N 6 HOH A 50 550 87 HOH HOH . N 6 HOH A 51 551 112 HOH HOH . N 6 HOH A 52 552 16 HOH HOH . N 6 HOH A 53 553 52 HOH HOH . N 6 HOH A 54 554 88 HOH HOH . N 6 HOH A 55 555 63 HOH HOH . N 6 HOH A 56 556 84 HOH HOH . N 6 HOH A 57 557 29 HOH HOH . N 6 HOH A 58 558 125 HOH HOH . N 6 HOH A 59 559 58 HOH HOH . N 6 HOH A 60 560 39 HOH HOH . N 6 HOH A 61 561 53 HOH HOH . N 6 HOH A 62 562 99 HOH HOH . N 6 HOH A 63 563 72 HOH HOH . N 6 HOH A 64 564 105 HOH HOH . N 6 HOH A 65 565 18 HOH HOH . N 6 HOH A 66 566 124 HOH HOH . N 6 HOH A 67 567 142 HOH HOH . N 6 HOH A 68 568 93 HOH HOH . N 6 HOH A 69 569 68 HOH HOH . N 6 HOH A 70 570 121 HOH HOH . N 6 HOH A 71 571 114 HOH HOH . N 6 HOH A 72 572 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 4 -38.543 29.883 -21.746 1 110.65 ? C1 GOL 409 A 1 HETATM 2 O O1 GOL . . . J 4 -37.572 29.319 -22.599 1 119.76 ? O1 GOL 409 A 1 HETATM 3 C C2 GOL . . . J 4 -39.837 29.085 -21.849 1 111.55 ? C2 GOL 409 A 1 HETATM 4 O O2 GOL . . . J 4 -39.535 27.71 -21.925 1 100.81 ? O2 GOL 409 A 1 HETATM 5 C C3 GOL . . . J 4 -40.716 29.36 -20.633 1 113.18 ? C3 GOL 409 A 1 HETATM 6 O O3 GOL . . . J 4 -41.864 28.54 -20.667 1 101.96 ? O3 GOL 409 A 1 HETATM 7 H H11 GOL . . . J 4 -38.726 30.92 -22.029 1 132.78 ? H11 GOL 409 A 1 HETATM 8 H H12 GOL . . . J 4 -38.182 29.869 -20.717 1 132.78 ? H12 GOL 409 A 1 HETATM 9 H HO1 GOL . . . J 4 -36.762 29.871 -22.582 1 143.71 ? HO1 GOL 409 A 1 HETATM 10 H H2 GOL . . . J 4 -40.371 29.398 -22.746 1 133.86 ? H2 GOL 409 A 1 HETATM 11 H HO2 GOL . . . J 4 -39.07 27.431 -21.109 1 120.97 ? HO2 GOL 409 A 1 HETATM 12 H H31 GOL . . . J 4 -41.016 30.409 -20.627 1 135.82 ? H31 GOL 409 A 1 HETATM 13 H H32 GOL . . . J 4 -40.153 29.165 -19.721 1 135.82 ? H32 GOL 409 A 1 HETATM 14 H HO3 GOL . . . J 4 -42.516 28.862 -20.009 1 122.35 ? HO3 GOL 409 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #