data_5OPN
#
_model_server_result.job_id            8BwC42AIv2BBFXTG3KGNXA 
_model_server_result.datetime_utc      '2024-11-15 15:40:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5opn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":505}' 
#
_entry.id    5OPN 
#
_exptl.entry_id    5OPN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5OPN 
_cell.length_a            91.469 
_cell.length_b            127.115 
_cell.length_c            130.218 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OPN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5OPN 
_atom_sites.fract_transf_matrix[1][1]    0.010933 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007867 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007679 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 501 1 GOL GOL . 
C 2 GOL A 1 502 3 GOL GOL . 
D 2 GOL A 1 503 4 GOL GOL . 
E 2 GOL A 1 504 5 GOL GOL . 
F 2 GOL A 1 505 6 GOL GOL . 
G 2 GOL A 1 506 7 GOL GOL . 
H 3 HOH A 1 601 200 HOH HOH . 
H 3 HOH A 2 602 213 HOH HOH . 
H 3 HOH A 3 603 236 HOH HOH . 
H 3 HOH A 4 604 98 HOH HOH . 
H 3 HOH A 5 605 81 HOH HOH . 
H 3 HOH A 6 606 246 HOH HOH . 
H 3 HOH A 7 607 66 HOH HOH . 
H 3 HOH A 8 608 142 HOH HOH . 
H 3 HOH A 9 609 69 HOH HOH . 
H 3 HOH A 10 610 109 HOH HOH . 
H 3 HOH A 11 611 84 HOH HOH . 
H 3 HOH A 12 612 275 HOH HOH . 
H 3 HOH A 13 613 29 HOH HOH . 
H 3 HOH A 14 614 201 HOH HOH . 
H 3 HOH A 15 615 62 HOH HOH . 
H 3 HOH A 16 616 186 HOH HOH . 
H 3 HOH A 17 617 111 HOH HOH . 
H 3 HOH A 18 618 206 HOH HOH . 
H 3 HOH A 19 619 72 HOH HOH . 
H 3 HOH A 20 620 50 HOH HOH . 
H 3 HOH A 21 621 157 HOH HOH . 
H 3 HOH A 22 622 93 HOH HOH . 
H 3 HOH A 23 623 87 HOH HOH . 
H 3 HOH A 24 624 96 HOH HOH . 
H 3 HOH A 25 625 76 HOH HOH . 
H 3 HOH A 26 626 86 HOH HOH . 
H 3 HOH A 27 627 74 HOH HOH . 
H 3 HOH A 28 628 4 HOH HOH . 
H 3 HOH A 29 629 119 HOH HOH . 
H 3 HOH A 30 630 230 HOH HOH . 
H 3 HOH A 31 631 166 HOH HOH . 
H 3 HOH A 32 632 75 HOH HOH . 
H 3 HOH A 33 633 184 HOH HOH . 
H 3 HOH A 34 634 107 HOH HOH . 
H 3 HOH A 35 635 52 HOH HOH . 
H 3 HOH A 36 636 254 HOH HOH . 
H 3 HOH A 37 637 21 HOH HOH . 
H 3 HOH A 38 638 51 HOH HOH . 
H 3 HOH A 39 639 19 HOH HOH . 
H 3 HOH A 40 640 57 HOH HOH . 
H 3 HOH A 41 641 208 HOH HOH . 
H 3 HOH A 42 642 280 HOH HOH . 
H 3 HOH A 43 643 11 HOH HOH . 
H 3 HOH A 44 644 20 HOH HOH . 
H 3 HOH A 45 645 202 HOH HOH . 
H 3 HOH A 46 646 198 HOH HOH . 
H 3 HOH A 47 647 7 HOH HOH . 
H 3 HOH A 48 648 68 HOH HOH . 
H 3 HOH A 49 649 108 HOH HOH . 
H 3 HOH A 50 650 95 HOH HOH . 
H 3 HOH A 51 651 18 HOH HOH . 
H 3 HOH A 52 652 141 HOH HOH . 
H 3 HOH A 53 653 70 HOH HOH . 
H 3 HOH A 54 654 245 HOH HOH . 
H 3 HOH A 55 655 59 HOH HOH . 
H 3 HOH A 56 656 101 HOH HOH . 
H 3 HOH A 57 657 160 HOH HOH . 
H 3 HOH A 58 658 36 HOH HOH . 
H 3 HOH A 59 659 259 HOH HOH . 
H 3 HOH A 60 660 234 HOH HOH . 
H 3 HOH A 61 661 30 HOH HOH . 
H 3 HOH A 62 662 58 HOH HOH . 
H 3 HOH A 63 663 161 HOH HOH . 
H 3 HOH A 64 664 175 HOH HOH . 
H 3 HOH A 65 665 71 HOH HOH . 
H 3 HOH A 66 666 61 HOH HOH . 
H 3 HOH A 67 667 67 HOH HOH . 
H 3 HOH A 68 668 204 HOH HOH . 
H 3 HOH A 69 669 155 HOH HOH . 
H 3 HOH A 70 670 122 HOH HOH . 
H 3 HOH A 71 671 35 HOH HOH . 
H 3 HOH A 72 672 39 HOH HOH . 
H 3 HOH A 73 673 64 HOH HOH . 
H 3 HOH A 74 674 222 HOH HOH . 
H 3 HOH A 75 675 33 HOH HOH . 
H 3 HOH A 76 676 99 HOH HOH . 
H 3 HOH A 77 677 40 HOH HOH . 
H 3 HOH A 78 678 43 HOH HOH . 
H 3 HOH A 79 679 149 HOH HOH . 
H 3 HOH A 80 680 8 HOH HOH . 
H 3 HOH A 81 681 182 HOH HOH . 
H 3 HOH A 82 682 170 HOH HOH . 
H 3 HOH A 83 683 41 HOH HOH . 
H 3 HOH A 84 684 82 HOH HOH . 
H 3 HOH A 85 685 90 HOH HOH . 
H 3 HOH A 86 686 268 HOH HOH . 
H 3 HOH A 87 687 118 HOH HOH . 
H 3 HOH A 88 688 145 HOH HOH . 
H 3 HOH A 89 689 218 HOH HOH . 
H 3 HOH A 90 690 162 HOH HOH . 
H 3 HOH A 91 691 212 HOH HOH . 
H 3 HOH A 92 692 192 HOH HOH . 
H 3 HOH A 93 693 56 HOH HOH . 
H 3 HOH A 94 694 221 HOH HOH . 
H 3 HOH A 95 695 167 HOH HOH . 
H 3 HOH A 96 696 187 HOH HOH . 
H 3 HOH A 97 697 239 HOH HOH . 
H 3 HOH A 98 698 223 HOH HOH . 
H 3 HOH A 99 699 9 HOH HOH . 
H 3 HOH A 100 700 73 HOH HOH . 
H 3 HOH A 101 701 121 HOH HOH . 
H 3 HOH A 102 702 267 HOH HOH . 
H 3 HOH A 103 703 163 HOH HOH . 
H 3 HOH A 104 704 34 HOH HOH . 
H 3 HOH A 105 705 88 HOH HOH . 
H 3 HOH A 106 706 13 HOH HOH . 
H 3 HOH A 107 707 100 HOH HOH . 
H 3 HOH A 108 708 42 HOH HOH . 
H 3 HOH A 109 709 128 HOH HOH . 
H 3 HOH A 110 710 251 HOH HOH . 
H 3 HOH A 111 711 147 HOH HOH . 
H 3 HOH A 112 712 281 HOH HOH . 
H 3 HOH A 113 713 129 HOH HOH . 
H 3 HOH A 114 714 106 HOH HOH . 
H 3 HOH A 115 715 48 HOH HOH . 
H 3 HOH A 116 716 164 HOH HOH . 
H 3 HOH A 117 717 188 HOH HOH . 
H 3 HOH A 118 718 49 HOH HOH . 
H 3 HOH A 119 719 47 HOH HOH . 
H 3 HOH A 120 720 25 HOH HOH . 
H 3 HOH A 121 721 120 HOH HOH . 
H 3 HOH A 122 722 227 HOH HOH . 
H 3 HOH A 123 723 15 HOH HOH . 
H 3 HOH A 124 724 144 HOH HOH . 
H 3 HOH A 125 725 255 HOH HOH . 
H 3 HOH A 126 726 103 HOH HOH . 
H 3 HOH A 127 727 168 HOH HOH . 
H 3 HOH A 128 728 22 HOH HOH . 
H 3 HOH A 129 729 6 HOH HOH . 
H 3 HOH A 130 730 54 HOH HOH . 
H 3 HOH A 131 731 146 HOH HOH . 
H 3 HOH A 132 732 214 HOH HOH . 
H 3 HOH A 133 733 215 HOH HOH . 
H 3 HOH A 134 734 148 HOH HOH . 
H 3 HOH A 135 735 229 HOH HOH . 
H 3 HOH A 136 736 24 HOH HOH . 
H 3 HOH A 137 737 140 HOH HOH . 
H 3 HOH A 138 738 77 HOH HOH . 
H 3 HOH A 139 739 23 HOH HOH . 
H 3 HOH A 140 740 94 HOH HOH . 
H 3 HOH A 141 741 165 HOH HOH . 
H 3 HOH A 142 742 181 HOH HOH . 
H 3 HOH A 143 743 110 HOH HOH . 
H 3 HOH A 144 744 123 HOH HOH . 
H 3 HOH A 145 745 116 HOH HOH . 
H 3 HOH A 146 746 216 HOH HOH . 
H 3 HOH A 147 747 44 HOH HOH . 
H 3 HOH A 148 748 173 HOH HOH . 
H 3 HOH A 149 749 171 HOH HOH . 
H 3 HOH A 150 750 278 HOH HOH . 
H 3 HOH A 151 751 14 HOH HOH . 
H 3 HOH A 152 752 217 HOH HOH . 
H 3 HOH A 153 753 5 HOH HOH . 
H 3 HOH A 154 754 258 HOH HOH . 
H 3 HOH A 155 755 211 HOH HOH . 
H 3 HOH A 156 756 105 HOH HOH . 
H 3 HOH A 157 757 3 HOH HOH . 
H 3 HOH A 158 758 80 HOH HOH . 
H 3 HOH A 159 759 135 HOH HOH . 
H 3 HOH A 160 760 53 HOH HOH . 
H 3 HOH A 161 761 228 HOH HOH . 
H 3 HOH A 162 762 247 HOH HOH . 
H 3 HOH A 163 763 127 HOH HOH . 
H 3 HOH A 164 764 264 HOH HOH . 
H 3 HOH A 165 765 46 HOH HOH . 
H 3 HOH A 166 766 102 HOH HOH . 
H 3 HOH A 167 767 151 HOH HOH . 
H 3 HOH A 168 768 85 HOH HOH . 
H 3 HOH A 169 769 257 HOH HOH . 
H 3 HOH A 170 770 136 HOH HOH . 
H 3 HOH A 171 771 179 HOH HOH . 
H 3 HOH A 172 772 270 HOH HOH . 
H 3 HOH A 173 773 224 HOH HOH . 
H 3 HOH A 174 774 150 HOH HOH . 
H 3 HOH A 175 775 243 HOH HOH . 
H 3 HOH A 176 776 237 HOH HOH . 
H 3 HOH A 177 777 126 HOH HOH . 
H 3 HOH A 178 778 32 HOH HOH . 
H 3 HOH A 179 779 266 HOH HOH . 
H 3 HOH A 180 780 260 HOH HOH . 
H 3 HOH A 181 781 262 HOH HOH . 
H 3 HOH A 182 782 63 HOH HOH . 
H 3 HOH A 183 783 17 HOH HOH . 
H 3 HOH A 184 784 183 HOH HOH . 
H 3 HOH A 185 785 55 HOH HOH . 
H 3 HOH A 186 786 38 HOH HOH . 
H 3 HOH A 187 787 131 HOH HOH . 
H 3 HOH A 188 788 78 HOH HOH . 
H 3 HOH A 189 789 193 HOH HOH . 
H 3 HOH A 190 790 97 HOH HOH . 
H 3 HOH A 191 791 153 HOH HOH . 
H 3 HOH A 192 792 152 HOH HOH . 
H 3 HOH A 193 793 37 HOH HOH . 
H 3 HOH A 194 794 225 HOH HOH . 
H 3 HOH A 195 795 91 HOH HOH . 
H 3 HOH A 196 796 114 HOH HOH . 
H 3 HOH A 197 797 113 HOH HOH . 
H 3 HOH A 198 798 60 HOH HOH . 
H 3 HOH A 199 799 124 HOH HOH . 
H 3 HOH A 200 800 130 HOH HOH . 
H 3 HOH A 201 801 220 HOH HOH . 
H 3 HOH A 202 802 133 HOH HOH . 
H 3 HOH A 203 803 265 HOH HOH . 
H 3 HOH A 204 804 197 HOH HOH . 
H 3 HOH A 205 805 156 HOH HOH . 
H 3 HOH A 206 806 143 HOH HOH . 
H 3 HOH A 207 807 250 HOH HOH . 
H 3 HOH A 208 808 2 HOH HOH . 
H 3 HOH A 209 809 27 HOH HOH . 
H 3 HOH A 210 810 104 HOH HOH . 
H 3 HOH A 211 811 16 HOH HOH . 
H 3 HOH A 212 812 271 HOH HOH . 
H 3 HOH A 213 813 139 HOH HOH . 
H 3 HOH A 214 814 272 HOH HOH . 
H 3 HOH A 215 815 92 HOH HOH . 
H 3 HOH A 216 816 233 HOH HOH . 
H 3 HOH A 217 817 159 HOH HOH . 
H 3 HOH A 218 818 195 HOH HOH . 
H 3 HOH A 219 819 174 HOH HOH . 
H 3 HOH A 220 820 89 HOH HOH . 
H 3 HOH A 221 821 45 HOH HOH . 
H 3 HOH A 222 822 199 HOH HOH . 
H 3 HOH A 223 823 219 HOH HOH . 
H 3 HOH A 224 824 226 HOH HOH . 
H 3 HOH A 225 825 203 HOH HOH . 
H 3 HOH A 226 826 277 HOH HOH . 
H 3 HOH A 227 827 196 HOH HOH . 
H 3 HOH A 228 828 169 HOH HOH . 
H 3 HOH A 229 829 172 HOH HOH . 
H 3 HOH A 230 830 274 HOH HOH . 
H 3 HOH A 231 831 158 HOH HOH . 
H 3 HOH A 232 832 207 HOH HOH . 
H 3 HOH A 233 833 115 HOH HOH . 
H 3 HOH A 234 834 261 HOH HOH . 
H 3 HOH A 235 835 137 HOH HOH . 
H 3 HOH A 236 836 240 HOH HOH . 
H 3 HOH A 237 837 209 HOH HOH . 
H 3 HOH A 238 838 238 HOH HOH . 
H 3 HOH A 239 839 177 HOH HOH . 
H 3 HOH A 240 840 249 HOH HOH . 
H 3 HOH A 241 841 185 HOH HOH . 
H 3 HOH A 242 842 65 HOH HOH . 
H 3 HOH A 243 843 242 HOH HOH . 
H 3 HOH A 244 844 263 HOH HOH . 
H 3 HOH A 245 845 79 HOH HOH . 
H 3 HOH A 246 846 210 HOH HOH . 
H 3 HOH A 247 847 132 HOH HOH . 
H 3 HOH A 248 848 117 HOH HOH . 
H 3 HOH A 249 849 180 HOH HOH . 
H 3 HOH A 250 850 232 HOH HOH . 
H 3 HOH A 251 851 252 HOH HOH . 
H 3 HOH A 252 852 83 HOH HOH . 
H 3 HOH A 253 853 279 HOH HOH . 
H 3 HOH A 254 854 282 HOH HOH . 
H 3 HOH A 255 855 241 HOH HOH . 
H 3 HOH A 256 856 244 HOH HOH . 
H 3 HOH A 257 857 178 HOH HOH . 
H 3 HOH A 258 858 273 HOH HOH . 
H 3 HOH A 259 859 256 HOH HOH . 
H 3 HOH A 260 860 138 HOH HOH . 
H 3 HOH A 261 861 269 HOH HOH . 
H 3 HOH A 262 862 205 HOH HOH . 
H 3 HOH A 263 863 191 HOH HOH . 
H 3 HOH A 264 864 194 HOH HOH . 
H 3 HOH A 265 865 253 HOH HOH . 
H 3 HOH A 266 866 154 HOH HOH . 
H 3 HOH A 267 867 112 HOH HOH . 
H 3 HOH A 268 868 176 HOH HOH . 
H 3 HOH A 269 869 248 HOH HOH . 
H 3 HOH A 270 870 276 HOH HOH . 
H 3 HOH A 271 871 235 HOH HOH . 
H 3 HOH A 272 872 231 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 2 -25.662 -18.348 -25.854 1 49.78 ? C1 GOL 505 A 1 
HETATM 2 O O1 GOL . . . F 2 -26.934 -17.804 -26.206 1 45.19 ? O1 GOL 505 A 1 
HETATM 3 C C2 GOL . . . F 2 -24.831 -17.275 -25.225 1 47.08 ? C2 GOL 505 A 1 
HETATM 4 O O2 GOL . . . F 2 -24.468 -16.387 -26.316 1 41.74 ? O2 GOL 505 A 1 
HETATM 5 C C3 GOL . . . F 2 -25.648 -16.622 -24.089 1 49.55 ? C3 GOL 505 A 1 
HETATM 6 O O3 GOL . . . F 2 -26.909 -17.221 -23.73 1 52.85 ? O3 GOL 505 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#