data_5OQ2
#
_model_server_result.job_id            LPUNMbtFf3GgAfL-riyl7A 
_model_server_result.datetime_utc      '2025-04-09 12:13:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oq2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":502}' 
#
_entry.id    5OQ2 
#
_exptl.entry_id    5OQ2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.21 
_cell.angle_gamma         90 
_cell.entry_id            5OQ2 
_cell.length_a            55.28 
_cell.length_b            60.41 
_cell.length_c            105.05 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OQ2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 26 A GLU 31 1_555 A N MSE 27 A MSE 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C MSE 27 A MSE 32 1_555 A N ARG 28 A ARG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A C GLY 116 A GLY 121 1_555 A N MSE 117 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C MSE 117 A MSE 122 1_555 A N GLU 118 A GLU 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 A C THR 129 A THR 134 1_555 A N MSE 130 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale6 A C MSE 130 A MSE 135 1_555 A N ALA 131 A ALA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale7 A C SER 359 A SER 364 1_555 A N MSE 360 A MSE 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 A C MSE 360 A MSE 365 1_555 A N TYR 361 A TYR 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 B C GLU 26 B GLU 31 1_555 B N MSE 27 B MSE 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 B C MSE 27 B MSE 32 1_555 B N ARG 28 B ARG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale11 B C GLY 116 B GLY 121 1_555 B N MSE 117 B MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale12 B C MSE 117 B MSE 122 1_555 B N GLU 118 B GLU 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale13 B C THR 129 B THR 134 1_555 B N MSE 130 B MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale14 B C MSE 130 B MSE 135 1_555 B N ALA 131 B ALA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale15 B C SER 359 B SER 364 1_555 B N MSE 360 B MSE 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale16 B C MSE 360 B MSE 365 1_555 B N TYR 361 B TYR 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     5OQ2 
_atom_sites.fract_transf_matrix[1][1]    0.01809 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00133 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 501 1 PO4 PO4 . 
D 2 PO4 B 1 501 2 PO4 PO4 . 
E 3 EDO B 1 502 1 EDO EDO . 
F 4 HOH A 1 601 106 HOH HOH . 
F 4 HOH A 2 602 118 HOH HOH . 
F 4 HOH A 3 603 76 HOH HOH . 
F 4 HOH A 4 604 112 HOH HOH . 
F 4 HOH A 5 605 109 HOH HOH . 
F 4 HOH A 6 606 88 HOH HOH . 
F 4 HOH A 7 607 119 HOH HOH . 
F 4 HOH A 8 608 67 HOH HOH . 
F 4 HOH A 9 609 12 HOH HOH . 
F 4 HOH A 10 610 108 HOH HOH . 
F 4 HOH A 11 611 58 HOH HOH . 
F 4 HOH A 12 612 117 HOH HOH . 
F 4 HOH A 13 613 115 HOH HOH . 
F 4 HOH A 14 614 2 HOH HOH . 
F 4 HOH A 15 615 7 HOH HOH . 
F 4 HOH A 16 616 38 HOH HOH . 
F 4 HOH A 17 617 3 HOH HOH . 
F 4 HOH A 18 618 23 HOH HOH . 
F 4 HOH A 19 619 44 HOH HOH . 
F 4 HOH A 20 620 127 HOH HOH . 
F 4 HOH A 21 621 126 HOH HOH . 
F 4 HOH A 22 622 42 HOH HOH . 
F 4 HOH A 23 623 29 HOH HOH . 
F 4 HOH A 24 624 131 HOH HOH . 
F 4 HOH A 25 625 35 HOH HOH . 
F 4 HOH A 26 626 113 HOH HOH . 
F 4 HOH A 27 627 10 HOH HOH . 
F 4 HOH A 28 628 59 HOH HOH . 
F 4 HOH A 29 629 66 HOH HOH . 
F 4 HOH A 30 630 14 HOH HOH . 
F 4 HOH A 31 631 80 HOH HOH . 
F 4 HOH A 32 632 81 HOH HOH . 
F 4 HOH A 33 633 50 HOH HOH . 
F 4 HOH A 34 634 99 HOH HOH . 
F 4 HOH A 35 635 54 HOH HOH . 
F 4 HOH A 36 636 21 HOH HOH . 
F 4 HOH A 37 637 24 HOH HOH . 
F 4 HOH A 38 638 49 HOH HOH . 
F 4 HOH A 39 639 77 HOH HOH . 
F 4 HOH A 40 640 100 HOH HOH . 
F 4 HOH A 41 641 30 HOH HOH . 
F 4 HOH A 42 642 6 HOH HOH . 
F 4 HOH A 43 643 39 HOH HOH . 
F 4 HOH A 44 644 122 HOH HOH . 
F 4 HOH A 45 645 101 HOH HOH . 
F 4 HOH A 46 646 93 HOH HOH . 
F 4 HOH A 47 647 64 HOH HOH . 
F 4 HOH A 48 648 34 HOH HOH . 
F 4 HOH A 49 649 25 HOH HOH . 
F 4 HOH A 50 650 92 HOH HOH . 
F 4 HOH A 51 651 4 HOH HOH . 
F 4 HOH A 52 652 56 HOH HOH . 
F 4 HOH A 53 653 79 HOH HOH . 
F 4 HOH A 54 654 123 HOH HOH . 
F 4 HOH A 55 655 46 HOH HOH . 
F 4 HOH A 56 656 33 HOH HOH . 
F 4 HOH A 57 657 28 HOH HOH . 
F 4 HOH A 58 658 84 HOH HOH . 
F 4 HOH A 59 659 75 HOH HOH . 
F 4 HOH A 60 660 51 HOH HOH . 
F 4 HOH A 61 661 96 HOH HOH . 
F 4 HOH A 62 662 73 HOH HOH . 
F 4 HOH A 63 663 16 HOH HOH . 
F 4 HOH A 64 664 89 HOH HOH . 
F 4 HOH A 65 665 11 HOH HOH . 
F 4 HOH A 66 666 57 HOH HOH . 
F 4 HOH A 67 667 31 HOH HOH . 
F 4 HOH A 68 668 94 HOH HOH . 
F 4 HOH A 69 669 82 HOH HOH . 
F 4 HOH A 70 670 53 HOH HOH . 
F 4 HOH A 71 671 32 HOH HOH . 
F 4 HOH A 72 672 134 HOH HOH . 
F 4 HOH A 73 673 86 HOH HOH . 
F 4 HOH A 74 674 83 HOH HOH . 
F 4 HOH A 75 675 91 HOH HOH . 
F 4 HOH A 76 676 55 HOH HOH . 
F 4 HOH A 77 677 104 HOH HOH . 
F 4 HOH A 78 678 136 HOH HOH . 
F 4 HOH A 79 679 68 HOH HOH . 
F 4 HOH A 80 680 74 HOH HOH . 
F 4 HOH A 81 681 137 HOH HOH . 
F 4 HOH A 82 682 13 HOH HOH . 
F 4 HOH A 83 683 71 HOH HOH . 
F 4 HOH A 84 684 52 HOH HOH . 
F 4 HOH A 85 685 129 HOH HOH . 
F 4 HOH A 86 686 37 HOH HOH . 
F 4 HOH A 87 687 48 HOH HOH . 
F 4 HOH A 88 688 18 HOH HOH . 
F 4 HOH A 89 689 120 HOH HOH . 
F 4 HOH A 90 690 130 HOH HOH . 
F 4 HOH A 91 691 60 HOH HOH . 
F 4 HOH A 92 692 97 HOH HOH . 
F 4 HOH A 93 693 135 HOH HOH . 
F 4 HOH A 94 694 132 HOH HOH . 
F 4 HOH A 95 695 128 HOH HOH . 
G 4 HOH B 1 601 107 HOH HOH . 
G 4 HOH B 2 602 116 HOH HOH . 
G 4 HOH B 3 603 121 HOH HOH . 
G 4 HOH B 4 604 72 HOH HOH . 
G 4 HOH B 5 605 114 HOH HOH . 
G 4 HOH B 6 606 63 HOH HOH . 
G 4 HOH B 7 607 110 HOH HOH . 
G 4 HOH B 8 608 22 HOH HOH . 
G 4 HOH B 9 609 103 HOH HOH . 
G 4 HOH B 10 610 105 HOH HOH . 
G 4 HOH B 11 611 125 HOH HOH . 
G 4 HOH B 12 612 124 HOH HOH . 
G 4 HOH B 13 613 87 HOH HOH . 
G 4 HOH B 14 614 62 HOH HOH . 
G 4 HOH B 15 615 5 HOH HOH . 
G 4 HOH B 16 616 1 HOH HOH . 
G 4 HOH B 17 617 26 HOH HOH . 
G 4 HOH B 18 618 102 HOH HOH . 
G 4 HOH B 19 619 40 HOH HOH . 
G 4 HOH B 20 620 90 HOH HOH . 
G 4 HOH B 21 621 36 HOH HOH . 
G 4 HOH B 22 622 15 HOH HOH . 
G 4 HOH B 23 623 47 HOH HOH . 
G 4 HOH B 24 624 111 HOH HOH . 
G 4 HOH B 25 625 70 HOH HOH . 
G 4 HOH B 26 626 78 HOH HOH . 
G 4 HOH B 27 627 19 HOH HOH . 
G 4 HOH B 28 628 9 HOH HOH . 
G 4 HOH B 29 629 65 HOH HOH . 
G 4 HOH B 30 630 43 HOH HOH . 
G 4 HOH B 31 631 61 HOH HOH . 
G 4 HOH B 32 632 45 HOH HOH . 
G 4 HOH B 33 633 41 HOH HOH . 
G 4 HOH B 34 634 17 HOH HOH . 
G 4 HOH B 35 635 69 HOH HOH . 
G 4 HOH B 36 636 20 HOH HOH . 
G 4 HOH B 37 637 27 HOH HOH . 
G 4 HOH B 38 638 8 HOH HOH . 
G 4 HOH B 39 639 98 HOH HOH . 
G 4 HOH B 40 640 133 HOH HOH . 
G 4 HOH B 41 641 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 3 2.532 14.918 8.505 1 38.62 ? C1 EDO 502 B 1 
HETATM 2 O O1 EDO . . . E 3 2.925 13.722 7.833 1 39.22 ? O1 EDO 502 B 1 
HETATM 3 C C2 EDO . . . E 3 3.781 15.682 8.927 1 38.08 ? C2 EDO 502 B 1 
HETATM 4 O O2 EDO . . . E 3 3.702 17.017 8.431 1 38.19 ? O2 EDO 502 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#