data_5OQ7
#
_model_server_result.job_id            GhIh9e5gVPfLDEoAomEpiQ 
_model_server_result.datetime_utc      '2024-11-13 11:59:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5oq7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    5OQ7 
#
_exptl.entry_id    5OQ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.489 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(4-methylpiperazin-1-yl)-2-phenylmethoxy-~{N}-pyridin-3-yl-benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.76 
_cell.angle_gamma         90 
_cell.entry_id            5OQ7 
_cell.length_a            45.21 
_cell.length_b            66.25 
_cell.length_c            109.32 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5OQ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H26 N4 O2' 
_chem_comp.formula_weight    402.489 
_chem_comp.id                A0Q 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(4-methylpiperazin-1-yl)-2-phenylmethoxy-~{N}-pyridin-3-yl-benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C22 A0Q doub 1 n y 
C21 C20 A0Q sing 2 n y 
C22 C23 A0Q sing 3 n y 
C20 C9 A0Q doub 4 n y 
C23 C24 A0Q doub 5 n y 
C9 C24 A0Q sing 6 n y 
C9 C8 A0Q sing 7 n n 
C8 O7 A0Q sing 8 n n 
O7 C3 A0Q sing 9 n n 
N18 C19 A0Q doub 10 n y 
N18 C17 A0Q sing 11 n y 
C19 C14 A0Q sing 12 n y 
C17 C16 A0Q doub 13 n y 
C4 C3 A0Q doub 14 n y 
C4 C5 A0Q sing 15 n y 
C3 C2 A0Q sing 16 n y 
C14 N12 A0Q sing 17 n n 
C14 C15 A0Q doub 18 n y 
N12 C11 A0Q sing 19 n n 
C16 C15 A0Q sing 20 n y 
C5 C6 A0Q doub 21 n y 
C2 C11 A0Q sing 22 n n 
C2 C1 A0Q doub 23 n y 
C11 O13 A0Q doub 24 n n 
C6 C1 A0Q sing 25 n y 
C6 N10 A0Q sing 26 n n 
N10 C29 A0Q sing 27 n n 
N10 C25 A0Q sing 28 n n 
C29 C28 A0Q sing 29 n n 
C28 N27 A0Q sing 30 n n 
C25 C26 A0Q sing 31 n n 
C26 N27 A0Q sing 32 n n 
N27 C30 A0Q sing 33 n n 
C1 H1 A0Q sing 34 n n 
C4 H2 A0Q sing 35 n n 
C5 H3 A0Q sing 36 n n 
C8 H4 A0Q sing 37 n n 
C8 H5 A0Q sing 38 n n 
N12 H6 A0Q sing 39 n n 
C15 H7 A0Q sing 40 n n 
C16 H8 A0Q sing 41 n n 
C17 H9 A0Q sing 42 n n 
C19 H10 A0Q sing 43 n n 
C20 H11 A0Q sing 44 n n 
C21 H12 A0Q sing 45 n n 
C22 H13 A0Q sing 46 n n 
C23 H14 A0Q sing 47 n n 
C24 H15 A0Q sing 48 n n 
C25 H16 A0Q sing 49 n n 
C25 H17 A0Q sing 50 n n 
C26 H18 A0Q sing 51 n n 
C26 H19 A0Q sing 52 n n 
C28 H21 A0Q sing 53 n n 
C28 H22 A0Q sing 54 n n 
C29 H23 A0Q sing 55 n n 
C29 H24 A0Q sing 56 n n 
C30 H25 A0Q sing 57 n n 
C30 H26 A0Q sing 58 n n 
C30 H27 A0Q sing 59 n n 
#
_atom_sites.entry_id                     5OQ7 
_atom_sites.fract_transf_matrix[1][1]    0.022119 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004203 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015094 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009311 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A0Q A 1 301 1272 A0Q A0Q . 
D 2 A0Q B 1 301 1271 A0Q A0Q . 
E 3 HOH A 1 401 2044 HOH HOH . 
E 3 HOH A 2 402 2087 HOH HOH . 
E 3 HOH A 3 403 2014 HOH HOH . 
E 3 HOH A 4 404 2009 HOH HOH . 
E 3 HOH A 5 405 2061 HOH HOH . 
E 3 HOH A 6 406 2084 HOH HOH . 
E 3 HOH A 7 407 2003 HOH HOH . 
E 3 HOH A 8 408 2081 HOH HOH . 
E 3 HOH A 9 409 2064 HOH HOH . 
E 3 HOH A 10 410 2026 HOH HOH . 
E 3 HOH A 11 411 2089 HOH HOH . 
E 3 HOH A 12 412 2056 HOH HOH . 
E 3 HOH A 13 413 2086 HOH HOH . 
E 3 HOH A 14 414 2065 HOH HOH . 
E 3 HOH A 15 415 2066 HOH HOH . 
E 3 HOH A 16 416 2063 HOH HOH . 
E 3 HOH A 17 417 2068 HOH HOH . 
E 3 HOH A 18 418 2024 HOH HOH . 
E 3 HOH A 19 419 2050 HOH HOH . 
E 3 HOH A 20 420 2042 HOH HOH . 
E 3 HOH A 21 421 2090 HOH HOH . 
E 3 HOH A 22 422 2011 HOH HOH . 
E 3 HOH A 23 423 2043 HOH HOH . 
E 3 HOH A 24 424 2034 HOH HOH . 
E 3 HOH A 25 425 2002 HOH HOH . 
E 3 HOH A 26 426 2085 HOH HOH . 
E 3 HOH A 27 427 2047 HOH HOH . 
E 3 HOH A 28 428 2038 HOH HOH . 
E 3 HOH A 29 429 2006 HOH HOH . 
E 3 HOH A 30 430 2075 HOH HOH . 
E 3 HOH A 31 431 2076 HOH HOH . 
E 3 HOH A 32 432 2078 HOH HOH . 
E 3 HOH A 33 433 2074 HOH HOH . 
E 3 HOH A 34 434 2071 HOH HOH . 
E 3 HOH A 35 435 2005 HOH HOH . 
E 3 HOH A 36 436 2048 HOH HOH . 
E 3 HOH A 37 437 2040 HOH HOH . 
E 3 HOH A 38 438 2037 HOH HOH . 
E 3 HOH A 39 439 2073 HOH HOH . 
E 3 HOH A 40 440 2028 HOH HOH . 
E 3 HOH A 41 441 2019 HOH HOH . 
E 3 HOH A 42 442 2091 HOH HOH . 
E 3 HOH A 43 443 2015 HOH HOH . 
E 3 HOH A 44 444 2035 HOH HOH . 
E 3 HOH A 45 445 2023 HOH HOH . 
E 3 HOH A 46 446 2016 HOH HOH . 
E 3 HOH A 47 447 2033 HOH HOH . 
E 3 HOH A 48 448 2036 HOH HOH . 
E 3 HOH A 49 449 2046 HOH HOH . 
E 3 HOH A 50 450 2072 HOH HOH . 
E 3 HOH A 51 451 2077 HOH HOH . 
E 3 HOH A 52 452 2004 HOH HOH . 
E 3 HOH A 53 453 2027 HOH HOH . 
E 3 HOH A 54 454 2008 HOH HOH . 
E 3 HOH A 55 455 2060 HOH HOH . 
E 3 HOH A 56 456 2041 HOH HOH . 
E 3 HOH A 57 457 2010 HOH HOH . 
E 3 HOH A 58 458 2054 HOH HOH . 
E 3 HOH A 59 459 2070 HOH HOH . 
E 3 HOH A 60 460 2069 HOH HOH . 
E 3 HOH A 61 461 2049 HOH HOH . 
E 3 HOH A 62 462 2020 HOH HOH . 
E 3 HOH A 63 463 2029 HOH HOH . 
E 3 HOH A 64 464 2017 HOH HOH . 
E 3 HOH A 65 465 2032 HOH HOH . 
E 3 HOH A 66 466 2007 HOH HOH . 
E 3 HOH A 67 467 2030 HOH HOH . 
E 3 HOH A 68 468 2062 HOH HOH . 
E 3 HOH A 69 469 2055 HOH HOH . 
E 3 HOH A 70 470 2001 HOH HOH . 
E 3 HOH A 71 471 2059 HOH HOH . 
E 3 HOH A 72 472 2031 HOH HOH . 
E 3 HOH A 73 473 2022 HOH HOH . 
E 3 HOH A 74 474 2058 HOH HOH . 
E 3 HOH A 75 475 2012 HOH HOH . 
E 3 HOH A 76 476 2051 HOH HOH . 
E 3 HOH A 77 477 2045 HOH HOH . 
E 3 HOH A 78 478 2080 HOH HOH . 
E 3 HOH A 79 479 2021 HOH HOH . 
E 3 HOH A 80 480 2083 HOH HOH . 
E 3 HOH A 81 481 2039 HOH HOH . 
E 3 HOH A 82 482 2013 HOH HOH . 
E 3 HOH A 83 483 2082 HOH HOH . 
E 3 HOH A 84 484 2088 HOH HOH . 
E 3 HOH A 85 485 2018 HOH HOH . 
E 3 HOH A 86 486 2025 HOH HOH . 
E 3 HOH A 87 487 2079 HOH HOH . 
E 3 HOH A 88 488 2052 HOH HOH . 
E 3 HOH A 89 489 2057 HOH HOH . 
E 3 HOH A 90 490 2053 HOH HOH . 
E 3 HOH A 91 491 2067 HOH HOH . 
F 3 HOH B 1 401 2035 HOH HOH . 
F 3 HOH B 2 402 2079 HOH HOH . 
F 3 HOH B 3 403 2020 HOH HOH . 
F 3 HOH B 4 404 2025 HOH HOH . 
F 3 HOH B 5 405 2037 HOH HOH . 
F 3 HOH B 6 406 2081 HOH HOH . 
F 3 HOH B 7 407 2057 HOH HOH . 
F 3 HOH B 8 408 2043 HOH HOH . 
F 3 HOH B 9 409 2083 HOH HOH . 
F 3 HOH B 10 410 2047 HOH HOH . 
F 3 HOH B 11 411 2013 HOH HOH . 
F 3 HOH B 12 412 2060 HOH HOH . 
F 3 HOH B 13 413 2075 HOH HOH . 
F 3 HOH B 14 414 2011 HOH HOH . 
F 3 HOH B 15 415 2039 HOH HOH . 
F 3 HOH B 16 416 2048 HOH HOH . 
F 3 HOH B 17 417 2031 HOH HOH . 
F 3 HOH B 18 418 2061 HOH HOH . 
F 3 HOH B 19 419 2015 HOH HOH . 
F 3 HOH B 20 420 2027 HOH HOH . 
F 3 HOH B 21 421 2026 HOH HOH . 
F 3 HOH B 22 422 2077 HOH HOH . 
F 3 HOH B 23 423 2046 HOH HOH . 
F 3 HOH B 24 424 2038 HOH HOH . 
F 3 HOH B 25 425 2002 HOH HOH . 
F 3 HOH B 26 426 2066 HOH HOH . 
F 3 HOH B 27 427 2071 HOH HOH . 
F 3 HOH B 28 428 2042 HOH HOH . 
F 3 HOH B 29 429 2028 HOH HOH . 
F 3 HOH B 30 430 2023 HOH HOH . 
F 3 HOH B 31 431 2082 HOH HOH . 
F 3 HOH B 32 432 2010 HOH HOH . 
F 3 HOH B 33 433 2009 HOH HOH . 
F 3 HOH B 34 434 2044 HOH HOH . 
F 3 HOH B 35 435 2041 HOH HOH . 
F 3 HOH B 36 436 2016 HOH HOH . 
F 3 HOH B 37 437 2064 HOH HOH . 
F 3 HOH B 38 438 2065 HOH HOH . 
F 3 HOH B 39 439 2003 HOH HOH . 
F 3 HOH B 40 440 2073 HOH HOH . 
F 3 HOH B 41 441 2070 HOH HOH . 
F 3 HOH B 42 442 2030 HOH HOH . 
F 3 HOH B 43 443 2040 HOH HOH . 
F 3 HOH B 44 444 2084 HOH HOH . 
F 3 HOH B 45 445 2018 HOH HOH . 
F 3 HOH B 46 446 2001 HOH HOH . 
F 3 HOH B 47 447 2062 HOH HOH . 
F 3 HOH B 48 448 2017 HOH HOH . 
F 3 HOH B 49 449 2074 HOH HOH . 
F 3 HOH B 50 450 2021 HOH HOH . 
F 3 HOH B 51 451 2022 HOH HOH . 
F 3 HOH B 52 452 2006 HOH HOH . 
F 3 HOH B 53 453 2067 HOH HOH . 
F 3 HOH B 54 454 2012 HOH HOH . 
F 3 HOH B 55 455 2069 HOH HOH . 
F 3 HOH B 56 456 2036 HOH HOH . 
F 3 HOH B 57 457 2063 HOH HOH . 
F 3 HOH B 58 458 2024 HOH HOH . 
F 3 HOH B 59 459 2005 HOH HOH . 
F 3 HOH B 60 460 2072 HOH HOH . 
F 3 HOH B 61 461 2049 HOH HOH . 
F 3 HOH B 62 462 2029 HOH HOH . 
F 3 HOH B 63 463 2056 HOH HOH . 
F 3 HOH B 64 464 2045 HOH HOH . 
F 3 HOH B 65 465 2085 HOH HOH . 
F 3 HOH B 66 466 2055 HOH HOH . 
F 3 HOH B 67 467 2050 HOH HOH . 
F 3 HOH B 68 468 2053 HOH HOH . 
F 3 HOH B 69 469 2014 HOH HOH . 
F 3 HOH B 70 470 2068 HOH HOH . 
F 3 HOH B 71 471 2007 HOH HOH . 
F 3 HOH B 72 472 2033 HOH HOH . 
F 3 HOH B 73 473 2080 HOH HOH . 
F 3 HOH B 74 474 2004 HOH HOH . 
F 3 HOH B 75 475 2032 HOH HOH . 
F 3 HOH B 76 476 2008 HOH HOH . 
F 3 HOH B 77 477 2076 HOH HOH . 
F 3 HOH B 78 478 2086 HOH HOH . 
F 3 HOH B 79 479 2058 HOH HOH . 
F 3 HOH B 80 480 2034 HOH HOH . 
F 3 HOH B 81 481 2078 HOH HOH . 
F 3 HOH B 82 482 2054 HOH HOH . 
F 3 HOH B 83 483 2059 HOH HOH . 
F 3 HOH B 84 484 2051 HOH HOH . 
F 3 HOH B 85 485 2019 HOH HOH . 
F 3 HOH B 86 486 2052 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A0Q . . . D 2 -9.127 -0.854 73.799 1 43.61 ? C1 A0Q 301 B 1 
HETATM 2 C C2 A0Q . . . D 2 -8.181 -1.4 72.966 1 45.98 ? C2 A0Q 301 B 1 
HETATM 3 C C3 A0Q . . . D 2 -8.598 -2.29 71.989 1 45.07 ? C3 A0Q 301 B 1 
HETATM 4 C C4 A0Q . . . D 2 -9.958 -2.627 71.861 1 47.94 ? C4 A0Q 301 B 1 
HETATM 5 C C5 A0Q . . . D 2 -10.926 -2.069 72.701 1 41.85 ? C5 A0Q 301 B 1 
HETATM 6 C C6 A0Q . . . D 2 -10.468 -1.191 73.663 1 43.34 ? C6 A0Q 301 B 1 
HETATM 7 O O7 A0Q . . . D 2 -7.609 -2.8 71.239 1 51.71 ? O7 A0Q 301 B 1 
HETATM 8 C C8 A0Q . . . D 2 -7.836 -3.429 69.908 1 52.6 ? C8 A0Q 301 B 1 
HETATM 9 C C9 A0Q . . . D 2 -6.458 -3.801 69.337 1 47.98 ? C9 A0Q 301 B 1 
HETATM 10 N N10 A0Q . . . D 2 -11.3 -0.567 74.534 1 48.56 ? N10 A0Q 301 B 1 
HETATM 11 C C11 A0Q . . . D 2 -6.731 -0.972 73.149 1 39.62 ? C11 A0Q 301 B 1 
HETATM 12 N N12 A0Q . . . D 2 -5.72 -1.512 72.437 1 40.72 ? N12 A0Q 301 B 1 
HETATM 13 O O13 A0Q . . . D 2 -6.534 -0.114 73.977 1 41.69 ? O13 A0Q 301 B 1 
HETATM 14 C C14 A0Q . . . D 2 -4.423 -0.968 72.163 1 34.43 ? C14 A0Q 301 B 1 
HETATM 15 C C15 A0Q . . . D 2 -3.839 0.098 72.814 1 35.78 ? C15 A0Q 301 B 1 
HETATM 16 C C16 A0Q . . . D 2 -2.562 0.505 72.465 1 33.23 ? C16 A0Q 301 B 1 
HETATM 17 C C17 A0Q . . . D 2 -1.847 -0.151 71.474 1 32.51 ? C17 A0Q 301 B 1 
HETATM 18 N N18 A0Q . . . D 2 -2.431 -1.183 70.855 1 31.26 ? N18 A0Q 301 B 1 
HETATM 19 C C19 A0Q . . . D 2 -3.652 -1.603 71.2 1 33.63 ? C19 A0Q 301 B 1 
HETATM 20 C C20 A0Q . . . D 2 -5.98 -3.214 68.18 1 49.92 ? C20 A0Q 301 B 1 
HETATM 21 C C21 A0Q . . . D 2 -4.712 -3.545 67.671 1 51.59 ? C21 A0Q 301 B 1 
HETATM 22 C C22 A0Q . . . D 2 -3.926 -4.491 68.338 1 52.35 ? C22 A0Q 301 B 1 
HETATM 23 C C23 A0Q . . . D 2 -4.399 -5.091 69.516 1 46.6 ? C23 A0Q 301 B 1 
HETATM 24 C C24 A0Q . . . D 2 -5.65 -4.739 70.012 1 53.24 ? C24 A0Q 301 B 1 
HETATM 25 C C25 A0Q . . . D 2 -10.677 0.165 75.683 1 49.34 ? C25 A0Q 301 B 1 
HETATM 26 C C26 A0Q . . . D 2 -11.313 -0.32 76.952 1 50.37 ? C26 A0Q 301 B 1 
HETATM 27 N N27 A0Q . . . D 2 -12.765 -0.16 76.77 1 56.14 ? N27 A0Q 301 B 1 
HETATM 28 C C28 A0Q . . . D 2 -13.331 -1.038 75.732 1 56.83 ? C28 A0Q 301 B 1 
HETATM 29 C C29 A0Q . . . D 2 -12.772 -0.572 74.397 1 55.51 ? C29 A0Q 301 B 1 
HETATM 30 C C30 A0Q . . . D 2 -13.544 -0.103 78.004 1 57.48 ? C30 A0Q 301 B 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           30 
#