data_5OQ8 # _model_server_result.job_id F_nDuBZgNaX3hZI4P6_k5g _model_server_result.datetime_utc '2024-11-23 12:29:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5OQ8 # _exptl.entry_id 5OQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-methylpiperazin-1-yl)-2-phenylmethoxy-~{N}-pyridin-3-yl-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.58 _cell.angle_gamma 90 _cell.entry_id 5OQ8 _cell.length_a 44.88 _cell.length_b 65.86 _cell.length_c 55.06 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H26 N4 O2' _chem_comp.formula_weight 402.489 _chem_comp.id A0Q _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-methylpiperazin-1-yl)-2-phenylmethoxy-~{N}-pyridin-3-yl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 A0Q doub 1 n y C21 C20 A0Q sing 2 n y C22 C23 A0Q sing 3 n y C20 C9 A0Q doub 4 n y C23 C24 A0Q doub 5 n y C9 C24 A0Q sing 6 n y C9 C8 A0Q sing 7 n n C8 O7 A0Q sing 8 n n O7 C3 A0Q sing 9 n n N18 C19 A0Q doub 10 n y N18 C17 A0Q sing 11 n y C19 C14 A0Q sing 12 n y C17 C16 A0Q doub 13 n y C4 C3 A0Q doub 14 n y C4 C5 A0Q sing 15 n y C3 C2 A0Q sing 16 n y C14 N12 A0Q sing 17 n n C14 C15 A0Q doub 18 n y N12 C11 A0Q sing 19 n n C16 C15 A0Q sing 20 n y C5 C6 A0Q doub 21 n y C2 C11 A0Q sing 22 n n C2 C1 A0Q doub 23 n y C11 O13 A0Q doub 24 n n C6 C1 A0Q sing 25 n y C6 N10 A0Q sing 26 n n N10 C29 A0Q sing 27 n n N10 C25 A0Q sing 28 n n C29 C28 A0Q sing 29 n n C28 N27 A0Q sing 30 n n C25 C26 A0Q sing 31 n n C26 N27 A0Q sing 32 n n N27 C30 A0Q sing 33 n n C1 H1 A0Q sing 34 n n C4 H2 A0Q sing 35 n n C5 H3 A0Q sing 36 n n C8 H4 A0Q sing 37 n n C8 H5 A0Q sing 38 n n N12 H6 A0Q sing 39 n n C15 H7 A0Q sing 40 n n C16 H8 A0Q sing 41 n n C17 H9 A0Q sing 42 n n C19 H10 A0Q sing 43 n n C20 H11 A0Q sing 44 n n C21 H12 A0Q sing 45 n n C22 H13 A0Q sing 46 n n C23 H14 A0Q sing 47 n n C24 H15 A0Q sing 48 n n C25 H16 A0Q sing 49 n n C25 H17 A0Q sing 50 n n C26 H18 A0Q sing 51 n n C26 H19 A0Q sing 52 n n C28 H21 A0Q sing 53 n n C28 H22 A0Q sing 54 n n C29 H23 A0Q sing 55 n n C29 H24 A0Q sing 56 n n C30 H25 A0Q sing 57 n n C30 H26 A0Q sing 58 n n C30 H27 A0Q sing 59 n n # _atom_sites.entry_id 5OQ8 _atom_sites.fract_transf_matrix[1][1] 0.022282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003761 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A0Q A 1 301 1271 A0Q A0Q . C 3 HOH A 1 401 2091 HOH HOH . C 3 HOH A 2 402 2007 HOH HOH . C 3 HOH A 3 403 2082 HOH HOH . C 3 HOH A 4 404 2095 HOH HOH . C 3 HOH A 5 405 2048 HOH HOH . C 3 HOH A 6 406 2033 HOH HOH . C 3 HOH A 7 407 2053 HOH HOH . C 3 HOH A 8 408 2071 HOH HOH . C 3 HOH A 9 409 2030 HOH HOH . C 3 HOH A 10 410 2072 HOH HOH . C 3 HOH A 11 411 2004 HOH HOH . C 3 HOH A 12 412 2021 HOH HOH . C 3 HOH A 13 413 2005 HOH HOH . C 3 HOH A 14 414 2066 HOH HOH . C 3 HOH A 15 415 2023 HOH HOH . C 3 HOH A 16 416 2081 HOH HOH . C 3 HOH A 17 417 2144 HOH HOH . C 3 HOH A 18 418 2116 HOH HOH . C 3 HOH A 19 419 2109 HOH HOH . C 3 HOH A 20 420 2107 HOH HOH . C 3 HOH A 21 421 2125 HOH HOH . C 3 HOH A 22 422 2047 HOH HOH . C 3 HOH A 23 423 2133 HOH HOH . C 3 HOH A 24 424 2101 HOH HOH . C 3 HOH A 25 425 2105 HOH HOH . C 3 HOH A 26 426 2138 HOH HOH . C 3 HOH A 27 427 2061 HOH HOH . C 3 HOH A 28 428 2115 HOH HOH . C 3 HOH A 29 429 2008 HOH HOH . C 3 HOH A 30 430 2067 HOH HOH . C 3 HOH A 31 431 2059 HOH HOH . C 3 HOH A 32 432 2104 HOH HOH . C 3 HOH A 33 433 2139 HOH HOH . C 3 HOH A 34 434 2058 HOH HOH . C 3 HOH A 35 435 2077 HOH HOH . C 3 HOH A 36 436 2026 HOH HOH . C 3 HOH A 37 437 2143 HOH HOH . C 3 HOH A 38 438 2100 HOH HOH . C 3 HOH A 39 439 2015 HOH HOH . C 3 HOH A 40 440 2087 HOH HOH . C 3 HOH A 41 441 2013 HOH HOH . C 3 HOH A 42 442 2052 HOH HOH . C 3 HOH A 43 443 2108 HOH HOH . C 3 HOH A 44 444 2146 HOH HOH . C 3 HOH A 45 445 2025 HOH HOH . C 3 HOH A 46 446 2112 HOH HOH . C 3 HOH A 47 447 2001 HOH HOH . C 3 HOH A 48 448 2016 HOH HOH . C 3 HOH A 49 449 2014 HOH HOH . C 3 HOH A 50 450 2070 HOH HOH . C 3 HOH A 51 451 2002 HOH HOH . C 3 HOH A 52 452 2024 HOH HOH . C 3 HOH A 53 453 2010 HOH HOH . C 3 HOH A 54 454 2045 HOH HOH . C 3 HOH A 55 455 2126 HOH HOH . C 3 HOH A 56 456 2130 HOH HOH . C 3 HOH A 57 457 2049 HOH HOH . C 3 HOH A 58 458 2039 HOH HOH . C 3 HOH A 59 459 2120 HOH HOH . C 3 HOH A 60 460 2128 HOH HOH . C 3 HOH A 61 461 2098 HOH HOH . C 3 HOH A 62 462 2017 HOH HOH . C 3 HOH A 63 463 2127 HOH HOH . C 3 HOH A 64 464 2102 HOH HOH . C 3 HOH A 65 465 2103 HOH HOH . C 3 HOH A 66 466 2117 HOH HOH . C 3 HOH A 67 467 2031 HOH HOH . C 3 HOH A 68 468 2042 HOH HOH . C 3 HOH A 69 469 2113 HOH HOH . C 3 HOH A 70 470 2032 HOH HOH . C 3 HOH A 71 471 2011 HOH HOH . C 3 HOH A 72 472 2009 HOH HOH . C 3 HOH A 73 473 2142 HOH HOH . C 3 HOH A 74 474 2051 HOH HOH . C 3 HOH A 75 475 2134 HOH HOH . C 3 HOH A 76 476 2122 HOH HOH . C 3 HOH A 77 477 2141 HOH HOH . C 3 HOH A 78 478 2118 HOH HOH . C 3 HOH A 79 479 2089 HOH HOH . C 3 HOH A 80 480 2037 HOH HOH . C 3 HOH A 81 481 2036 HOH HOH . C 3 HOH A 82 482 2131 HOH HOH . C 3 HOH A 83 483 2137 HOH HOH . C 3 HOH A 84 484 2020 HOH HOH . C 3 HOH A 85 485 2038 HOH HOH . C 3 HOH A 86 486 2083 HOH HOH . C 3 HOH A 87 487 2124 HOH HOH . C 3 HOH A 88 488 2055 HOH HOH . C 3 HOH A 89 489 2029 HOH HOH . C 3 HOH A 90 490 2028 HOH HOH . C 3 HOH A 91 491 2076 HOH HOH . C 3 HOH A 92 492 2063 HOH HOH . C 3 HOH A 93 493 2064 HOH HOH . C 3 HOH A 94 494 2092 HOH HOH . C 3 HOH A 95 495 2140 HOH HOH . C 3 HOH A 96 496 2027 HOH HOH . C 3 HOH A 97 497 2006 HOH HOH . C 3 HOH A 98 498 2088 HOH HOH . C 3 HOH A 99 499 2084 HOH HOH . C 3 HOH A 100 500 2034 HOH HOH . C 3 HOH A 101 501 2136 HOH HOH . C 3 HOH A 102 502 2022 HOH HOH . C 3 HOH A 103 503 2003 HOH HOH . C 3 HOH A 104 504 2056 HOH HOH . C 3 HOH A 105 505 2132 HOH HOH . C 3 HOH A 106 506 2044 HOH HOH . C 3 HOH A 107 507 2074 HOH HOH . C 3 HOH A 108 508 2123 HOH HOH . C 3 HOH A 109 509 2106 HOH HOH . C 3 HOH A 110 510 2079 HOH HOH . C 3 HOH A 111 511 2114 HOH HOH . C 3 HOH A 112 512 2068 HOH HOH . C 3 HOH A 113 513 2043 HOH HOH . C 3 HOH A 114 514 2073 HOH HOH . C 3 HOH A 115 515 2094 HOH HOH . C 3 HOH A 116 516 2075 HOH HOH . C 3 HOH A 117 517 2018 HOH HOH . C 3 HOH A 118 518 2065 HOH HOH . C 3 HOH A 119 519 2080 HOH HOH . C 3 HOH A 120 520 2019 HOH HOH . C 3 HOH A 121 521 2069 HOH HOH . C 3 HOH A 122 522 2054 HOH HOH . C 3 HOH A 123 523 2062 HOH HOH . C 3 HOH A 124 524 2050 HOH HOH . C 3 HOH A 125 525 2046 HOH HOH . C 3 HOH A 126 526 2110 HOH HOH . C 3 HOH A 127 527 2093 HOH HOH . C 3 HOH A 128 528 2035 HOH HOH . C 3 HOH A 129 529 2057 HOH HOH . C 3 HOH A 130 530 2145 HOH HOH . C 3 HOH A 131 531 2090 HOH HOH . C 3 HOH A 132 532 2012 HOH HOH . C 3 HOH A 133 533 2097 HOH HOH . C 3 HOH A 134 534 2085 HOH HOH . C 3 HOH A 135 535 2041 HOH HOH . C 3 HOH A 136 536 2040 HOH HOH . C 3 HOH A 137 537 2078 HOH HOH . C 3 HOH A 138 538 2119 HOH HOH . C 3 HOH A 139 539 2121 HOH HOH . C 3 HOH A 140 540 2111 HOH HOH . C 3 HOH A 141 541 2086 HOH HOH . C 3 HOH A 142 542 2096 HOH HOH . C 3 HOH A 143 543 2135 HOH HOH . C 3 HOH A 144 544 2129 HOH HOH . C 3 HOH A 145 545 2099 HOH HOH . C 3 HOH A 146 546 2060 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A0Q . . . B 2 1.277 -4.573 19.342 1 36.4 ? C1 A0Q 301 A 1 HETATM 2 C C2 A0Q . . . B 2 2.245 -4.961 18.474 1 37.84 ? C2 A0Q 301 A 1 HETATM 3 C C3 A0Q . . . B 2 1.949 -5.769 17.401 1 40.31 ? C3 A0Q 301 A 1 HETATM 4 C C4 A0Q . . . B 2 0.676 -6.287 17.219 1 39.04 ? C4 A0Q 301 A 1 HETATM 5 C C5 A0Q . . . B 2 -0.301 -5.923 18.112 1 41.66 ? C5 A0Q 301 A 1 HETATM 6 C C6 A0Q . . . B 2 0.018 -5.062 19.18 1 42.64 ? C6 A0Q 301 A 1 HETATM 7 O O7 A0Q . . . B 2 2.988 -6.073 16.588 1 43.66 ? O7 A0Q 301 A 1 HETATM 8 C C8 A0Q . . . B 2 2.68 -6.937 15.472 1 50.21 ? C8 A0Q 301 A 1 HETATM 9 C C9 A0Q . . . B 2 4.031 -7.209 14.748 1 55.34 ? C9 A0Q 301 A 1 HETATM 10 N N10 A0Q . . . B 2 -0.927 -4.712 20.133 1 48.5 ? N10 A0Q 301 A 1 HETATM 11 C C11 A0Q . . . B 2 3.623 -4.451 18.654 1 39.16 ? C11 A0Q 301 A 1 HETATM 12 N N12 A0Q . . . B 2 4.614 -4.993 17.932 1 38.53 ? N12 A0Q 301 A 1 HETATM 13 O O13 A0Q . . . B 2 3.83 -3.56 19.469 1 39.61 ? O13 A0Q 301 A 1 HETATM 14 C C14 A0Q . . . B 2 5.885 -4.476 17.749 1 34 ? C14 A0Q 301 A 1 HETATM 15 C C15 A0Q . . . B 2 6.351 -3.398 18.418 1 33.74 ? C15 A0Q 301 A 1 HETATM 16 C C16 A0Q . . . B 2 7.62 -2.957 18.175 1 34.68 ? C16 A0Q 301 A 1 HETATM 17 C C17 A0Q . . . B 2 8.374 -3.598 17.213 1 39.2 ? C17 A0Q 301 A 1 HETATM 18 N N18 A0Q . . . B 2 7.891 -4.633 16.563 1 32.18 ? N18 A0Q 301 A 1 HETATM 19 C C19 A0Q . . . B 2 6.679 -5.103 16.812 1 30.7 ? C19 A0Q 301 A 1 HETATM 20 C C20 A0Q . . . B 2 4.468 -6.364 13.722 1 49.12 ? C20 A0Q 301 A 1 HETATM 21 C C21 A0Q . . . B 2 5.695 -6.568 13.122 1 51.16 ? C21 A0Q 301 A 1 HETATM 22 C C22 A0Q . . . B 2 6.502 -7.64 13.498 1 47.67 ? C22 A0Q 301 A 1 HETATM 23 C C23 A0Q . . . B 2 6.059 -8.477 14.505 1 47.68 ? C23 A0Q 301 A 1 HETATM 24 C C24 A0Q . . . B 2 4.839 -8.269 15.141 1 48.92 ? C24 A0Q 301 A 1 HETATM 25 C C25 A0Q . . . B 2 -0.37 -4.315 21.448 1 54.82 ? C25 A0Q 301 A 1 HETATM 26 C C26 A0Q . . . B 2 -1.401 -3.673 22.33 1 53.91 ? C26 A0Q 301 A 1 HETATM 27 N N27 A0Q . . . B 2 -2.648 -4.454 22.234 1 53.33 ? N27 A0Q 301 A 1 HETATM 28 C C28 A0Q . . . B 2 -3.223 -4.472 20.866 1 52.93 ? C28 A0Q 301 A 1 HETATM 29 C C29 A0Q . . . B 2 -2.296 -5.255 19.977 1 52.38 ? C29 A0Q 301 A 1 HETATM 30 C C30 A0Q . . . B 2 -3.656 -3.832 23.101 1 47.29 ? C30 A0Q 301 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #