data_5OQO # _model_server_result.job_id '_MQR8x5-Ica_D8LLAMQ9SA' _model_server_result.datetime_utc '2025-03-04 16:55:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 5OQO # _exptl.entry_id 5OQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OQO _cell.length_a 88.803 _cell.length_b 117.94 _cell.length_c 154.968 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DG-DC PAIR' hydrog1 C O6 DG 1 C DG 1 1_555 D N4 DC 18 D DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N1 DA 2 C DA 2 1_555 D N3 DT 17 D DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N6 DA 2 C DA 2 1_555 D O4 DT 17 D DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 DT 3 C DT 3 1_555 D N1 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O4 DT 3 C DT 3 1_555 D N6 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog6 C N1 DG 4 C DG 4 1_555 D N1 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog7 C O6 DG 4 C DG 4 1_555 D N6 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog8 C N3 DT 5 C DT 5 1_555 D N1 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog9 C N1 DG 6 C DG 6 1_555 D N1 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog10 C O6 DG 6 C DG 6 1_555 D N6 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog11 C N3 DT 7 C DT 7 1_555 D N1 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog12 C N1 DA 8 C DA 8 1_555 D N3 DT 11 D DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 DG 9 C DG 9 1_555 D N3 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 DG 9 C DG 9 1_555 D O2 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 DG 9 C DG 9 1_555 D N4 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N3 DC 10 C DC 10 1_555 D N1 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N4 DC 10 C DC 10 1_555 D O6 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O2 DC 10 C DC 10 1_555 D N2 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N3 DT 11 C DT 11 1_555 D N1 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C O4 DT 11 C DT 11 1_555 D N6 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog21 C N1 DA 12 C DA 12 1_555 D N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog22 C N6 DA 12 C DA 12 1_555 D O6 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog23 C N3 DC 13 C DC 13 1_555 D N2 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog24 C O2 DC 13 C DC 13 1_555 D N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N1 DA 14 C DA 14 1_555 D N3 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N6 DA 14 C DA 14 1_555 D O4 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 DC 15 C DC 15 1_555 D N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N4 DC 15 C DC 15 1_555 D O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O2 DC 15 C DC 15 1_555 D N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog30 C N1 DA 16 C DA 16 1_555 D N3 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N3 DT 17 C DT 17 1_555 D N1 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O4 DT 17 C DT 17 1_555 D N6 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog33 C N3 DC 18 C DC 18 1_555 D N2 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 504 n n C C2 TRS sing 505 n n C C3 TRS sing 506 n n C N TRS sing 507 n n C1 O1 TRS sing 508 n n C1 H11 TRS sing 509 n n C1 H12 TRS sing 510 n n C2 O2 TRS sing 511 n n C2 H21 TRS sing 512 n n C2 H22 TRS sing 513 n n C3 O3 TRS sing 514 n n C3 H31 TRS sing 515 n n C3 H32 TRS sing 516 n n N HN1 TRS sing 517 n n N HN2 TRS sing 518 n n N HN3 TRS sing 519 n n O1 HO1 TRS sing 520 n n O2 HO2 TRS sing 521 n n O3 HO3 TRS sing 522 n n # _atom_sites.entry_id 5OQO _atom_sites.fract_transf_matrix[1][1] 0.011261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 TRS A 1 1001 1 TRS TRS . F 4 TRS A 1 1002 2 TRS TRS . G 5 PGE A 1 1003 1 PGE PGE . H 5 PGE A 1 1004 2 PGE PGE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . F 4 -18.349 -23.272 51.573 1 14.51 ? C TRS 1002 A 1 HETATM 2 C C1 TRS . . . F 4 -16.826 -23.26 51.606 1 16.23 ? C1 TRS 1002 A 1 HETATM 3 C C2 TRS . . . F 4 -18.912 -23.37 52.978 1 33.36 ? C2 TRS 1002 A 1 HETATM 4 C C3 TRS . . . F 4 -18.856 -24.423 50.72 1 27.55 ? C3 TRS 1002 A 1 HETATM 5 N N TRS . . . F 4 -18.818 -22.014 50.994 1 38.6 ? N TRS 1002 A 1 HETATM 6 O O1 TRS . . . F 4 -16.351 -24.422 52.23 1 28.36 ? O1 TRS 1002 A 1 HETATM 7 O O2 TRS . . . F 4 -18.305 -22.388 53.785 1 62.17 ? O2 TRS 1002 A 1 HETATM 8 O O3 TRS . . . F 4 -18.391 -24.29 49.397 1 57.15 ? O3 TRS 1002 A 1 HETATM 9 H H11 TRS . . . F 4 -16.478 -22.383 52.15 1 19.47 ? H11 TRS 1002 A 1 HETATM 10 H H12 TRS . . . F 4 -16.438 -23.205 50.589 1 19.47 ? H12 TRS 1002 A 1 HETATM 11 H H21 TRS . . . F 4 -19.991 -23.217 52.956 1 40.04 ? H21 TRS 1002 A 1 HETATM 12 H H22 TRS . . . F 4 -18.715 -24.361 53.388 1 40.04 ? H22 TRS 1002 A 1 HETATM 13 H H31 TRS . . . F 4 -19.946 -24.431 50.726 1 33.05 ? H31 TRS 1002 A 1 HETATM 14 H H32 TRS . . . F 4 -18.508 -25.368 51.137 1 33.05 ? H32 TRS 1002 A 1 HETATM 15 H HN1 TRS . . . F 4 -19.828 -21.936 50.943 1 46.32 ? HN1 TRS 1002 A 1 HETATM 16 H HN2 TRS . . . F 4 -18.361 -21.191 51.375 1 46.32 ? HN2 TRS 1002 A 1 HETATM 17 H HN3 TRS . . . F 4 -18.517 -22.05 50.032 1 46.32 ? HN3 TRS 1002 A 1 HETATM 18 H HO1 TRS . . . F 4 -15.371 -24.406 52.246 1 34.04 ? HO1 TRS 1002 A 1 HETATM 19 H HO2 TRS . . . F 4 -18.664 -22.445 54.695 1 74.61 ? HO2 TRS 1002 A 1 HETATM 20 H HO3 TRS . . . F 4 -18.724 -25.038 48.858 1 68.58 ? HO3 TRS 1002 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #