data_5OQO # _model_server_result.job_id aaTSDpUkVNKOIAZF7K04xg _model_server_result.datetime_utc '2025-03-04 17:22:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oqo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1004}' # _entry.id 5OQO # _exptl.entry_id 5OQO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OQO _cell.length_a 88.803 _cell.length_b 117.94 _cell.length_c 154.968 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OQO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog 'DG-DC PAIR' hydrog1 C O6 DG 1 C DG 1 1_555 D N4 DC 18 D DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N1 DA 2 C DA 2 1_555 D N3 DT 17 D DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N6 DA 2 C DA 2 1_555 D O4 DT 17 D DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N3 DT 3 C DT 3 1_555 D N1 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C O4 DT 3 C DT 3 1_555 D N6 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog6 C N1 DG 4 C DG 4 1_555 D N1 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog7 C O6 DG 4 C DG 4 1_555 D N6 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog8 C N3 DT 5 C DT 5 1_555 D N1 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog9 C N1 DG 6 C DG 6 1_555 D N1 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog10 C O6 DG 6 C DG 6 1_555 D N6 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog11 C N3 DT 7 C DT 7 1_555 D N1 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog12 C N1 DA 8 C DA 8 1_555 D N3 DT 11 D DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N1 DG 9 C DG 9 1_555 D N3 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N2 DG 9 C DG 9 1_555 D O2 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O6 DG 9 C DG 9 1_555 D N4 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N3 DC 10 C DC 10 1_555 D N1 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N4 DC 10 C DC 10 1_555 D O6 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C O2 DC 10 C DC 10 1_555 D N2 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C N3 DT 11 C DT 11 1_555 D N1 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C O4 DT 11 C DT 11 1_555 D N6 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog21 C N1 DA 12 C DA 12 1_555 D N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_8_PAIR hydrog22 C N6 DA 12 C DA 12 1_555 D O6 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog23 C N3 DC 13 C DC 13 1_555 D N2 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog24 C O2 DC 13 C DC 13 1_555 D N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N1 DA 14 C DA 14 1_555 D N3 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N6 DA 14 C DA 14 1_555 D O4 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 DC 15 C DC 15 1_555 D N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N4 DC 15 C DC 15 1_555 D O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O2 DC 15 C DC 15 1_555 D N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DT PAIR' hydrog30 C N1 DA 16 C DA 16 1_555 D N3 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N3 DT 17 C DT 17 1_555 D N1 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O4 DT 17 C DT 17 1_555 D N6 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DC-DG PAIR' hydrog33 C N3 DC 18 C DC 18 1_555 D N2 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 384 n n C1 C2 PGE sing 385 n n C1 H1 PGE sing 386 n n C1 H12 PGE sing 387 n n O1 HO1 PGE sing 388 n n C2 O2 PGE sing 389 n n C2 H2 PGE sing 390 n n C2 H22 PGE sing 391 n n O2 C3 PGE sing 392 n n C3 C4 PGE sing 393 n n C3 H3 PGE sing 394 n n C3 H32 PGE sing 395 n n C4 O3 PGE sing 396 n n C4 H4 PGE sing 397 n n C4 H42 PGE sing 398 n n O4 C6 PGE sing 399 n n O4 HO4 PGE sing 400 n n C6 C5 PGE sing 401 n n C6 H6 PGE sing 402 n n C6 H62 PGE sing 403 n n C5 O3 PGE sing 404 n n C5 H5 PGE sing 405 n n C5 H52 PGE sing 406 n n # _atom_sites.entry_id 5OQO _atom_sites.fract_transf_matrix[1][1] 0.011261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 TRS A 1 1001 1 TRS TRS . F 4 TRS A 1 1002 2 TRS TRS . G 5 PGE A 1 1003 1 PGE PGE . H 5 PGE A 1 1004 2 PGE PGE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . H 5 -25.659 -1.575 72.828 1 90.19 ? C1 PGE 1004 A 1 HETATM 2 O O1 PGE . . . H 5 -26.251 -2.768 72.389 1 64.41 ? O1 PGE 1004 A 1 HETATM 3 C C2 PGE . . . H 5 -24.619 -1.9 73.865 1 90.11 ? C2 PGE 1004 A 1 HETATM 4 O O2 PGE . . . H 5 -23.572 -0.959 73.838 1 113.49 ? O2 PGE 1004 A 1 HETATM 5 C C3 PGE . . . H 5 -22.946 -0.788 75.087 1 115.95 ? C3 PGE 1004 A 1 HETATM 6 C C4 PGE . . . H 5 -22.24 -2.025 75.53 1 84.66 ? C4 PGE 1004 A 1 HETATM 7 O O4 PGE . . . H 5 -17.78 -2.829 75.006 1 72.99 ? O4 PGE 1004 A 1 HETATM 8 C C6 PGE . . . H 5 -18.711 -2.762 76.051 1 92.23 ? C6 PGE 1004 A 1 HETATM 9 C C5 PGE . . . H 5 -20.092 -2.908 75.483 1 81.49 ? C5 PGE 1004 A 1 HETATM 10 O O3 PGE . . . H 5 -20.894 -1.801 75.836 1 98.01 ? O3 PGE 1004 A 1 HETATM 11 H H1 PGE . . . H 5 -25.254 -1.067 72.108 1 108.23 ? H1 PGE 1004 A 1 HETATM 12 H H12 PGE . . . H 5 -26.327 -0.989 73.218 1 108.23 ? H12 PGE 1004 A 1 HETATM 13 H HO1 PGE . . . H 5 -27.089 -2.635 72.342 1 77.29 ? HO1 PGE 1004 A 1 HETATM 14 H H2 PGE . . . H 5 -25.036 -1.888 74.741 1 108.13 ? H2 PGE 1004 A 1 HETATM 15 H H22 PGE . . . H 5 -24.268 -2.799 73.771 1 108.13 ? H22 PGE 1004 A 1 HETATM 16 H H3 PGE . . . H 5 -22.34 -0.032 75.057 1 139.14 ? H3 PGE 1004 A 1 HETATM 17 H H32 PGE . . . H 5 -23.608 -0.543 75.754 1 139.14 ? H32 PGE 1004 A 1 HETATM 18 H H4 PGE . . . H 5 -22.698 -2.394 76.3 1 101.59 ? H4 PGE 1004 A 1 HETATM 19 H H42 PGE . . . H 5 -22.32 -2.712 74.85 1 101.59 ? H42 PGE 1004 A 1 HETATM 20 H HO4 PGE . . . H 5 -17.123 -2.334 75.218 1 87.59 ? HO4 PGE 1004 A 1 HETATM 21 H H6 PGE . . . H 5 -18.644 -1.908 76.507 1 110.67 ? H6 PGE 1004 A 1 HETATM 22 H H62 PGE . . . H 5 -18.562 -3.433 76.735 1 110.67 ? H62 PGE 1004 A 1 HETATM 23 H H5 PGE . . . H 5 -20.525 -3.733 75.753 1 97.79 ? H5 PGE 1004 A 1 HETATM 24 H H52 PGE . . . H 5 -20.024 -2.962 74.517 1 97.79 ? H52 PGE 1004 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #