data_5OQP # _model_server_result.job_id 55La7WwwdxSq37B4htK2Hg _model_server_result.datetime_utc '2024-11-05 00:26:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 5OQP # _exptl.entry_id 5OQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OQP _cell.length_a 80.14 _cell.length_b 114.833 _cell.length_c 155.211 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 C N1 DG 1 C DG 1 1_555 D N3 DC 18 D DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N2 DG 1 C DG 1 1_555 D O2 DC 18 D DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O6 DG 1 C DG 1 1_555 D N4 DC 18 D DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C N1 DA 2 C DA 2 1_555 D N3 DT 17 D DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N6 DA 2 C DA 2 1_555 D O4 DT 17 D DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N3 DT 3 C DT 3 1_555 D N1 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O4 DT 3 C DT 3 1_555 D N6 DA 16 D DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog8 C N1 DG 4 C DG 4 1_555 D O2 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog9 C N2 DG 4 C DG 4 1_555 D N3 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 DT 5 C DT 5 1_555 D N1 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O4 DT 5 C DT 5 1_555 D N6 DA 14 D DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog12 C N2 DG 6 C DG 6 1_555 D O2 DC 13 D DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C N3 DT 7 C DT 7 1_555 D N1 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C O4 DT 7 C DT 7 1_555 D N6 DA 12 D DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N1 DA 8 C DA 8 1_555 D N3 DT 11 D DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N6 DA 8 C DA 8 1_555 D O4 DT 11 D DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 DG 9 C DG 9 1_555 D N3 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N2 DG 9 C DG 9 1_555 D O2 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O6 DG 9 C DG 9 1_555 D N4 DC 10 D DC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N3 DC 10 C DC 10 1_555 D N1 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N4 DC 10 C DC 10 1_555 D O6 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C O2 DC 10 C DC 10 1_555 D N2 DG 9 D DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N3 DT 11 C DT 11 1_555 D N1 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O4 DT 11 C DT 11 1_555 D N6 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N1 DA 12 C DA 12 1_555 D N3 DT 7 D DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N6 DA 12 C DA 12 1_555 D O4 DT 7 D DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 DC 13 C DC 13 1_555 D N1 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C N4 DC 13 C DC 13 1_555 D O6 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C O2 DC 13 C DC 13 1_555 D N2 DG 6 D DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N1 DA 14 C DA 14 1_555 D N3 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N6 DA 14 C DA 14 1_555 D O4 DT 5 D DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C N3 DC 15 C DC 15 1_555 D N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N4 DC 15 C DC 15 1_555 D O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C O2 DC 15 C DC 15 1_555 D N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N1 DA 16 C DA 16 1_555 D N3 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N6 DA 16 C DA 16 1_555 D O4 DT 3 D DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C N3 DT 17 C DT 17 1_555 D N1 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C O4 DT 17 C DT 17 1_555 D N6 DA 2 D DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 C N3 DC 18 C DC 18 1_555 D N1 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 C N4 DC 18 C DC 18 1_555 D O6 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 C O2 DC 18 C DC 18 1_555 D N2 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5OQP _atom_sites.fract_transf_matrix[1][1] 0.012478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006443 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 1PE A 1 1001 1 1PE 1PE . F 5 SO4 A 1 1002 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . E 4 13.007 -3.012 -75.19 1 60.75 ? OH2 1PE 1001 A 1 HETATM 2 C C12 1PE . . . E 4 14.184 -3.755 -75.342 1 54.56 ? C12 1PE 1001 A 1 HETATM 3 C C22 1PE . . . E 4 15.247 -2.89 -76.013 1 65.63 ? C22 1PE 1001 A 1 HETATM 4 O OH3 1PE . . . E 4 16.39 -3.666 -76.241 1 66.46 ? OH3 1PE 1001 A 1 HETATM 5 C C13 1PE . . . E 4 17.846 -1.937 -77.033 1 67.52 ? C13 1PE 1001 A 1 HETATM 6 C C23 1PE . . . E 4 17.168 -3.269 -77.335 1 70.23 ? C23 1PE 1001 A 1 HETATM 7 O OH4 1PE . . . E 4 19.227 -2.084 -77.213 1 60.01 ? OH4 1PE 1001 A 1 HETATM 8 C C14 1PE . . . E 4 20.008 -1.292 -75.093 1 57.41 ? C14 1PE 1001 A 1 HETATM 9 C C24 1PE . . . E 4 20.012 -1.099 -76.606 1 64.09 ? C24 1PE 1001 A 1 HETATM 10 O OH5 1PE . . . E 4 21.327 -1.312 -74.626 1 58.21 ? OH5 1PE 1001 A 1 HETATM 11 C C15 1PE . . . E 4 23.113 -2.668 -73.854 1 56.35 ? C15 1PE 1001 A 1 HETATM 12 C C25 1PE . . . E 4 21.637 -2.323 -73.706 1 46.23 ? C25 1PE 1001 A 1 HETATM 13 O OH6 1PE . . . E 4 23.431 -3.731 -73.001 1 49.15 ? OH6 1PE 1001 A 1 HETATM 14 C C16 1PE . . . E 4 25.511 -2.932 -72.122 1 63.7 ? C16 1PE 1001 A 1 HETATM 15 C C26 1PE . . . E 4 24.796 -4.022 -72.921 1 60.84 ? C26 1PE 1001 A 1 HETATM 16 O OH7 1PE . . . E 4 26.265 -3.518 -71.098 1 78.88 ? OH7 1PE 1001 A 1 HETATM 17 H HO2 1PE . . . E 4 13.103 -2.456 -74.554 1 72.9 ? HO2 1PE 1001 A 1 HETATM 18 H H121 1PE . . . E 4 14.502 -4.04 -74.471 1 65.47 ? H121 1PE 1001 A 1 HETATM 19 H H122 1PE . . . E 4 14.006 -4.534 -75.892 1 65.47 ? H122 1PE 1001 A 1 HETATM 20 H H221 1PE . . . E 4 14.908 -2.556 -76.858 1 78.76 ? H221 1PE 1001 A 1 HETATM 21 H H222 1PE . . . E 4 15.471 -2.144 -75.435 1 78.76 ? H222 1PE 1001 A 1 HETATM 22 H H131 1PE . . . E 4 17.509 -1.256 -77.637 1 81.02 ? H131 1PE 1001 A 1 HETATM 23 H H132 1PE . . . E 4 17.663 -1.679 -76.116 1 81.02 ? H132 1PE 1001 A 1 HETATM 24 H H231 1PE . . . E 4 17.845 -3.942 -77.51 1 84.28 ? H231 1PE 1001 A 1 HETATM 25 H H232 1PE . . . E 4 16.601 -3.172 -78.115 1 84.28 ? H232 1PE 1001 A 1 HETATM 26 H H141 1PE . . . E 4 19.526 -0.562 -74.675 1 68.89 ? H141 1PE 1001 A 1 HETATM 27 H H142 1PE . . . E 4 19.574 -2.133 -74.876 1 68.89 ? H142 1PE 1001 A 1 HETATM 28 H H241 1PE . . . E 4 20.922 -1.163 -76.937 1 76.91 ? H241 1PE 1001 A 1 HETATM 29 H H242 1PE . . . E 4 19.653 -0.223 -76.82 1 76.91 ? H242 1PE 1001 A 1 HETATM 30 H H151 1PE . . . E 4 23.294 -2.924 -74.772 1 67.62 ? H151 1PE 1001 A 1 HETATM 31 H H152 1PE . . . E 4 23.65 -1.895 -73.621 1 67.62 ? H152 1PE 1001 A 1 HETATM 32 H H251 1PE . . . E 4 21.463 -2.01 -72.804 1 55.48 ? H251 1PE 1001 A 1 HETATM 33 H H252 1PE . . . E 4 21.098 -3.109 -73.889 1 55.48 ? H252 1PE 1001 A 1 HETATM 34 H H161 1PE . . . E 4 26.098 -2.433 -72.711 1 76.44 ? H161 1PE 1001 A 1 HETATM 35 H H162 1PE . . . E 4 24.854 -2.331 -71.736 1 76.44 ? H162 1PE 1001 A 1 HETATM 36 H H261 1PE . . . E 4 24.918 -4.877 -72.48 1 73 ? H261 1PE 1001 A 1 HETATM 37 H H262 1PE . . . E 4 25.17 -4.064 -73.815 1 73 ? H262 1PE 1001 A 1 HETATM 38 H HO7 1PE . . . E 4 26.13 -3.098 -70.372 1 94.65 ? HO7 1PE 1001 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #