data_5OQU # _model_server_result.job_id p3Zu32V2giFfAQMVeNVTMQ _model_server_result.datetime_utc '2024-11-24 11:07:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5oqu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":408}' # _entry.id 5OQU # _exptl.entry_id 5OQU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5OQU _cell.length_a 64.668 _cell.length_b 67.922 _cell.length_c 332.804 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5OQU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASN 184 A ASN 161 1_555 H MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc2 B OD2 ASP 198 A ASP 175 1_555 H MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc3 F O1B ADP . A ADP 401 1_555 H MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc4 F O1A ADP . A ADP 401 1_555 H MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 F O2A ADP . A ADP 401 1_555 I MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 234 n n C1 C6 IHP sing 235 n n C1 O11 IHP sing 236 n n C1 H1 IHP sing 237 n n C2 C3 IHP sing 238 n n C2 O12 IHP sing 239 n n C2 H2 IHP sing 240 n n C3 C4 IHP sing 241 n n C3 O13 IHP sing 242 n n C3 H3 IHP sing 243 n n C4 C5 IHP sing 244 n n C4 O14 IHP sing 245 n n C4 H4 IHP sing 246 n n C5 C6 IHP sing 247 n n C5 O15 IHP sing 248 n n C5 H5 IHP sing 249 n n C6 O16 IHP sing 250 n n C6 H6 IHP sing 251 n n O11 P1 IHP sing 252 n n P1 O21 IHP doub 253 n n P1 O31 IHP sing 254 n n P1 O41 IHP sing 255 n n O31 H31 IHP sing 256 n n O41 H41 IHP sing 257 n n O12 P2 IHP sing 258 n n P2 O22 IHP doub 259 n n P2 O32 IHP sing 260 n n P2 O42 IHP sing 261 n n O32 H32 IHP sing 262 n n O42 H42 IHP sing 263 n n O13 P3 IHP sing 264 n n P3 O23 IHP doub 265 n n P3 O33 IHP sing 266 n n P3 O43 IHP sing 267 n n O33 H33 IHP sing 268 n n O43 H43 IHP sing 269 n n O14 P4 IHP sing 270 n n P4 O24 IHP doub 271 n n P4 O34 IHP sing 272 n n P4 O44 IHP sing 273 n n O34 H34 IHP sing 274 n n O44 H44 IHP sing 275 n n O15 P5 IHP sing 276 n n P5 O25 IHP doub 277 n n P5 O35 IHP sing 278 n n P5 O45 IHP sing 279 n n O35 H35 IHP sing 280 n n O45 H45 IHP sing 281 n n O16 P6 IHP sing 282 n n P6 O26 IHP doub 283 n n P6 O36 IHP sing 284 n n P6 O46 IHP sing 285 n n O36 H36 IHP sing 286 n n O46 H46 IHP sing 287 n n # _atom_sites.entry_id 5OQU _atom_sites.fract_transf_matrix[1][1] 0.015464 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014723 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP B 1 401 2 ADP ADP . D 3 ACT B 1 402 4 ACT ACT . E 3 ACT B 1 403 5 ACT ACT . F 2 ADP A 1 401 1 ADP ADP . G 4 A4B A 1 402 1 A4B LC5 . H 5 MG A 1 403 1 MG MG . I 5 MG A 1 404 2 MG MG . J 3 ACT A 1 405 1 ACT ACT . K 3 ACT A 1 406 2 ACT ACT . L 3 ACT A 1 407 3 ACT ACT . M 6 IHP A 1 408 1 IHP I6P . N 7 CL A 1 409 1 CL CL . O 8 HOH B 1 501 13 HOH HOH . O 8 HOH B 2 502 5 HOH HOH . P 8 HOH A 1 501 6 HOH HOH . P 8 HOH A 2 502 9 HOH HOH . P 8 HOH A 3 503 11 HOH HOH . P 8 HOH A 4 504 15 HOH HOH . P 8 HOH A 5 505 14 HOH HOH . P 8 HOH A 6 506 4 HOH HOH . P 8 HOH A 7 507 2 HOH HOH . P 8 HOH A 8 508 7 HOH HOH . P 8 HOH A 9 509 8 HOH HOH . P 8 HOH A 10 510 10 HOH HOH . P 8 HOH A 11 511 3 HOH HOH . P 8 HOH A 12 512 16 HOH HOH . P 8 HOH A 13 513 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . M 6 8.955 134.204 332.391 0.5 128.16 ? C1 IHP 408 A 1 HETATM 2 C C2 IHP . . . M 6 9.477 133.392 333.565 0.5 128.79 ? C2 IHP 408 A 1 HETATM 3 C C3 IHP . . . M 6 10.998 133.447 333.636 0.5 129.84 ? C3 IHP 408 A 1 HETATM 4 C C4 IHP . . . M 6 11.527 134.881 333.604 0.5 129.55 ? C4 IHP 408 A 1 HETATM 5 C C5 IHP . . . M 6 10.84 135.834 332.628 0.5 128.8 ? C5 IHP 408 A 1 HETATM 6 C C6 IHP . . . M 6 9.328 135.661 332.607 0.5 129.23 ? C6 IHP 408 A 1 HETATM 7 O O11 IHP . . . M 6 7.516 134.096 332.358 0.5 127.01 ? O11 IHP 408 A 1 HETATM 8 P P1 IHP . . . M 6 6.553 133.256 331.346 0.5 125.99 ? P1 IHP 408 A 1 HETATM 9 O O21 IHP . . . M 6 6.698 131.779 331.559 0.5 125.14 ? O21 IHP 408 A 1 HETATM 10 O O31 IHP . . . M 6 6.928 133.706 329.923 0.5 125.25 ? O31 IHP 408 A 1 HETATM 11 O O41 IHP . . . M 6 5.134 133.74 331.636 0.5 126.44 ? O41 IHP 408 A 1 HETATM 12 O O12 IHP . . . M 6 9.05 132.022 333.416 0.5 128.49 ? O12 IHP 408 A 1 HETATM 13 P P2 IHP . . . M 6 8.4 131.116 334.598 0.5 127.95 ? P2 IHP 408 A 1 HETATM 14 O O22 IHP . . . M 6 8.042 129.776 333.955 0.5 127.4 ? O22 IHP 408 A 1 HETATM 15 O O32 IHP . . . M 6 9.368 130.986 335.739 0.5 127.75 ? O32 IHP 408 A 1 HETATM 16 O O42 IHP . . . M 6 7.095 131.816 334.996 0.5 128.88 ? O42 IHP 408 A 1 HETATM 17 O O13 IHP . . . M 6 11.576 132.663 332.568 0.5 130.84 ? O13 IHP 408 A 1 HETATM 18 P P3 IHP . . . M 6 11.964 131.067 332.514 0.5 130.93 ? P3 IHP 408 A 1 HETATM 19 O O23 IHP . . . M 6 11.489 130.337 333.731 0.5 130.78 ? O23 IHP 408 A 1 HETATM 20 O O33 IHP . . . M 6 11.327 130.541 331.22 0.5 130.88 ? O33 IHP 408 A 1 HETATM 21 O O43 IHP . . . M 6 13.477 130.936 332.361 0.5 130.4 ? O43 IHP 408 A 1 HETATM 22 O O14 IHP . . . M 6 12.951 134.875 333.353 0.5 129.69 ? O14 IHP 408 A 1 HETATM 23 P P4 IHP . . . M 6 13.814 134.629 331.952 0.5 130.13 ? P4 IHP 408 A 1 HETATM 24 O O24 IHP . . . M 6 14.547 133.332 332.191 0.5 130.65 ? O24 IHP 408 A 1 HETATM 25 O O34 IHP . . . M 6 12.988 134.574 330.703 0.5 130.17 ? O34 IHP 408 A 1 HETATM 26 O O44 IHP . . . M 6 14.869 135.73 331.897 0.5 130.75 ? O44 IHP 408 A 1 HETATM 27 O O15 IHP . . . M 6 11.117 137.18 333.073 0.5 127.63 ? O15 IHP 408 A 1 HETATM 28 P P5 IHP . . . M 6 12.045 138.378 332.535 0.5 126.24 ? P5 IHP 408 A 1 HETATM 29 O O25 IHP . . . M 6 11.346 138.936 331.286 0.5 126.56 ? O25 IHP 408 A 1 HETATM 30 O O35 IHP . . . M 6 11.981 139.453 333.625 0.5 126.84 ? O35 IHP 408 A 1 HETATM 31 O O45 IHP . . . M 6 13.434 137.963 332.269 0.5 124.25 ? O45 IHP 408 A 1 HETATM 32 O O16 IHP . . . M 6 8.788 136.438 331.517 0.5 130.98 ? O16 IHP 408 A 1 HETATM 33 P P6 IHP . . . M 6 7.554 137.454 331.412 0.5 132.47 ? P6 IHP 408 A 1 HETATM 34 O O26 IHP . . . M 6 8.133 138.723 330.772 0.5 132.49 ? O26 IHP 408 A 1 HETATM 35 O O36 IHP . . . M 6 6.425 136.867 330.616 0.5 131.84 ? O36 IHP 408 A 1 HETATM 36 O O46 IHP . . . M 6 7.136 137.795 332.856 0.5 133.02 ? O46 IHP 408 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #